ggKbase home page

AMDSBA1_51

Alias: AMDSBA1_C50

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_51_1
unknown

Not on your lists

2..286
-----------------
DNA (285bp)
protein (95aa)
2..286 + ( gc_cont=0.446)
AMDSBA1_51_2
unknown

Not on your lists

comp(542..832)
-----------------
DNA (291bp)
protein (97aa)
542..832 - ( gc_cont=0.574)
AMDSBA1_51_3
unknown

Not on your lists

1779..2300
-----------------
DNA (522bp)
protein (174aa)
seg (db=Seg db_id=seg from=8 to=22)
AMDSBA1_51_4
unknown

Not on your lists

comp(2826..3326)
-----------------
DNA (501bp)
protein (167aa)
seg (db=Seg db_id=seg from=42 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
AMDSBA1_51_5
unknown

Not on your lists

3837..4019
-----------------
DNA (183bp)
protein (61aa)
3837..4019 + ( gc_cont=0.503)
AMDSBA1_51_6
unknown

Not on your lists

4170..4415
-----------------
DNA (246bp)
protein (82aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
seg (db=Seg db_id=seg from=32 to=48)
AMDSBA1_51_7
unknown

Not on your lists

4473..5198
-----------------
DNA (726bp)
protein (242aa)
seg (db=Seg db_id=seg from=65 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=101)
AMDSBA1_51_8
unknown

Not on your lists

5688..5918
-----------------
DNA (231bp)
protein (77aa)
5688..5918 + ( gc_cont=0.541)
AMDSBA1_51_9
unknown

Not on your lists

6057..6347
-----------------
DNA (291bp)
protein (97aa)
Tetracyclin repressor-like, C-terminal domain (db=superfamily db_id=SSF48498 from=1 to=90 evalue=4.3e-10 interpro_id=IPR011075 interpro_description=Tetracycline transcriptional regulator, TetR-related, C-terminal)
AMDSBA1_51_10
unknown

Not on your lists

6626..7540
-----------------
DNA (915bp)
protein (305aa)
6626..7540 + ( gc_cont=0.502)
AMDSBA1_51_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8087..9280)
-----------------
DNA (1194bp)
protein (398aa)
glucokinase (EC:2.7.1.2)
glucokinase (EC:2.7.1.2)
Glucokinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSK2_9FIRM (db=UNIREF evalue=1.2e-137 bit_score=495.4 identity=61.9 coverage=97.98994974874373)
seg (db=Seg db_id=seg from=145 to=156)
AMDSBA1_51_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9600..10889
-----------------
DNA (1290bp)
protein (430aa)
family 1 extracellular solute-binding protein
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSK3_9FIRM (db=UNIREF evalue=1.1e-186 bit_score=658.3 identity=73.4 coverage=99.30232558139535)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=21 to=426 evalue=1.0e-54)
AMDSBA1_51_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10965..11891
-----------------
DNA (927bp)
protein (309aa)
carbohydrate ABC transporter membrane protein 1
Probable ABC transporter permease protein PH1215 n=1 Tax=Pyrococcus horikoshii OT3 RepID=Y1215_PYRHO (db=UNIREF evalue=7.1e-58 bit_score=229.9 identity=40.1 coverage=90.93851132686083)
seg (db=Seg db_id=seg from=12 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=280 to=302)
AMDSBA1_51_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11891..12715
-----------------
DNA (825bp)
protein (275aa)
carbohydrate ABC transporter membrane protein 2
carbohydrate ABC transporter membrane protein 2
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSK5_9FIRM (db=UNIREF evalue=4.7e-114 bit_score=416.4 identity=74.5 coverage=99.27272727272727)
AMDSBA1_51_15
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

13059..16247
-----------------
DNA (3189bp)
protein (1063aa)
glucan 1,4-alpha-glucosidase (EC:3.2.1.3)
Glycoside hydrolase 15-related n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IXQ5_NOSP7 (db=UNIREF evalue=1.3e-98 bit_score=367.1 identity=33.1 coverage=63.405456255879585)
seg (db=Seg db_id=seg from=777 to=786)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_51_16
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16581..17612)
-----------------
DNA (1032bp)
protein (344aa)
putative permease
putative permease
Putative permease-like protein ydzE n=7 Tax=Bacillus RepID=YDZE_BACSU (db=UNIREF evalue=4.2e-19 bit_score=101.3 identity=63.9 coverage=20.63953488372093)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=142)
AMDSBA1_51_17
unknown

Not on your lists

comp(17581..17850)
-----------------
DNA (270bp)
protein (90aa)
17581..17850 - ( gc_cont=0.537)
AMDSBA1_51_18
Thermoplasma acidophilum, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

18463..19899
-----------------
DNA (1437bp)
protein (479aa)
D-xylose transporter
Arabinose efflux permease family protein n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C0N2_9CREN (db=UNIREF evalue=3.2e-25 bit_score=122.1 identity=28.3 coverage=91.8580375782881)
seg (db=Seg db_id=seg from=342 to=355)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
AMDSBA1_51_19
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(19975..21240)
-----------------
DNA (1266bp)
protein (422aa)
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHN5_9BRAD (db=UNIREF evalue=1.6e-57 bit_score=229.2 identity=35.4 coverage=90.99526066350711)
transmembrane_regions (db=TMHMM db_id=tmhmm from=109 to=131)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=166)
AMDSBA1_51_20
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(21297..21878)
-----------------
DNA (582bp)
protein (194aa)
regulatory protein TetR
Putative regulatory protein n=1 Tax=Streptomyces ambofaciens ATCC 23877 RepID=A0ADH6_STRAM (db=UNIREF evalue=7.4e-21 bit_score=106.3 identity=34.4 coverage=92.78350515463917)
Tetracyclin repressor-like, C-terminal domain (db=superfamily db_id=SSF48498 from=79 to=187 evalue=3.4e-16 interpro_id=IPR011075 interpro_description=Tetracycline transcriptional regulator, TetR-related, C-terminal)
Homeodomain-like (db=superfamily db_id=SSF46689 from=1 to=77 evalue=7.0e-15 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
AMDSBA1_51_21
unknown

Not on your lists

comp(22680..22967)
-----------------
DNA (288bp)
protein (96aa)
seg (db=Seg db_id=seg from=3 to=15)
AMDSBA1_51_22
unknown

Not on your lists

comp(23194..23583)
-----------------
DNA (390bp)
protein (130aa)
23194..23583 - ( gc_cont=0.505)
Displaying 22 items

View Taxonomy