ggKbase home page

AMDSBA1_30

Alias: AMDSBA1_C29

Search features with annotation key words

Displaying items 1-30 of 51 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_30_1
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(206..1513)
DNA (1308bp) protein (436aa)
Retron-type reverse transcriptase
Prophage LambdaSa1, reverse transcriptase/maturase family protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BN34_9GAMM (db=UNIREF evalue=4.5e-34 bit_score=151.4 identity=39.8 coverage=47.706422018348626)
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=34 to=324 evalue=7.5e-57)
(db=HMMPfam db_id=PF00078 from=85 to=317 evalue=5.3e-41 interpro_id=IPR000477 interpro_description=Reverse transcriptase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
AMDSBA1_30_2
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3337..4449
DNA (1113bp) protein (371aa)
Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XK24_LEEBM (db=UNIREF evalue=9.2e-12 bit_score=77.0 identity=25.7 coverage=47.7088948787062)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=108 to=329 evalue=4.4e-06 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
Uncharacterized protein {ECO:0000313|EMBL:EZH75749.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;
AMDSBA1_30_3
unknown

Not on your lists

4609..5508
DNA (900bp) protein (300aa)
seg (db=Seg db_id=seg from=226 to=250)
seg (db=Seg db_id=seg from=38 to=46)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=5.0)
AMDSBA1_30_4
unknown

Not on your lists

comp(5596..5958)
DNA (363bp) protein (121aa)
5596..5958 - ( gc_cont=0.601)
AMDSBA1_30_5
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6173..7051)
DNA (879bp) protein (293aa)
seg (db=Seg db_id=seg from=20 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
(db=HMMPfam db_id=PF05569 from=130 to=210 evalue=1.1e-07 interpro_id=IPR008756 interpro_description=Peptidase M56, BlaR1)
AMDSBA1_30_6
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(7020..7343)
DNA (324bp) protein (108aa)
(db=HMMPfam db_id=PF03965 from=3 to=98 evalue=7.7e-12 interpro_id=IPR005650 interpro_description=Penicillinase repressor GO=Molecular Function: DNA binding (GO:0003677), Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=103 evalue=4.6e-06)
Penicillinase repressor {ECO:0000313|EMBL:KIE57698.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" s
penicillinase repressor
AMDSBA1_30_7
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

7470..7937
DNA (468bp) protein (156aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
AMDSBA1_30_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8546..10909)
DNA (2364bp) protein (788aa)
type III restriction protein res subunit
type III restriction protein res subunit
Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NG94_EUBSP (db=UNIREF evalue=1.4e-81 bit_score=310.1 identity=32.6 coverage=75.38071065989847)
AMDSBA1_30_9
Thermotoga maritima, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(11328..11612)
DNA (285bp) protein (95aa)
(db=HMMPfam db_id=PF07282 from=10 to=64 evalue=3.4e-14 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
Transposase, putative {ECO:0000313|EMBL:AAD36103.1}; TaxID=243274 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga maritima (strain ATCC 43589 / MSB8 / D
AMDSBA1_30_10
unknown

Not on your lists

comp(11786..12121)
DNA (336bp) protein (112aa)
11786..12121 - ( gc_cont=0.560)
AMDSBA1_30_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12249..12674
DNA (426bp) protein (142aa)
(db=HMMPfam db_id=PF01797 from=90 to=140 evalue=2.6e-05 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
transposase IS200-family protein
Transposase IS200-family protein {ECO:0000313|EMBL:ADG29711.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K1
Transposase IS200-family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4B0_THIK1
AMDSBA1_30_12
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13271..13951
DNA (681bp) protein (227aa)
glycosyl transferase family protein
Glycosyl transferase family protein n=2 Tax=Bacillus subtilis subsp. spizizenii RepID=D5MYE4_BACPN (db=UNIREF evalue=4.8e-56 bit_score=223.4 identity=45.8 coverage=94.27312775330397)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=198 evalue=7.4e-09)
Glycosyl transferase family protein {ECO:0000313|EMBL:ADM38069.1}; TaxID=655816 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subtilis subsp. spizizenii
AMDSBA1_30_13
unknown

Not on your lists

14138..14470
DNA (333bp) protein (111aa)
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=3 to=92 evalue=5.3e-07 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: reg
(db=HMMPfam db_id=PF00486 from=22 to=92 evalue=0.00011 interpro_id=IPR001867 interpro_description=Signal transduction response regulator, C-terminal GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=92 evalue=0.00014 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA1_30_14
unknown

Not on your lists

14699..15181
DNA (483bp) protein (161aa)
14699..15181 + ( gc_cont=0.540)
AMDSBA1_30_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15115..16809)
DNA (1695bp) protein (565aa)
alkyl hydroperoxide reductase
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Sulfobacillus acidophilus RepID=G8TST7_9FIRM (db=UNIREF evalue=3.1e-104 bit_score=384.8 identity=39.8 coverage=98.05309734513274)
AMDSBA1_30_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16806..17882)
DNA (1077bp) protein (359aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSB9_9FIRM (db=UNIREF evalue=6.9e-97 bit_score=359.8 identity=50.0 coverage=96.10027855153204)
hypothetical protein
hypothetical protein
AMDSBA1_30_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18348..19361)
DNA (1014bp) protein (338aa)
cytochrome bd quinol oxidase subunit 2 (EC:1.10.3.-)
cytochrome bd quinol oxidase subunit 2 (EC:1.10.3.-)
Cytochrome d ubiquinol oxidase subunit 2 n=11 Tax=Bacillus RepID=CYDB_BACSU (db=UNIREF evalue=2.2e-84 bit_score=318.2 identity=46.6 coverage=98.81656804733728)
seg (db=Seg db_id=seg from=84 to=93)
AMDSBA1_30_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19389..20768)
DNA (1380bp) protein (460aa)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-)
Cytochrome bd quinol oxidase subunit 1 apoprotein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG0_9FIRM (db=UNIREF evalue=8.9e-174 bit_score=615.5 identity=64.0 coverage=98.91304347826086)
seg (db=Seg db_id=seg from=46 to=59)
AMDSBA1_30_19
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22076..22657
DNA (582bp) protein (194aa)
AraC family transcriptional regulator
Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9Y0_CLAL4 (db=UNIREF evalue=3.4e-10 bit_score=70.9 identity=29.8 coverage=63.91752577319587)
HTH_ARAC_FAMILY_1 (db=PatternScan db_id=PS00041 from=143 to=185 evalue=0.0 interpro_id=IPR018062 interpro_description=Helix-turn-helix, AraC type, subdomain 2 GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
Methylphosphotriester-DNA alkyltransferase, AdaA type (db=HMMPIR db_id=PIRSF000408 from=1 to=193 evalue=2.2e-40 interpro_id=IPR016220 interpro_description=Methylphosphotriester-DNA alkyltransferase, AdaA)
AMDSBA1_30_20
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22659..23201
DNA (543bp) protein (181aa)
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Probable methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHP1_BREBN (db=UNIREF evalue=7.8e-33 bit_score=146.0 identity=43.6 coverage=89.50276243093923)
seg (db=Seg db_id=seg from=146 to=155)
MGMT (db=PatternScan db_id=PS00374 from=136 to=142 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
AMDSBA1_30_21
Mycobacterium rufum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24107..24451
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GWQ0_STRC2 (db=UNIREF evalue=1.6e-07 bit_score=61.2 identity=29.2 coverage=90.43478260869566)
Uncharacterized protein {ECO:0000313|EMBL:KGI67994.1}; TaxID=318424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rufum.;"
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E2Q5_9MICO
hypothetical protein
AMDSBA1_30_22
unknown

Not on your lists

comp(24399..24560)
DNA (162bp) protein (54aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBA1_30_23
unknown

Not on your lists

24617..24856
DNA (240bp) protein (80aa)
24617..24856 + ( gc_cont=0.525)
AMDSBA1_30_24
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

25214..26089
DNA (876bp) protein (292aa)
DNA adenine methylase Dam (EC:2.1.1.72)
DNA adenine methylase n=1 Tax=Haemophilus pittmaniae HK 85 RepID=F9Q7J8_9PAST (db=UNIREF evalue=5.6e-57 bit_score=226.9 identity=45.7 coverage=90.06849315068493)
N6_MTASE (db=PatternScan db_id=PS00092 from=197 to=203 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
dam: DNA adenine methylase (db=HMMTigr db_id=TIGR00571 from=23 to=287 evalue=3.9e-99 interpro_id=IPR012327 interpro_description=D12 class N6 adenine-specific DNA methyltransferase GO=Molecular Function: site-specific DNA-methyltransferase (adenine-specific) activity (GO:0009007), Biological Process: DNA methylation on adenine (GO:0032775))
AMDSBA1_30_25
unknown

Not on your lists

26936..27115
DNA (180bp) protein (60aa)
26936..27115 + ( gc_cont=0.506)
AMDSBA1_30_26
unknown

Not on your lists

27265..27873
DNA (609bp) protein (203aa)
27265..27873 + ( gc_cont=0.547)
AMDSBA1_30_27
unknown

Not on your lists

comp(28164..28337)
DNA (174bp) protein (58aa)
(db=HMMPfam db_id=PF00239 from=2 to=36 evalue=4.3e-06 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
Resolvase-like (db=superfamily db_id=SSF53041 from=1 to=38 evalue=7.6e-06 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
AMDSBA1_30_28
unknown

Not on your lists

comp(28535..28996)
DNA (462bp) protein (154aa)
28535..28996 - ( gc_cont=0.522)
AMDSBA1_30_29
unknown

Not on your lists

comp(29085..29366)
DNA (282bp) protein (94aa)
29085..29366 - ( gc_cont=0.507)
AMDSBA1_30_30
unknown

Not on your lists

comp(29584..29901)
DNA (318bp) protein (106aa)
29584..29901 - ( gc_cont=0.566)
Displaying items 1-30 of 51 in total

View Taxonomy