ggKbase home page

AMDSBA1_30_19

Organism: S._benefaciens_IM1

near complete RP 52 / 55 MC: 14 BSCG 51 / 51 ASCG 0 / 38
Location: 22076..22657

Top 3 Functional Annotations

Value Algorithm Source
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 40.0
  • Coverage: 185.0
  • Bit_score: 147
  • Evalue 4.60e-33
Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9Y0_CLAL4 (db=UNIREF evalue=3.4e-10 bit_score=70.9 identity=29.8 coverage=63.91752577319587) similarity UNIREF
DB: UNIREF
  • Identity: 29.8
  • Coverage: 63.92
  • Bit_score: 70
  • Evalue 3.40e-10
HTH_ARAC_FAMILY_1 (db=PatternScan db_id=PS00041 from=143 to=185 evalue=0.0 interpro_id=IPR018062 interpro_description=Helix-turn-helix, AraC type, subdomain 2 GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565)) iprscan interpro
DB: PatternScan
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Paenibacillus sp. MSt1 → Paenibacillus → Bacillales → Bacilli → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 582
GTGCCACAACAGACGCTGACGCCAACAATGGGACGGCCCATTGATGATGCCTTATATGAGGCCGTGTTAACCAGAAGCCCTCATTATGACGGGCGATATTACATTGCTGTTCGCTCTACAGGAATTGTTTGTTTTCCCTCTTGCCGTTCCCGCACGCCGAAACGCGTGAATATTCTGGTCTACACCAGCTACGAAGCGGCTATCGGCGATGCGTTTCGCCCCTGCAAACGATGCACGCCCGATCTTCATTCGCGTCCCCCCGGCCACGACGTGGTGGAGCATGTTAACACGCTTTTGCAAACTCATTGGAACCAGCCGATCTCCCTCATGGACCTCGGCACCGCCCTCAATATGAGTCCGTCCCATCTTCAACGCCTCTACACGCGCTATTGCGGAATATCGCCGCAAAAGGCGTTAGAGATCGTACGCATGGAACACGCTCAAACCCTCCTCGAAAATACGGCATTAACGGTCACAGAGGTGGCTCATCGTGTAGGGTTTCGCAGTCGGTCGCATTTTGTGCATGTCTTCTCGCGAACAATGGGGATAACCCCATCCGCATTTCGTCCCAGGAGGTCATAA
PROTEIN sequence
Length: 194
VPQQTLTPTMGRPIDDALYEAVLTRSPHYDGRYYIAVRSTGIVCFPSCRSRTPKRVNILVYTSYEAAIGDAFRPCKRCTPDLHSRPPGHDVVEHVNTLLQTHWNQPISLMDLGTALNMSPSHLQRLYTRYCGISPQKALEIVRMEHAQTLLENTALTVTEVAHRVGFRSRSHFVHVFSRTMGITPSAFRPRRS*