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AMDSBA1_69

Alias: AMDSBA1_C68

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_69_1
unknown

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1..87
-----------------
DNA (87bp)
protein (29aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=9 to=22)
AMDSBA1_69_2
Filifactor alocis, Filifactor, Clostridiales, Clostridia, Firmicutes, Bacteria

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219..446
-----------------
DNA (228bp)
protein (76aa)
TM2 domain-containing protein
Uncharacterized membrane protein yozV n=4 Tax=Bacillus subtilis RepID=YOZV_BACSU (db=UNIREF evalue=1.8e-18 bit_score=97.1 identity=64.6 coverage=84.21052631578947)
seg (db=Seg db_id=seg from=5 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA1_69_3
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

604..1062
-----------------
DNA (459bp)
protein (153aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Paenibacillus polymyxa SC2 RepID=E3ELC7_PAEPS (db=UNIREF evalue=1.8e-09 bit_score=68.2 identity=38.6 coverage=63.39869281045751)
AMDSBA1_69_4
unknown

Not on your lists

1150..2043
-----------------
DNA (894bp)
protein (298aa)
seg (db=Seg db_id=seg from=164 to=176)
AMDSBA1_69_5
CG_Dehalo_01, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(2211..2432)
-----------------
DNA (222bp)
protein (74aa)
hypothetical protein
seg (db=Seg db_id=seg from=60 to=72)
(db=HMMPfam db_id=PF07927 from=9 to=66 evalue=1.4e-17 interpro_id=IPR012933 interpro_description=Uncharacterised protein family UPF0395 GO=Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
YcfA/nrd intein domain (db=superfamily db_id=SSF54786 from=3 to=71 evalue=4.7e-13 interpro_id=IPR015146 interpro_description=Ribonucleotide reductase, stirrup GO=Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
AMDSBA1_69_6
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(2429..2680)
-----------------
DNA (252bp)
protein (84aa)
TTHA1013-like (db=superfamily db_id=SSF143100 from=5 to=65 evalue=1.5e-13)
(db=HMMPfam db_id=PF03681 from=9 to=54 evalue=8.2e-09 interpro_id=IPR005357 interpro_description=Uncharacterised domain UPF0150)
AMDSBA1_69_7
unknown

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3119..3334
-----------------
DNA (216bp)
protein (72aa)
3119..3334 + ( gc_cont=0.523)
AMDSBA1_69_8
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3509..5617
-----------------
DNA (2109bp)
protein (703aa)
DNA topoisomerase III
DNA topoisomerase n=1 Tax=Lactobacillus salivarius ATCC 11741 RepID=C2EIG6_9LACO (db=UNIREF evalue=1.1e-82 bit_score=313.5 identity=30.7 coverage=98.00853485064012)
seg (db=Seg db_id=seg from=450 to=472)
seg (db=Seg db_id=seg from=148 to=162)
AMDSBA1_69_9
unknown

Not on your lists

5745..6317
-----------------
DNA (573bp)
protein (191aa)
seg (db=Seg db_id=seg from=133 to=147)
AMDSBA1_69_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6345..7448
-----------------
DNA (1104bp)
protein (368aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0H7_9FIRM (db=UNIREF evalue=1.2e-120 bit_score=438.7 identity=61.0 coverage=97.01086956521739)
AMDSBA1_69_11
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7445..8353
-----------------
DNA (909bp)
protein (303aa)
P81 n=1 Tax=Myxococcus phage Mx8 RepID=Q94MN8_9CAUD (db=UNIREF evalue=6.9e-66 bit_score=256.5 identity=57.7 coverage=74.91749174917491)
AAA ATPase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=8 to=90 evalue=3.9e-07)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=16 to=285 evalue=4.5e-06)
AMDSBA1_69_12
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(8949..9845)
-----------------
DNA (897bp)
protein (299aa)
ISSod11, transposase
IS1595 transposase n=2 Tax=Synechococcus sp. WH 5701 RepID=A3YWR5_9SYNE (db=UNIREF evalue=5.4e-47 bit_score=193.7 identity=36.1 coverage=98.32775919732441)
seg (db=Seg db_id=seg from=207 to=220)
Putative uncharacterized protein n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4H8_9BACT
AMDSBA1_69_13
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

9900..10334
-----------------
DNA (435bp)
protein (145aa)
transposase IS200-family protein
Transposase IS200-family protein n=2 Tax=Methanocaldococcaceae RepID=D3S4E3_METSF (db=UNIREF evalue=6.9e-32 bit_score=142.5 identity=50.4 coverage=88.27586206896552)
Transposase IS200-like (db=superfamily db_id=SSF143422 from=14 to=143 evalue=2.7e-43 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
(db=HMMPfam db_id=PF01797 from=24 to=141 evalue=5.4e-41 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBA1_69_14
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10291..11919
-----------------
DNA (1629bp)
protein (543aa)
seg (db=Seg db_id=seg from=285 to=297)
seg (db=Seg db_id=seg from=207 to=222)
(db=HMMPfam db_id=PF07282 from=384 to=443 evalue=1.5e-09 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
(db=HMMPfam db_id=PF01385 from=196 to=367 evalue=5.2e-06 interpro_id=IPR001959 interpro_description=Transposase, probable, IS891/IS1136/IS1341)
AMDSBA1_69_15
unknown

Not on your lists

12165..12320
-----------------
DNA (156bp)
protein (52aa)
seg (db=Seg db_id=seg from=22 to=36)
AMDSBA1_69_16
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12317..13798
-----------------
DNA (1482bp)
protein (494aa)
PinR; site-specific recombinases
Resolvase domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TYC0_9FIRM (db=UNIREF evalue=1.1e-73 bit_score=283.1 identity=37.4 coverage=93.7246963562753)
coiled-coil (db=Coil db_id=coil from=398 to=426 evalue=NA)
RECOMBINASES_1 (db=PatternScan db_id=PS00397 from=5 to=13 evalue=0.0 interpro_id=IPR006118 interpro_description=Recombinase, conserved site GO=Molecular Function: recombinase activity (GO:0000150), Biological Process: DNA recombination (GO:0006310))
AMDSBA1_69_17
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14024..15388
-----------------
DNA (1365bp)
protein (455aa)
general substrate transporter
Major facilitator superfamily MFS_1 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y5B0_9SPHI (db=UNIREF evalue=3.0e-33 bit_score=148.7 identity=28.0 coverage=90.98901098901099)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
AMDSBA1_69_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15866..16648
-----------------
DNA (783bp)
protein (261aa)
surE; stationary-phase survival protein SurE
5'-nucleotidase SurE n=60 Tax=Vibrio RepID=SURE_VIBC3 (db=UNIREF evalue=3.8e-36 bit_score=157.5 identity=36.4 coverage=91.57088122605363)
SurE-like (db=superfamily db_id=SSF64167 from=1 to=257 evalue=4.2e-65 interpro_id=IPR002828 interpro_description=Survival protein SurE-like phosphatase/nucleotidase GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.40.1210.10 from=1 to=256 evalue=1.3e-64 interpro_id=IPR002828 interpro_description=Survival protein SurE-like phosphatase/nucleotidase GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA1_69_19
unknown

Not on your lists

comp(16818..17018)
-----------------
DNA (201bp)
protein (67aa)
seg (db=Seg db_id=seg from=14 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
Displaying 19 items

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