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AMDSBA1_68

Alias: AMDSBA1_C67

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_68_1
Limnoraphis robusta, Limnoraphis, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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383..1786
-----------------
DNA (1404bp)
protein (468aa)
hypothetical protein
Membrane protein-like protein n=2 Tax=Crocosphaera watsonii RepID=G5JAI0_CROWT (db=UNIREF evalue=2.0e-24 bit_score=119.4 identity=23.7 coverage=92.3076923076923)
transmembrane_regions (db=TMHMM db_id=tmhmm from=211 to=230)
transmembrane_regions (db=TMHMM db_id=tmhmm from=250 to=272)
AMDSBA1_68_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1885..2745
-----------------
DNA (861bp)
protein (287aa)
ABC transporter
ABC transporter
ABC-2 type transporter n=2 Tax=Sulfobacillus acidophilus RepID=G8TU57_9FIRM (db=UNIREF evalue=3.2e-97 bit_score=360.5 identity=63.4 coverage=95.1219512195122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=191)
AMDSBA1_68_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2746..3942
-----------------
DNA (1197bp)
protein (399aa)
teichoic-acid-transporting AtPase (EC:3.6.3.40)
O-antigen export system ATP-binding protein RfbB n=2 Tax=Myxococcus xanthus RepID=RFBB_MYXXA (db=UNIREF evalue=1.1e-63 bit_score=249.6 identity=35.9 coverage=99.49874686716792)
seg (db=Seg db_id=seg from=202 to=213)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=4 to=254 evalue=2.0e-100)
AMDSBA1_68_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3944..5053
-----------------
DNA (1110bp)
protein (370aa)
group 1 glycosyl transferase
Glycosyl transferase group 1 n=2 Tax=Sulfobacillus acidophilus RepID=G8TU55_9FIRM (db=UNIREF evalue=1.9e-94 bit_score=351.7 identity=48.4 coverage=97.56756756756756)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=18 to=361 evalue=2.3e-61)
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=5 to=360 evalue=1.5e-55)
AMDSBA1_68_5
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5056..7053
-----------------
DNA (1998bp)
protein (666aa)
Mannosyltransferase n=1 Tax=Methanosarcina mazei Go1 RepID=Q8PZ40_METMA (db=UNIREF evalue=3.8e-08 bit_score=65.9 identity=30.5 coverage=22.67267267267267)
seg (db=Seg db_id=seg from=180 to=193)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=4 to=372 evalue=5.3e-60)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=504 evalue=7.7e-41)
AMDSBA1_68_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7157..8248
-----------------
DNA (1092bp)
protein (364aa)
group 1 glycosyl transferase
Glycosyl transferase, group 1 family protein n=3 Tax=Nitrosococcus RepID=B6C4G6_9GAMM (db=UNIREF evalue=2.4e-17 bit_score=95.5 identity=32.3 coverage=61.81318681318682)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=16 to=358 evalue=1.7e-50)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=3 to=294 evalue=2.2e-38)
AMDSBA1_68_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8235..9200
-----------------
DNA (966bp)
protein (322aa)
family 2 glycosyl transferase
Glycosyl transferase family 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TSV4_9FIRM (db=UNIREF evalue=2.1e-76 bit_score=291.6 identity=48.9 coverage=93.7888198757764)
seg (db=Seg db_id=seg from=76 to=90)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=9 to=258 evalue=2.2e-49)
AMDSBA1_68_8
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9247..10500
-----------------
DNA (1254bp)
protein (418aa)
seg (db=Seg db_id=seg from=170 to=184)
TPR-like (db=superfamily db_id=SSF48452 from=200 to=405 evalue=1.9e-16)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=11 to=75 evalue=1.4e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
TPR-like (db=superfamily db_id=SSF48452 from=82 to=236 evalue=1.9e-09)
AMDSBA1_68_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10603..11541
-----------------
DNA (939bp)
protein (313aa)
beta-lactamase domain-containing protein
Zn-dependent hydrolases, including glyoxylases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D4L4_PELTS (db=UNIREF evalue=2.5e-55 bit_score=221.5 identity=38.4 coverage=97.44408945686901)
seg (db=Seg db_id=seg from=88 to=100)
seg (db=Seg db_id=seg from=3 to=14)
AMDSBA1_68_10
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11556..11894
-----------------
DNA (339bp)
protein (113aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT35_9FIRM (db=UNIREF evalue=1.5e-21 bit_score=107.8 identity=51.5 coverage=88.49557522123894)
Nitrogenase accessory factor-like (db=superfamily db_id=SSF53146 from=3 to=110 evalue=3.8e-14 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
(db=HMMPfam db_id=PF02579 from=12 to=109 evalue=3.9e-09 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
AMDSBA1_68_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11957..12799
-----------------
DNA (843bp)
protein (281aa)
rfbD; dTDP-4-dehydrorhamnose reductase
dTDP-4-dehydrorhamnose reductase n=1 Tax=Methanocella arvoryzae MRE50 RepID=Q0W055_UNCMA (db=UNIREF evalue=8.7e-23 bit_score=113.2 identity=30.7 coverage=76.15658362989323)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=258 evalue=1.5e-67)
(db=HMMPfam db_id=PF04321 from=1 to=263 evalue=3.6e-60 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
AMDSBA1_68_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12861..14021)
-----------------
DNA (1161bp)
protein (387aa)
seg (db=Seg db_id=seg from=233 to=256)
seg (db=Seg db_id=seg from=272 to=286)
seg (db=Seg db_id=seg from=14 to=26)
coiled-coil (db=Coil db_id=coil from=321 to=342 evalue=NA)
AMDSBA1_68_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14315..15745
-----------------
DNA (1431bp)
protein (477aa)
flagellar hook-associated 2 domain-containing protein
Flagellar hook-associated protein 2 n=2 Tax=Ralstonia RepID=E2SUN8_9RALS (db=UNIREF evalue=2.1e-24 bit_score=119.4 identity=26.1 coverage=93.71069182389937)
seg (db=Seg db_id=seg from=38 to=53)
seg (db=Seg db_id=seg from=67 to=82)
AMDSBA1_68_14
unknown

Not on your lists

15763..16167
-----------------
DNA (405bp)
protein (135aa)
(db=HMMPfam db_id=PF02561 from=5 to=111 evalue=4.5e-06 interpro_id=IPR003713 interpro_description=Flagellar protein FliS GO=Cellular Component: bacterial-type flagellum (GO:0009288), Biological Process: flagellum assembly (GO:0009296))
Flagellar export chaperone FliS (db=superfamily db_id=SSF101116 from=4 to=125 evalue=8.2e-06 interpro_id=IPR003713 interpro_description=Flagellar protein FliS GO=Cellular Component: bacterial-type flagellum (GO:0009288), Biological Process: flagellum assembly (GO:0009296))
AMDSBA1_68_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16164..17363
-----------------
DNA (1200bp)
protein (400aa)
family 2 glycosyl transferase
Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YXS3_9SYNE (db=UNIREF evalue=2.2e-27 bit_score=129.0 identity=36.4 coverage=47.75)
seg (db=Seg db_id=seg from=24 to=36)
coiled-coil (db=Coil db_id=coil from=170 to=191 evalue=NA)
Displaying 15 items

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