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AMDSBA1_50

Alias: AMDSBA1_C49

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_50_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(449..1486)
-----------------
DNA (1038bp)
protein (346aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YHL6_9GAMM (db=UNIREF evalue=5.2e-33 bit_score=147.5 identity=36.1 coverage=69.36416184971098)
seg (db=Seg db_id=seg from=191 to=202)
DALA_DALA_LIGASE_1 (db=PatternScan db_id=PS00843 from=94 to=105 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site)
AMDSBA1_50_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1548..1763)
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein
Uncharacterized protein yyzM n=21 Tax=Bacillus RepID=YYZM_BACSU (db=UNIREF evalue=3.0e-12 bit_score=76.3 identity=51.7 coverage=81.94444444444444)
Uncharacterised conserved protein, UCP037263 type (db=HMMPIR db_id=PIRSF037263 from=1 to=66 evalue=2.4e-29 interpro_id=IPR009296 interpro_description=Protein of unknown function DUF951)
(db=HMMPfam db_id=PF06107 from=5 to=60 evalue=9.8e-27 interpro_id=IPR009296 interpro_description=Protein of unknown function DUF951)
AMDSBA1_50_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1786..2544)
-----------------
DNA (759bp)
protein (253aa)
MscS Mechanosensitive ion channel n=2 Tax=Sulfobacillus acidophilus RepID=G8TUY3_9FIRM (db=UNIREF evalue=1.3e-54 bit_score=218.8 identity=46.6 coverage=97.23320158102767)
mechanosensitive ion channel MscS
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
AMDSBA1_50_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2544..3110)
-----------------
DNA (567bp)
protein (189aa)
colicin V production protein
Colicin V production protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUY4_9FIRM (db=UNIREF evalue=2.5e-37 bit_score=161.0 identity=42.5 coverage=97.88359788359789)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=108)
AMDSBA1_50_5
unknown

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comp(3140..3508)
-----------------
DNA (369bp)
protein (123aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBA1_50_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3505..4107)
-----------------
DNA (603bp)
protein (201aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=195)
seg (db=Seg db_id=seg from=143 to=159)
TPR-like (db=superfamily db_id=SSF48452 from=1 to=137 evalue=5.4e-28)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=17 to=148 evalue=4.2e-26 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
AMDSBA1_50_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4104..5093)
-----------------
DNA (990bp)
protein (330aa)
hypothetical protein
Uncharacterized protein yyaD n=9 Tax=Bacillus RepID=YYAD_BACSU (db=UNIREF evalue=6.2e-20 bit_score=104.0 identity=28.3 coverage=93.63636363636364)
transmembrane_regions (db=TMHMM db_id=tmhmm from=298 to=320)
transmembrane_regions (db=TMHMM db_id=tmhmm from=250 to=272)
AMDSBA1_50_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5168..5734
-----------------
DNA (567bp)
protein (189aa)
sporulation protein YyaC
Sporulation protein YyaC n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9S192_THEOJ (db=UNIREF evalue=5.0e-38 bit_score=163.3 identity=50.3 coverage=91.005291005291)
spore_YyaC: putative sporulation protein Y (db=HMMTigr db_id=TIGR02841 from=47 to=181 evalue=3.2e-63 interpro_id=IPR009665 interpro_description=Protein of unknown function DUF1256)
(db=HMMPfam db_id=PF06866 from=24 to=179 evalue=7.8e-44 interpro_id=IPR009665 interpro_description=Protein of unknown function DUF1256)
AMDSBA1_50_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5731..6249)
-----------------
DNA (519bp)
protein (173aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus DSM 785 RepID=A9B152_HERA2 (db=UNIREF evalue=8.1e-11 bit_score=72.8 identity=34.0 coverage=86.70520231213872)
seg (db=Seg db_id=seg from=9 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBA1_50_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6264..6965)
-----------------
DNA (702bp)
protein (234aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Desulfotomaculum RepID=F0DNC5_9FIRM (db=UNIREF evalue=8.9e-37 bit_score=159.5 identity=37.5 coverage=94.44444444444444)
transmembrane_regions (db=TMHMM db_id=tmhmm from=209 to=231)
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=202)
AMDSBA1_50_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7037..7960)
-----------------
DNA (924bp)
protein (308aa)
parB; chromosome segregation DNA-binding protein
Stage 0 sporulation protein J n=19 Tax=Bacillus RepID=SP0J_BACSU (db=UNIREF evalue=8.0e-54 bit_score=216.5 identity=41.9 coverage=90.25974025974025)
coiled-coil (db=Coil db_id=coil from=224 to=245 evalue=NA)
seg (db=Seg db_id=seg from=286 to=296)
AMDSBA1_50_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7953..8714)
-----------------
DNA (762bp)
protein (254aa)
chromosome segregation ATPase
chromosome segregation ATPase
Chromosome (Plasmid) partitioning protein ParA n=1 Tax=Patulibacter sp. I11 RepID=H0EB61_9ACTN (db=UNIREF evalue=1.6e-60 bit_score=238.4 identity=47.4 coverage=96.45669291338582)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=251 evalue=2.1e-71)
AMDSBA1_50_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8851..9633)
-----------------
DNA (783bp)
protein (261aa)
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=3 Tax=Clostridium acetobutylicum RepID=RSMG_CLOAB (db=UNIREF evalue=3.9e-17 bit_score=94.4 identity=29.5 coverage=72.79693486590038)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=37 to=258 evalue=1.0e-36)
AMDSBA1_50_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9642..10319)
-----------------
DNA (678bp)
protein (226aa)
yidC; stage III sporulation protein J family protein
Membrane protein insertase YidC n=3 Tax=Acidiphilium RepID=YIDC_ACICJ (db=UNIREF evalue=1.9e-23 bit_score=115.2 identity=30.5 coverage=96.01769911504425)
seg (db=Seg db_id=seg from=150 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
AMDSBA1_50_15
Paenisporosarcina sp. HGH0030, Paenisporosarcina, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10340..10549)
-----------------
DNA (210bp)
protein (70aa)
hypothetical protein
Putative membrane protein insertion efficiency factor n=14 Tax=Fusobacterium RepID=YIDD_FUSNN (db=UNIREF evalue=2.0e-21 bit_score=106.7 identity=66.7 coverage=97.14285714285714)
(db=HMMPfam db_id=PF01809 from=1 to=68 evalue=1.6e-33 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
TIGR00278: conserved hypothetical protein Y (db=HMMTigr db_id=TIGR00278 from=5 to=69 evalue=2.7e-32 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
AMDSBA1_50_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10578..10931)
-----------------
DNA (354bp)
protein (118aa)
seg (db=Seg db_id=seg from=56 to=64)
RIBONUCLEASE_P (db=PatternScan db_id=PS00648 from=50 to=64 evalue=0.0 interpro_id=IPR020539 interpro_description=Ribonuclease P, conserved site GO=Molecular Function: ribonuclease P activity (GO:0004526))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=5 to=109 evalue=2.7e-26 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
(db=HMMPfam db_id=PF00825 from=2 to=107 evalue=2.9e-23 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
AMDSBA1_50_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11315..12706
-----------------
DNA (1392bp)
protein (464aa)
chromosomal replication initiator protein dnaA
chromosomal replication initiator protein dnaA
Chromosomal replication initiator protein DnaA n=3 Tax=Clostridium acetobutylicum RepID=DNAA_CLOAB (db=UNIREF evalue=1.2e-141 bit_score=508.8 identity=54.6 coverage=95.04310344827587)
AMDSBA1_50_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12990..14102
-----------------
DNA (1113bp)
protein (371aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX4_9FIRM (db=UNIREF evalue=7.2e-33 bit_score=147.1 identity=25.0 coverage=98.92183288409704)
seg (db=Seg db_id=seg from=5 to=16)
AMDSBA1_50_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14102..15178
-----------------
DNA (1077bp)
protein (359aa)
DNA replication and repair protein RecF
DNA replication and repair protein RecF
DNA replication and repair protein RecF n=2 Tax=Sulfobacillus acidophilus RepID=G8TV00_9FIRM (db=UNIREF evalue=6.4e-87 bit_score=326.6 identity=47.2 coverage=97.21448467966573)
AMDSBA1_50_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15175..15699
-----------------
DNA (525bp)
protein (175aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TV01_9FIRM (db=UNIREF evalue=1.1e-18 bit_score=99.0 identity=30.8 coverage=93.14285714285714)
(db=HMMPfam db_id=PF05258 from=8 to=93 evalue=1.4e-17 interpro_id=IPR007922 interpro_description=Protein of unknown function DUF721/UPF0232)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I309_SULAT
AMDSBA1_50_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15732..16010
-----------------
DNA (279bp)
protein (93aa)
15732..16010 + ( gc_cont=0.452)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I310_SULAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ38233.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA1_50_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16052..17971
-----------------
DNA (1920bp)
protein (640aa)
gyrB; DNA topoisomerase IV subunit B
gyrB; DNA topoisomerase IV subunit B
DNA gyrase subunit B n=1191 Tax=Bacteria RepID=GYRB_ECO57 (db=UNIREF evalue=5.4e-169 bit_score=600.1 identity=54.2 coverage=85.625)
AMDSBA1_50_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17988..20423
-----------------
DNA (2436bp)
protein (812aa)
BSCG--gyrA
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUP4_9DELT (db=UNIREF evalue=2.1e-239 bit_score=834.3 identity=50.7 coverage=99.50738916256158)
AMDSBA1_50_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20502..21392
-----------------
DNA (891bp)
protein (297aa)
pdxS; pyridoxal biosynthesis lyase PdxS
pdxS; pyridoxal biosynthesis lyase PdxS
Pyridoxal biosynthesis protein PDX1.1 n=2 Tax=Arabidopsis RepID=PDX11_ARATH (db=UNIREF evalue=3.8e-101 bit_score=373.6 identity=68.0 coverage=94.27609427609428)
AMDSBA1_50_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21393..21986
-----------------
DNA (594bp)
protein (198aa)
pyridoxal phosphate synthase yaaE subunit
Glutamine amidotransferase subunit PdxT n=21 Tax=Haemophilus RepID=PDXT_HAEI8 (db=UNIREF evalue=3.5e-34 bit_score=150.6 identity=39.8 coverage=93.93939393939394)
PDXT_SNO_1 (db=PatternScan db_id=PS01236 from=42 to=52 evalue=0.0 interpro_id=IPR021196 interpro_description=PdxT/SNO family, conserved site)
Glutamine amidotransferase, SNO type (db=HMMPIR db_id=PIRSF005639 from=2 to=195 evalue=3.0e-95 interpro_id=IPR002161 interpro_description=Glutamine amidotransferase subunit PdxT)
AMDSBA1_50_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22338..23393
-----------------
DNA (1056bp)
protein (352aa)
mtnA; translation initiation factor, aIF-2BI family
mtnA; translation initiation factor, aIF-2BI family
Methylthioribose-1-phosphate isomerase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=MTNA_ANADF (db=UNIREF evalue=3.0e-81 bit_score=307.8 identity=49.6 coverage=94.60227272727273)
AMDSBA1_50_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23451..24713
-----------------
DNA (1263bp)
protein (421aa)
seryl-tRNA synthetase (EC:6.1.1.11)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Desulfobacca acetoxidans DSM 11109 RepID=F2NIM8_DESAR (db=UNIREF evalue=9.4e-122 bit_score=442.6 identity=53.8 coverage=99.5249406175772)
AMDSBA1_50_28
unknown

Not on your lists

comp(25586..26167)
-----------------
DNA (582bp)
protein (194aa)
seg (db=Seg db_id=seg from=118 to=131)
seg (db=Seg db_id=seg from=29 to=42)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=16 to=93 evalue=3.6e-08 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF01381 from=32 to=77 evalue=1.1e-07 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA1_50_29
unknown

Not on your lists

26303..26527
-----------------
DNA (225bp)
protein (75aa)
26303..26527 + ( gc_cont=0.538)
AMDSBA1_50_30
Gemmata obscuriglobus, Gemmata, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26686..28278
-----------------
DNA (1593bp)
protein (531aa)
hypothetical protein (db=KEGG evalue=1.4e-16 bit_score=93.2 identity=24.7 coverage=73.44632768361582)
Phage/plasmid primase P4-like protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5944 (db=UNIREF evalue=4.7e-09 bit_score=68.6 identity=24.4 coverage=67.04331450094162)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=187 to=391 evalue=2.5e-09)
SF3_HELICASE_1 (db=ProfileScan db_id=PS51206 from=216 to=395 evalue=13.158 interpro_id=IPR014015 interpro_description=Helicase, superfamily 3, DNA virus)
Displaying items 1-30 of 40 in total

View Taxonomy