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AMDSBA1_30

Alias: AMDSBA1_C29

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_30_1
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(206..1513)
-----------------
DNA (1308bp)
protein (436aa)
Retron-type reverse transcriptase
Prophage LambdaSa1, reverse transcriptase/maturase family protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BN34_9GAMM (db=UNIREF evalue=4.5e-34 bit_score=151.4 identity=39.8 coverage=47.706422018348626)
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=34 to=324 evalue=7.5e-57)
(db=HMMPfam db_id=PF00078 from=85 to=317 evalue=5.3e-41 interpro_id=IPR000477 interpro_description=Reverse transcriptase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
AMDSBA1_30_2
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3337..4449
-----------------
DNA (1113bp)
protein (371aa)
Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XK24_LEEBM (db=UNIREF evalue=9.2e-12 bit_score=77.0 identity=25.7 coverage=47.7088948787062)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=108 to=329 evalue=4.4e-06 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
hypothetical protein MzeaS_06691 n=1 Tax=Mesoflavibacter zeaxanthinifaciens S86 RepID=UPI000255B203
AMDSBA1_30_3
unknown

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4609..5508
-----------------
DNA (900bp)
protein (300aa)
seg (db=Seg db_id=seg from=226 to=250)
seg (db=Seg db_id=seg from=38 to=46)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=5.0)
AMDSBA1_30_4
unknown

Not on your lists

comp(5596..5958)
-----------------
DNA (363bp)
protein (121aa)
5596..5958 - ( gc_cont=0.601)
AMDSBA1_30_5
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6173..7051)
-----------------
DNA (879bp)
protein (293aa)
seg (db=Seg db_id=seg from=20 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
(db=HMMPfam db_id=PF05569 from=130 to=210 evalue=1.1e-07 interpro_id=IPR008756 interpro_description=Peptidase M56, BlaR1)
AMDSBA1_30_6
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(7020..7343)
-----------------
DNA (324bp)
protein (108aa)
(db=HMMPfam db_id=PF03965 from=3 to=98 evalue=7.7e-12 interpro_id=IPR005650 interpro_description=Penicillinase repressor GO=Molecular Function: DNA binding (GO:0003677), Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=103 evalue=4.6e-06)
penicillinase repressor
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I818_SULAT
AMDSBA1_30_7
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

7470..7937
-----------------
DNA (468bp)
protein (156aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
AMDSBA1_30_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8546..10909)
-----------------
DNA (2364bp)
protein (788aa)
type III restriction protein res subunit
type III restriction protein res subunit
Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NG94_EUBSP (db=UNIREF evalue=1.4e-81 bit_score=310.1 identity=32.6 coverage=75.38071065989847)
AMDSBA1_30_9
Thermotoga maritima, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(11328..11612)
-----------------
DNA (285bp)
protein (95aa)
(db=HMMPfam db_id=PF07282 from=10 to=64 evalue=3.4e-14 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
AMDSBA1_30_10
unknown

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comp(11786..12121)
-----------------
DNA (336bp)
protein (112aa)
11786..12121 - ( gc_cont=0.560)
AMDSBA1_30_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12249..12674
-----------------
DNA (426bp)
protein (142aa)
(db=HMMPfam db_id=PF01797 from=90 to=140 evalue=2.6e-05 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
transposase IS200-family protein
Transposase IS200-family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4B0_THIK1
AMDSBA1_30_12
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13271..13951
-----------------
DNA (681bp)
protein (227aa)
glycosyl transferase family protein
Glycosyl transferase family protein n=2 Tax=Bacillus subtilis subsp. spizizenii RepID=D5MYE4_BACPN (db=UNIREF evalue=4.8e-56 bit_score=223.4 identity=45.8 coverage=94.27312775330397)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=198 evalue=7.4e-09)
AMDSBA1_30_13
unknown

Not on your lists

14138..14470
-----------------
DNA (333bp)
protein (111aa)
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=3 to=92 evalue=5.3e-07 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: reg
(db=HMMPfam db_id=PF00486 from=22 to=92 evalue=0.00011 interpro_id=IPR001867 interpro_description=Signal transduction response regulator, C-terminal GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=92 evalue=0.00014 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA1_30_14
unknown

Not on your lists

14699..15181
-----------------
DNA (483bp)
protein (161aa)
14699..15181 + ( gc_cont=0.540)
AMDSBA1_30_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15115..16809)
-----------------
DNA (1695bp)
protein (565aa)
alkyl hydroperoxide reductase
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Sulfobacillus acidophilus RepID=G8TST7_9FIRM (db=UNIREF evalue=3.1e-104 bit_score=384.8 identity=39.8 coverage=98.05309734513274)
AMDSBA1_30_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16806..17882)
-----------------
DNA (1077bp)
protein (359aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSB9_9FIRM (db=UNIREF evalue=6.9e-97 bit_score=359.8 identity=50.0 coverage=96.10027855153204)
hypothetical protein
hypothetical protein
AMDSBA1_30_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18348..19361)
-----------------
DNA (1014bp)
protein (338aa)
cytochrome bd quinol oxidase subunit 2 (EC:1.10.3.-)
cytochrome bd quinol oxidase subunit 2 (EC:1.10.3.-)
Cytochrome d ubiquinol oxidase subunit 2 n=11 Tax=Bacillus RepID=CYDB_BACSU (db=UNIREF evalue=2.2e-84 bit_score=318.2 identity=46.6 coverage=98.81656804733728)
seg (db=Seg db_id=seg from=84 to=93)
AMDSBA1_30_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19389..20768)
-----------------
DNA (1380bp)
protein (460aa)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-)
Cytochrome bd quinol oxidase subunit 1 apoprotein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG0_9FIRM (db=UNIREF evalue=8.9e-174 bit_score=615.5 identity=64.0 coverage=98.91304347826086)
seg (db=Seg db_id=seg from=46 to=59)
AMDSBA1_30_19
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22076..22657
-----------------
DNA (582bp)
protein (194aa)
AraC family transcriptional regulator
Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9Y0_CLAL4 (db=UNIREF evalue=3.4e-10 bit_score=70.9 identity=29.8 coverage=63.91752577319587)
HTH_ARAC_FAMILY_1 (db=PatternScan db_id=PS00041 from=143 to=185 evalue=0.0 interpro_id=IPR018062 interpro_description=Helix-turn-helix, AraC type, subdomain 2 GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
Methylphosphotriester-DNA alkyltransferase, AdaA type (db=HMMPIR db_id=PIRSF000408 from=1 to=193 evalue=2.2e-40 interpro_id=IPR016220 interpro_description=Methylphosphotriester-DNA alkyltransferase, AdaA)
AMDSBA1_30_20
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22659..23201
-----------------
DNA (543bp)
protein (181aa)
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Probable methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHP1_BREBN (db=UNIREF evalue=7.8e-33 bit_score=146.0 identity=43.6 coverage=89.50276243093923)
seg (db=Seg db_id=seg from=146 to=155)
MGMT (db=PatternScan db_id=PS00374 from=136 to=142 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
AMDSBA1_30_21
Mycobacterium rufum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24107..24451
-----------------
DNA (345bp)
protein (115aa)
Putative uncharacterized protein n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GWQ0_STRC2 (db=UNIREF evalue=1.6e-07 bit_score=61.2 identity=29.2 coverage=90.43478260869566)
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E2Q5_9MICO
hypothetical protein
AMDSBA1_30_22
unknown

Not on your lists

comp(24399..24560)
-----------------
DNA (162bp)
protein (54aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBA1_30_23
unknown

Not on your lists

24617..24856
-----------------
DNA (240bp)
protein (80aa)
24617..24856 + ( gc_cont=0.525)
AMDSBA1_30_24
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

25214..26089
-----------------
DNA (876bp)
protein (292aa)
DNA adenine methylase Dam (EC:2.1.1.72)
DNA adenine methylase n=1 Tax=Haemophilus pittmaniae HK 85 RepID=F9Q7J8_9PAST (db=UNIREF evalue=5.6e-57 bit_score=226.9 identity=45.7 coverage=90.06849315068493)
N6_MTASE (db=PatternScan db_id=PS00092 from=197 to=203 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
dam: DNA adenine methylase (db=HMMTigr db_id=TIGR00571 from=23 to=287 evalue=3.9e-99 interpro_id=IPR012327 interpro_description=D12 class N6 adenine-specific DNA methyltransferase GO=Molecular Function: site-specific DNA-methyltransferase (adenine-specific) activity (GO:0009007), Biological Process: DNA methylation on adenine (GO:0032775))
AMDSBA1_30_25
unknown

Not on your lists

26936..27115
-----------------
DNA (180bp)
protein (60aa)
26936..27115 + ( gc_cont=0.506)
AMDSBA1_30_26
unknown

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27265..27873
-----------------
DNA (609bp)
protein (203aa)
27265..27873 + ( gc_cont=0.547)
AMDSBA1_30_27
unknown

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comp(28164..28337)
-----------------
DNA (174bp)
protein (58aa)
(db=HMMPfam db_id=PF00239 from=2 to=36 evalue=4.3e-06 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
Resolvase-like (db=superfamily db_id=SSF53041 from=1 to=38 evalue=7.6e-06 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
AMDSBA1_30_28
unknown

Not on your lists

comp(28535..28996)
-----------------
DNA (462bp)
protein (154aa)
28535..28996 - ( gc_cont=0.522)
AMDSBA1_30_29
unknown

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comp(29085..29366)
-----------------
DNA (282bp)
protein (94aa)
29085..29366 - ( gc_cont=0.507)
AMDSBA1_30_30
unknown

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comp(29584..29901)
-----------------
DNA (318bp)
protein (106aa)
29584..29901 - ( gc_cont=0.566)
Displaying items 1-30 of 51 in total

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