ggKbase home page

AMDSBA1_49

Alias: AMDSBA1_C48

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_49_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

162..896
-----------------
DNA (735bp)
protein (245aa)
ATPase AAA rbh
Putative uncharacterized protein n=1 Tax=Gordonia effusa NBRC 100432 RepID=H0R0V3_9ACTO (db=UNIREF evalue=6.6e-43 bit_score=179.9 identity=42.9 coverage=95.91836734693877)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=13 to=198 evalue=7.2e-17)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=235 evalue=9.1e-12)
AMDSBA1_49_2
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1686..3461)
-----------------
DNA (1776bp)
protein (592aa)
secreted protein
Secreted protein n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2P351_STRVO (db=UNIREF evalue=3.6e-42 bit_score=178.7 identity=38.8 coverage=36.6554054054054)
seg (db=Seg db_id=seg from=477 to=492)
seg (db=Seg db_id=seg from=308 to=319)
AMDSBA1_49_3
Geobacillus sp. G1w1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4398..5876)
-----------------
DNA (1479bp)
protein (493aa)
betaine-aldehyde dehydrogenase
Omega-crystallin n=1 Tax=Enteroctopus dofleini RepID=CROM_ENTDO (db=UNIREF evalue=1.6e-88 bit_score=332.4 identity=39.1 coverage=95.131845841785)
seg (db=Seg db_id=seg from=182 to=199)
AMDSBA1_49_4
Geobacillus sp. GHH01, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5971..7071)
-----------------
DNA (1101bp)
protein (367aa)
alcohol dehydrogenase-related protein
Alcohol dehydrogenase class 3 n=2 Tax=Oligotropha carboxidovorans RepID=B6JE72_OLICO (db=UNIREF evalue=4.4e-67 bit_score=260.8 identity=39.9 coverage=98.9100817438692)
seg (db=Seg db_id=seg from=58 to=72)
ADH_ZINC (db=PatternScan db_id=PS00059 from=58 to=72 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-type, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_49_5
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(7176..7586)
-----------------
DNA (411bp)
protein (137aa)
hypothetical protein
Putative uncharacterized protein GK2773 n=5 Tax=Geobacillus RepID=Q5KW78_GEOKA (db=UNIREF evalue=3.4e-12 bit_score=77.0 identity=29.5 coverage=95.62043795620438)
seg (db=Seg db_id=seg from=113 to=122)
Sterol carrier protein, SCP (db=superfamily db_id=SSF55718 from=8 to=136 evalue=1.2e-06 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
AMDSBA1_49_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7684..9276)
-----------------
DNA (1593bp)
protein (531aa)
thiamine pyrophosphate enzyme-like TPP-binding protein
thiamine pyrophosphate enzyme-like TPP-binding protein
Thiamine pyrophosphate binding domain-containing protein n=1 Tax=Tistrella mobilis KA081020-065 RepID=I3TM65_9PROT (db=UNIREF evalue=9.3e-58 bit_score=230.3 identity=33.1 coverage=98.87005649717514)
seg (db=Seg db_id=seg from=394 to=412)
AMDSBA1_49_7
Thermoplasma acidophilum, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(9273..10238)
-----------------
DNA (966bp)
protein (322aa)
2-hydroxyacid dehydrogenase
2-hydroxyacid dehydrogenase homolog n=28 Tax=Haemophilus RepID=DDH_HAEIN (db=UNIREF evalue=2.0e-26 bit_score=125.6 identity=32.1 coverage=79.19254658385093)
seg (db=Seg db_id=seg from=83 to=105)
seg (db=Seg db_id=seg from=265 to=273)
AMDSBA1_49_8
Deinococcus radiodurans, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

10398..11219
-----------------
DNA (822bp)
protein (274aa)
hypothetical protein
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=5 to=73 evalue=7.7e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF01381 from=22 to=65 evalue=3.0e-09 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=14 to=70 evalue=2.2e-07 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA1_49_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11498..11920
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein
Probably thioesterase n=2 Tax=Pseudovibrio RepID=B6R2W1_9RHOB (db=UNIREF evalue=1.7e-22 bit_score=111.3 identity=42.7 coverage=90.0709219858156)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=4 to=136 evalue=3.1e-35)
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=8 to=140 evalue=8.3e-17)
AMDSBA1_49_10
unknown

Not on your lists

comp(12485..12574)
-----------------
DNA (90bp)
protein (30aa)
12485..12574 - ( gc_cont=0.567)
AMDSBA1_49_11
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12592..13545)
-----------------
DNA (954bp)
protein (318aa)
2-hydroxymuconic semialdehyde hydrolase
seg (db=Seg db_id=seg from=101 to=117)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=54 to=316 evalue=1.6e-33)
VALACYCLOVIR HYDROLASE (db=HMMPanther db_id=PTHR10992:SF17 from=71 to=313 evalue=3.3e-33)
AMDSBA1_49_12
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13638..14075
-----------------
DNA (438bp)
protein (146aa)
msrB; methionine-R-sulfoxide reductase
Peptide methionine sulfoxide reductase MsrB 2 n=9 Tax=Sinorhizobium RepID=MSRB2_RHIME (db=UNIREF evalue=2.1e-44 bit_score=184.1 identity=64.1 coverage=89.04109589041096)
TIGR00357: methionine-R-sulfoxide reductase (db=HMMTigr db_id=TIGR00357 from=1 to=135 evalue=2.8e-83 interpro_id=IPR002579 interpro_description=Methionine sulphoxide reductase B GO=Molecular Function: peptide-methionine-(S)-S-oxide reductase activity (GO:0008113), Biological Process: oxidation-reduction process (GO:0055114))
Mss4-like (db=superfamily db_id=SSF51316 from=1 to=144 evalue=4.6e-57 interpro_id=IPR011057 interpro_description=Mss4-like)
AMDSBA1_49_13
unknown

Not on your lists

comp(13987..14319)
-----------------
DNA (333bp)
protein (111aa)
13987..14319 - ( gc_cont=0.526)
AMDSBA1_49_14
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

Not on your lists

comp(14352..15386)
-----------------
DNA (1035bp)
protein (345aa)
isopentenyl pyrophosphate isomerase
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Methanocella paludicola SANAE RepID=D1YZ37_METPS (db=UNIREF evalue=1.6e-74 bit_score=285.4 identity=47.5 coverage=95.65217391304348)
seg (db=Seg db_id=seg from=275 to=292)
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (db=HMMPIR db_id=PIRSF003314 from=1 to=343 evalue=9.6e-166 interpro_id=IPR011179 interpro_description=Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO=Molecular Function: isopentenyl-diphosphate delta-isomerase activity (GO:0004452), Cellular Component: cytoplasm (GO:0005737), Biological Process: isoprenoid biosynthetic process (GO:0008299), Molecular Function: FMN binding (GO:0010181))
AMDSBA1_49_15
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

15915..17627
-----------------
DNA (1713bp)
protein (571aa)
kdpA; K+-transporting ATPase, A subunit (EC:3.6.3.12)
kdpA; K+-transporting ATPase, A subunit (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=ATKA_MAGSA (db=UNIREF evalue=9.4e-149 bit_score=532.7 identity=49.1 coverage=97.19789842381786)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=196)
AMDSBA1_49_16
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

17629..19686
-----------------
DNA (2058bp)
protein (686aa)
K+-transporting ATPase subunit B
K+-transporting ATPase subunit B
Potassium-transporting ATPase B chain 1 n=52 Tax=Staphylococcus RepID=ATKB1_STAAM (db=UNIREF evalue=4.7e-203 bit_score=713.4 identity=55.7 coverage=96.7930029154519)
seg (db=Seg db_id=seg from=218 to=230)
AMDSBA1_49_17
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

19722..20303
-----------------
DNA (582bp)
protein (194aa)
KdpC; K+-transporting ATPase subunit C
Potassium-transporting ATPase C chain n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XCC1_OXAFO (db=UNIREF evalue=5.8e-34 bit_score=149.8 identity=42.5 coverage=93.81443298969072)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=71 to=85)
AMDSBA1_49_18
unknown

Not on your lists

20369..20485
-----------------
DNA (117bp)
protein (39aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
AMDSBA1_49_19
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21150..22067)
-----------------
DNA (918bp)
protein (306aa)
aldo/keto reductase
aldo/keto reductase
Aldo/keto reductase n=2 Tax=Enterococcus RepID=C8ZZV5_ENTGA (db=UNIREF evalue=6.2e-99 bit_score=366.3 identity=57.8 coverage=99.01960784313727)
AMDSBA1_49_20
unknown

Not on your lists

comp(22255..22380)
-----------------
DNA (126bp)
protein (42aa)
22255..22380 - ( gc_cont=0.516)
AMDSBA1_49_21
Anoxybacillus ayderensis, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23449..23697)
-----------------
DNA (249bp)
protein (83aa)
yjmF; putative oxidoreductase
Short-chain dehydrogenase/reductase SDR n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2S0X9_HALTV (db=UNIREF evalue=1.1e-13 bit_score=81.3 identity=51.8 coverage=97.59036144578313)
SHORT-CHAIN DEHYDROGENASE (db=HMMPanther db_id=PTHR19410:SF62 from=2 to=74 evalue=7.0e-17)
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=2 to=74 evalue=7.0e-17)
AMDSBA1_49_22
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24368..25792
-----------------
DNA (1425bp)
protein (475aa)
sugar transport permease
Sugar transporter n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MCK6_CALMQ (db=UNIREF evalue=1.2e-128 bit_score=465.7 identity=52.2 coverage=97.05263157894737)
transmembrane_regions (db=TMHMM db_id=tmhmm from=371 to=393)
transmembrane_regions (db=TMHMM db_id=tmhmm from=342 to=361)
AMDSBA1_49_23
unknown

Not on your lists

comp(26804..26884)
-----------------
DNA (81bp)
protein (27aa)
26804..26884 - ( gc_cont=0.617)
Displaying 23 items

View Taxonomy