ggKbase home page

AMDSBA1_78

Alias: AMDSBA1_C77

Search features with annotation key words

Displaying 15 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_78_1
unknown

Not on your lists

comp(1..144)
DNA (144bp) protein (48aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=23 evalue=6.0)
AMDSBA1_78_2
unknown

Not on your lists

comp(548..640)
DNA (93bp) protein (31aa)
548..640 - ( gc_cont=0.333)
AMDSBA1_78_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

976..2568
DNA (1593bp) protein (531aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
AMP-dependent synthetase and ligase n=2 Tax=Sulfobacillus acidophilus RepID=F8I3D9_SULAT (db=UNIREF evalue=2.4e-178 bit_score=630.9 identity=60.4 coverage=96.23352165725048)
AMDSBA1_78_4
unknown

Not on your lists

comp(2599..2946)
DNA (348bp) protein (116aa)
2599..2946 - ( gc_cont=0.529)
AMDSBA1_78_5
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3242..4369)
DNA (1128bp) protein (376aa)
thiO; glycine oxidase (EC:1.4.3.19)
NAD binding site:D-amino acid oxidase n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIU2_9CHRO (db=UNIREF evalue=8.1e-24 bit_score=117.1 identity=29.8 coverage=93.35106382978722)
seg (db=Seg db_id=seg from=12 to=24)
thiamin_ThiO: glycine oxidase ThiO (db=HMMTigr db_id=TIGR02352 from=11 to=361 evalue=2.4e-88 interpro_id=IPR012727 interpro_description=Glycine oxidase ThiO GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: flavin adenine dinucleotide binding (GO:0050660))
AMDSBA1_78_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4359..5114)
DNA (756bp) protein (252aa)
(molybdopterin synthase) sulfurylase
Molybdenum cofactor synthesis protein 3 n=3 Tax=Ketogulonicigenium vulgare RepID=F9Y8V0_9RHOB (db=UNIREF evalue=8.4e-33 bit_score=146.4 identity=36.6 coverage=94.84126984126983)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
Activating enzymes of the ubiquitin-like proteins (db=superfamily db_id=SSF69572 from=1 to=245 evalue=3.1e-70 interpro_id=IPR009036 interpro_description=Molybdenum cofactor biosynthesis, MoeB)
AMDSBA1_78_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5118..5897)
DNA (780bp) protein (260aa)
thiG; thiazole synthase
Thiazole synthase n=1 Tax=Frankia sp. CcI3 RepID=THIG_FRASC (db=UNIREF evalue=7.8e-58 bit_score=229.6 identity=50.2 coverage=96.53846153846153)
(db=HMMPfam db_id=PF05690 from=7 to=250 evalue=2.9e-102 interpro_id=IPR008867 interpro_description=Thiazole biosynthesis GO=Biological Process: thiamine biosynthetic process (GO:0009228))
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=2 to=254 evalue=2.0e-96 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA1_78_8
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(5901..6101)
DNA (201bp) protein (67aa)
thiS: thiamine biosynthesis protein ThiS (db=HMMTigr db_id=TIGR01683 from=3 to=66 evalue=1.9e-18 interpro_id=IPR010035 interpro_description=ThiS, thiamine-biosynthesis)
MoaD/ThiS (db=superfamily db_id=SSF54285 from=1 to=66 evalue=9.9e-18 interpro_id=IPR016155 interpro_description=Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp)
no description (db=Gene3D db_id=G3DSA:3.10.20.30 from=1 to=66 evalue=1.3e-14 interpro_id=IPR012675 interpro_description=Beta-grasp fold, ferredoxin-type)
(db=HMMPfam db_id=PF02597 from=4 to=66 evalue=9.0e-14 interpro_id=IPR003749 interpro_description=ThiamineS)
AMDSBA1_78_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6092..6709)
DNA (618bp) protein (206aa)
thiamine monophosphate synthase
Transcriptional regulator TenI n=1 Tax=Bacillus sp. SG-1 RepID=A6CKN1_9BACI (db=UNIREF evalue=3.9e-12 bit_score=77.4 identity=28.9 coverage=86.40776699029125)
Thiamin phosphate synthase (db=superfamily db_id=SSF51391 from=4 to=191 evalue=4.2e-22 interpro_id=IPR022998 interpro_description=Thiamin phosphate synthase superfamily)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=14 to=191 evalue=6.1e-22 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA1_78_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6992..8413)
DNA (1422bp) protein (474aa)
protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase n=1 Tax=Bacillus pseudofirmus OF4 RepID=D3FVT9_BACPE (db=UNIREF evalue=7.7e-72 bit_score=276.9 identity=34.8 coverage=96.41350210970464)
coiled-coil (db=Coil db_id=coil from=446 to=467 evalue=NA)
proto_IX_ox: protoporphyrinogen oxidase (db=HMMTigr db_id=TIGR00562 from=1 to=464 evalue=3.0e-68 interpro_id=IPR004572 interpro_description=Protoporphyrinogen oxidase GO=Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity (GO:0004729), Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_78_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8410..9351)
DNA (942bp) protein (314aa)
ferrochelatase (EC:4.99.1.1)
ferrochelatase n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850AEC (db=UNIREF evalue=7.9e-65 bit_score=253.1 identity=43.1 coverage=95.54140127388536)
(db=HMMPfam db_id=PF00762 from=2 to=303 evalue=4.0e-81 interpro_id=IPR001015 interpro_description=Ferrochelatase GO=Molecular Function: ferrochelatase activity (GO:0004325), Biological Process: heme biosynthetic process (GO:0006783))
FERROCHELATASE (db=HMMPanther db_id=PTHR11108 from=2 to=302 evalue=4.1e-79 interpro_id=IPR001015 interpro_description=Ferrochelatase GO=Molecular Function: ferrochelatase activity (GO:0004325), Biological Process: heme biosynthetic process (GO:0006783))
AMDSBA1_78_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9387..10427)
DNA (1041bp) protein (347aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=5 Tax=Arthrobacter RepID=DCUP_ARTS2 (db=UNIREF evalue=8.4e-68 bit_score=263.1 identity=41.6 coverage=92.21902017291066)
UROD_1 (db=PatternScan db_id=PS00906 from=20 to=29 evalue=0.0 interpro_id=IPR000257 interpro_description=Uroporphyrinogen decarboxylase (URO-D) GO=Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853), Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779))
UROD_2 (db=PatternScan db_id=PS00907 from=138 to=154 evalue=0.0 interpro_id=IPR000257 interpro_description=Uroporphyrinogen decarboxylase (URO-D) GO=Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853), Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779))
AMDSBA1_78_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10541..11926)
DNA (1386bp) protein (462aa)
ammonium transporter
Ammonium transporter 3 member n=1 Tax=Medicago truncatula RepID=G7L1W7_MEDTR (db=UNIREF evalue=1.8e-113 bit_score=415.2 identity=47.6 coverage=92.20779220779221)
transmembrane_regions (db=TMHMM db_id=tmhmm from=336 to=358)
seg (db=Seg db_id=seg from=438 to=454)
AMDSBA1_78_14
unknown

Not on your lists

12355..12789
DNA (435bp) protein (145aa)
12355..12789 + ( gc_cont=0.515)
AMDSBA1_78_15
unknown

Not on your lists

comp(13022..13228)
DNA (207bp) protein (69aa)
13022..13228 - ( gc_cont=0.502)
Displaying 15 items

View Taxonomy