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AMDSBA1_46

Alias: AMDSBA1_C45

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_46_1
unknown

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1..300
-----------------
DNA (300bp)
protein (100aa)
1..300 + ( gc_cont=0.600)
AMDSBA1_46_2
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(690..1484)
-----------------
DNA (795bp)
protein (265aa)
transcriptional regulator, deor family
Transcriptional regulator, DeoR family n=1 Tax=Variovorax paradoxus EPS RepID=E6UVS1_VARPE (db=UNIREF evalue=2.0e-16 bit_score=92.0 identity=26.0 coverage=88.30188679245283)
seg (db=Seg db_id=seg from=224 to=235)
seg (db=Seg db_id=seg from=78 to=86)
AMDSBA1_46_3
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1751..2755
-----------------
DNA (1005bp)
protein (335aa)
LacI family transcriptional regulator
Transcriptional regulator, LacI family n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUG8_XYLCX (db=UNIREF evalue=4.0e-22 bit_score=111.3 identity=29.0 coverage=89.25373134328358)
HTH_LACI_1 (db=PatternScan db_id=PS00356 from=4 to=22 evalue=0.0 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=58 to=318 evalue=2.3e-47)
AMDSBA1_46_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2758..3657
-----------------
DNA (900bp)
protein (300aa)
ribokinase
Ribokinase n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JRH9_9NOCA (db=UNIREF evalue=2.8e-19 bit_score=101.7 identity=29.5 coverage=97.0)
PFKB_KINASES_1 (db=PatternScan db_id=PS00583 from=37 to=61 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=294 evalue=1.0e-63)
AMDSBA1_46_5
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3811..4815
-----------------
DNA (1005bp)
protein (335aa)
periplasmic binding protein/LacI transcriptional regulator
Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans C-125 RepID=Q9K692_BACHD (db=UNIREF evalue=6.6e-09 bit_score=67.4 identity=23.0 coverage=80.29850746268656)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=40 to=324 evalue=1.9e-60)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=42 to=172 evalue=4.1e-25)
AMDSBA1_46_6
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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4836..6362
-----------------
DNA (1527bp)
protein (509aa)
rbsA; ABC transporter ATP-binding protein (EC:3.6.3.17)
Ribose import ATP-binding protein RbsA 1 n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U115_YERKR (db=UNIREF evalue=4.0e-90 bit_score=337.8 identity=40.5 coverage=93.71316306483301)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=7 to=317 evalue=2.2e-105)
seg (db=Seg db_id=seg from=464 to=478)
AMDSBA1_46_7
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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6375..7415
-----------------
DNA (1041bp)
protein (347aa)
ribose/xylose/arabinose/galactoside ABC transporter permease (EC:3.6.3.17)
Sugar ABC transporter, permease n=2 Tax=Streptomyces RepID=D6JZH0_9ACTO (db=UNIREF evalue=2.2e-15 bit_score=89.0 identity=28.2 coverage=73.48703170028818)
transmembrane_regions (db=TMHMM db_id=tmhmm from=291 to=310)
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=276)
AMDSBA1_46_8
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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7417..8406
-----------------
DNA (990bp)
protein (330aa)
alcohol dehydrogenase GroES domain-containing protein
Sorbitol dehydrogenase n=2 Tax=Verticillium RepID=C9SBU7_VERA1 (db=UNIREF evalue=1.3e-36 bit_score=159.5 identity=41.5 coverage=62.121212121212125)
ADH_ZINC (db=PatternScan db_id=PS00059 from=62 to=76 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-type, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11695:SF38 from=12 to=307 evalue=9.5e-59)
AMDSBA1_46_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8441..9883
-----------------
DNA (1443bp)
protein (481aa)
xylulokinase
Xylulokinase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K1_SULAT (db=UNIREF evalue=1.2e-136 bit_score=492.3 identity=50.4 coverage=97.2972972972973)
seg (db=Seg db_id=seg from=425 to=436)
AMDSBA1_46_10
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10807..11565)
-----------------
DNA (759bp)
protein (253aa)
DeoR family transcriptional regulator
Putative aga operon transcriptional repressor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2M8_9PLAN (db=UNIREF evalue=1.6e-20 bit_score=105.5 identity=31.0 coverage=92.88537549407114)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=5 to=39 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF00455 from=77 to=229 evalue=5.4e-35 interpro_id=IPR014036 interpro_description=Transcription regulator HTH, DeoR)
AMDSBA1_46_11
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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12218..13582
-----------------
DNA (1365bp)
protein (455aa)
family 1 extracellular solute-binding protein
family 1 extracellular solute-binding protein
Mannitol ABC transporter, periplasmic mannitol-binding protein n=1 Tax=Marinobacter algicola DG893 RepID=A6EW25_9ALTE (db=UNIREF evalue=3.1e-102 bit_score=377.9 identity=45.3 coverage=92.96703296703296)
AMDSBA1_46_12
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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13615..14553
-----------------
DNA (939bp)
protein (313aa)
sugar ABC transporter permease
Sugar ABC superfamily ATP binding cassette transporter, membrane protein n=30 Tax=Enterococcus faecium RepID=C2HE29_ENTFC (db=UNIREF evalue=7.5e-15 bit_score=87.0 identity=26.5 coverage=86.5814696485623)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
transmembrane_regions (db=TMHMM db_id=tmhmm from=274 to=296)
AMDSBA1_46_13
Rhodococcus rhodnii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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14550..15374
-----------------
DNA (825bp)
protein (275aa)
binding-protein-dependent transport system inner membrane protein
Transport system membrane protein n=4 Tax=Streptomyces RepID=B5I5C9_9ACTO (db=UNIREF evalue=8.0e-21 bit_score=106.7 identity=26.0 coverage=97.45454545454545)
seg (db=Seg db_id=seg from=12 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=237 to=259)
AMDSBA1_46_14
Bacillus clausii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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15389..16387
-----------------
DNA (999bp)
protein (333aa)
hypothetical protein
1-phosphofructokinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3Y7_9GAMM (db=UNIREF evalue=1.3e-20 bit_score=106.3 identity=27.5 coverage=92.1921921921922)
PHOSPHOFRUCTOKINASE(PFK1) (db=HMMPanther db_id=PTHR10584:SF37 from=7 to=313 evalue=3.4e-46)
SUGAR KINASE RELATED (db=HMMPanther db_id=PTHR10584 from=7 to=313 evalue=3.4e-46)
AMDSBA1_46_15
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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16389..17813
-----------------
DNA (1425bp)
protein (475aa)
carbohydrate kinase
Putative carbohydrate kinase n=1 Tax=Microlunatus phosphovorus NM-1 RepID=F5XL35_MICPN (db=UNIREF evalue=4.0e-20 bit_score=105.1 identity=29.5 coverage=52.84210526315789)
seg (db=Seg db_id=seg from=387 to=398)
(db=HMMPfam db_id=PF00370 from=4 to=243 evalue=3.5e-47 interpro_id=IPR018484 interpro_description=Carbohydrate kinase, FGGY, N-terminal GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBA1_46_16

Not on your lists

17810..18841
-----------------
DNA (1032bp)
protein (344aa)
dehydrogenase
Putative uncharacterized protein n=2 Tax=Clostridium symbiosum RepID=E7GLR7_CLOSY (db=UNIREF evalue=4.2e-35 bit_score=154.5 identity=29.9 coverage=93.02325581395348)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=14 to=341 evalue=1.7e-60 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11695:SF38 from=14 to=341 evalue=1.7e-60)
AMDSBA1_46_17
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18856..19830
-----------------
DNA (975bp)
protein (325aa)
alcohol dehydrogenase GroES domain-containing protein
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NGB5_EUBSP (db=UNIREF evalue=8.8e-43 bit_score=179.9 identity=33.0 coverage=96.3076923076923)
seg (db=Seg db_id=seg from=115 to=127)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=11 to=313 evalue=5.7e-56 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_46_18
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

19877..20908
-----------------
DNA (1032bp)
protein (344aa)
alcohol dehydrogenase GroES domain protein
Alcohol dehydrogenase, zinc-containing n=1 Tax=Methanosaeta concilii GP6 RepID=F4BX12_METCG (db=UNIREF evalue=8.8e-25 bit_score=120.2 identity=25.5 coverage=95.05813953488372)
ADH_ZINC (db=PatternScan db_id=PS00059 from=63 to=77 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-type, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11695:SF38 from=17 to=339 evalue=1.2e-63)
AMDSBA1_46_19
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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21014..21769
-----------------
DNA (756bp)
protein (252aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Frankia sp. CcI3 RepID=Q2J589_FRASC (db=UNIREF evalue=1.9e-13 bit_score=82.0 identity=26.4 coverage=96.03174603174604)
Aldolase (db=superfamily db_id=SSF51569 from=3 to=250 evalue=4.8e-49)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=1 to=250 evalue=9.6e-34 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA1_46_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21807..22631
-----------------
DNA (825bp)
protein (275aa)
Tagatose-bisphosphate aldolase (EC:4.1.2.40)
Fructose/tagatose bisphosphate aldolase n=3 Tax=Aspergillus RepID=Q2UV34_ASPOR (db=UNIREF evalue=7.5e-19 bit_score=100.1 identity=29.0 coverage=90.18181818181819)
seg (db=Seg db_id=seg from=185 to=196)
Aldolase (db=superfamily db_id=SSF51569 from=2 to=268 evalue=2.3e-74)
AMDSBA1_46_21
Bacillus hemicellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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22913..23323
-----------------
DNA (411bp)
protein (137aa)
sorbitol dehydrogenase (EC:1.1.1.14)
Sorbitol dehydrogenase n=1 Tax=Amycolicicoccus subflavus DQS3-9A1 RepID=F6EMU0_AMYSD (db=UNIREF evalue=2.5e-07 bit_score=60.8 identity=30.4 coverage=97.8102189781022)
seg (db=Seg db_id=seg from=45 to=57)
seg (db=Seg db_id=seg from=85 to=101)
AMDSBA1_46_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24269..24496)
-----------------
DNA (228bp)
protein (76aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
seg (db=Seg db_id=seg from=9 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
(db=HMMPfam db_id=PF11127 from=1 to=65 evalue=1.1e-17 interpro_id=IPR021309 interpro_description=Protein of unknown function DUF2892)
AMDSBA1_46_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24613..25368
-----------------
DNA (756bp)
protein (252aa)
transcriptional regulator TrmB
Transcriptional regulator, TrmB n=2 Tax=Sulfobacillus acidophilus RepID=G8TWY9_9FIRM (db=UNIREF evalue=1.9e-61 bit_score=241.5 identity=50.4 coverage=90.87301587301587)
(db=HMMPfam db_id=PF01978 from=10 to=78 evalue=6.0e-14 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=8 to=110 evalue=1.8e-08)
AMDSBA1_46_24
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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26046..26492
-----------------
DNA (447bp)
protein (149aa)
hemerythrin HHE cation binding domain protein
Hemerythrin HHE cation binding domain protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M4C0_9FIRM (db=UNIREF evalue=3.9e-14 bit_score=83.6 identity=34.5 coverage=96.64429530201343)
AMDSBA1_46_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26733..27704
-----------------
DNA (972bp)
protein (324aa)
type 11 methyltransferase rbh
type 11 methyltransferase rbh
seg (db=Seg db_id=seg from=192 to=206)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=86 to=317 evalue=2.0e-26)
Displaying 25 items

View Taxonomy