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AMDSBA1_65

Alias: AMDSBA1_C64

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_65_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..579
DNA (579bp) protein (193aa)
transposase IS4 family protein
Transposase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYU4_9CHLR (db=UNIREF evalue=3.7e-12 bit_score=77.4 identity=42.3 coverage=53.8860103626943)
Transposase IS4 family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IBH4_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEW06541.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA1_65_2
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

607..768
DNA (162bp) protein (54aa)
transposase IS4 family protein
Transposase IS4 family protein n=3 Tax=Bacillus coagulans RepID=G2TI57_BACCO (db=UNIREF evalue=1.6e-10 bit_score=70.1 identity=61.5 coverage=94.44444444444444)
Transposase domain (DUF772) {ECO:0000313|EMBL:CRF28867.1}; TaxID=1773 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" sourc
AMDSBA1_65_3
unknown

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1265..2098
DNA (834bp) protein (278aa)
1265..2098 + ( gc_cont=0.494)
AMDSBA1_65_4
unknown

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2168..2341
DNA (174bp) protein (58aa)
2168..2341 + ( gc_cont=0.534)
AMDSBA1_65_5
unknown

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2648..3055
DNA (408bp) protein (136aa)
seg (db=Seg db_id=seg from=43 to=54)
AMDSBA1_65_6
unknown

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comp(3815..4078)
DNA (264bp) protein (88aa)
seg (db=Seg db_id=seg from=74 to=85)
AMDSBA1_65_7
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4265..5164)
DNA (900bp) protein (300aa)
transposase family protein
Putative uncharacterized protein (Fragment) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY28_9BACT (db=UNIREF evalue=2.0e-12 bit_score=79.0 identity=33.6 coverage=41.66666666666667)
seg (db=Seg db_id=seg from=38 to=48)
seg (db=Seg db_id=seg from=261 to=272)
AMDSBA1_65_8
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5456..5722
DNA (267bp) protein (89aa)
5456..5722 + ( gc_cont=0.513)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EGK07987.1}; EC=1.1.1.35 {ECO:0000313|EMBL:EGK07987.1};; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desm
AMDSBA1_65_9
Streptomyces nodosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6295..7641)
DNA (1347bp) protein (449aa)
Chloride channel core
Voltage-gated chloride channel protein n=1 Tax=Thermococcus sp. AM4 RepID=B7R0V7_9EURY (db=UNIREF evalue=8.7e-41 bit_score=173.7 identity=31.7 coverage=91.0913140311804)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
AMDSBA1_65_10
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8450..9151)
DNA (702bp) protein (234aa)
ydfF; transcriptional regulator
putative transcriptional regulator n=1 Tax=Ornithinibacillus scapharcae TW25 RepID=UPI000225B9D8 (db=UNIREF evalue=1.0e-53 bit_score=215.7 identity=45.9 coverage=94.44444444444444)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=93 evalue=1.2e-17)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=6 to=93 evalue=2.2e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA1_65_11
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9270..9890
DNA (621bp) protein (207aa)
hypothetical protein
Uncharacterized protein ydfE n=9 Tax=Bacillus RepID=YDFE_BACSU (db=UNIREF evalue=1.7e-55 bit_score=221.5 identity=50.5 coverage=96.1352657004831)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=10 to=202 evalue=1.3e-29 interpro_id=IPR009002 interpro_description=FMN-binding split barrel-related)
no description (db=Gene3D db_id=G3DSA:2.30.110.10 from=24 to=202 evalue=2.0e-23 interpro_id=IPR012349 interpro_description=FMN-binding split barrel GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_65_12
unknown

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comp(10660..10854)
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=41 to=60)
AMDSBA1_65_13
unknown

Not on your lists

comp(10868..11314)
DNA (447bp) protein (149aa)
seg (db=Seg db_id=seg from=137 to=148)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=147)
AMDSBA1_65_14
unknown

Not on your lists

11862..12131
DNA (270bp) protein (90aa)
11862..12131 + ( gc_cont=0.581)
AMDSBA1_65_15
unknown

Not on your lists

comp(12463..12642)
DNA (180bp) protein (60aa)
12463..12642 - ( gc_cont=0.550)
AMDSBA1_65_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12655..13431)
DNA (777bp) protein (259aa)
hydH; KinA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Anaerococcus hydrogenalis RepID=F0H0X7_9FIRM (db=UNIREF evalue=4.4e-13 bit_score=80.9 identity=26.7 coverage=83.3976833976834)
TWO COMPONENT SENSOR HISTIDINE KINASE (PHOR) (db=HMMPanther db_id=PTHR23283:SF34 from=45 to=258 evalue=3.1e-35)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=45 to=258 evalue=3.1e-35)
AMDSBA1_65_17
unknown

Not on your lists

14065..14223
DNA (159bp) protein (53aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=41 to=49)
AMDSBA1_65_18
unknown

Not on your lists

14806..15036
DNA (231bp) protein (77aa)
14806..15036 + ( gc_cont=0.563)
AMDSBA1_65_19
unknown

Not on your lists

15033..15242
DNA (210bp) protein (70aa)
15033..15242 + ( gc_cont=0.505)
AMDSBA1_65_20
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15395..15970)
DNA (576bp) protein (192aa)
hypothetical protein (db=KEGG evalue=3.3e-21 bit_score=107.1 identity=36.0 coverage=92.1875)
Putative uncharacterized protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M2B1_9FIRM (db=UNIREF evalue=1.6e-07 bit_score=62.0 identity=29.0 coverage=96.875)
seg (db=Seg db_id=seg from=44 to=65)
seg (db=Seg db_id=seg from=97 to=107)
AMDSBA1_65_21
Saccharomyces cerevisiae, Saccharomyces, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(18043..18771)
DNA (729bp) protein (243aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=46 to=89)
seg (db=Seg db_id=seg from=6 to=21)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
AMDSBA1_65_22
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19523..20203
DNA (681bp) protein (227aa)
tnpR; site-specific recombinase
Transposon Tn21 resolvase n=80 Tax=root RepID=TNR2_ECOLX (db=UNIREF evalue=1.4e-55 bit_score=221.9 identity=76.2 coverage=64.75770925110133)
seg (db=Seg db_id=seg from=186 to=199)
coiled-coil (db=Coil db_id=coil from=39 to=60 evalue=NA)
AMDSBA1_65_23
unknown

Not on your lists

comp(20267..20530)
DNA (264bp) protein (88aa)
20267..20530 - ( gc_cont=0.602)
AMDSBA1_65_24
unknown

Not on your lists

comp(20949..21125)
DNA (177bp) protein (59aa)
20949..21125 - ( gc_cont=0.469)
AMDSBA1_65_25
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

Not on your lists

21788..22123
DNA (336bp) protein (112aa)
DNA polymerase beta domain-containing protein region
DNA polymerase, beta-like region n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q117M5_TRIEI (db=UNIREF evalue=4.1e-08 bit_score=63.2 identity=36.0 coverage=87.5)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=4 to=103 evalue=1.8e-18)
AMDSBA1_65_26
R_OP11_Pacebacteria_46_9, Pacebacteria, Microgenomates, Bacteria

Not on your lists

22098..22484
DNA (387bp) protein (129aa)
hypothetical protein
(db=HMMPfam db_id=PF01934 from=16 to=111 evalue=5.0e-22 interpro_id=IPR008201 interpro_description=Protein of unknown function DUF86)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Pacebacteria_46_9_curated
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UWA6_ROSS1
AMDSBA1_65_27
unknown

Not on your lists

comp(22792..24366)
DNA (1575bp) protein (525aa)
seg (db=Seg db_id=seg from=391 to=403)
seg (db=Seg db_id=seg from=461 to=476)
AMDSBA1_65_28
unknown

Not on your lists

comp(25001..25333)
DNA (333bp) protein (111aa)
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
Displaying 28 items

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