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AMDSBA3_13

Alias: AMDSBA3_C12

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Displaying items 31-60 of 60 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_13_31
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

37589..38605
DNA (1017bp) protein (339aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.2)
Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZMK3_9FIRM (db=UNIREF evalue=3.2e-64 bit_score=251.1 identity=42.2 coverage=94.69026548672566)
GLUCOSE KINASE (db=HMMPanther db_id=PTHR18964:SF37 from=68 to=323 evalue=2.0e-55)
ROK FAMILY (db=HMMPanther db_id=PTHR18964 from=68 to=323 evalue=2.0e-55)
AMDSBA3_13_32
Caldivirga maquilingensis, Caldivirga, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

38810..40633
DNA (1824bp) protein (608aa)
hypothetical protein
Glycoside hydrolase, family 42, N-terminal domain protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1S0T7_THEPD (db=UNIREF evalue=1.7e-34 bit_score=153.3 identity=31.4 coverage=50.164473684210535)
seg (db=Seg db_id=seg from=259 to=273)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=3 to=316 evalue=6.1e-42 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
AMDSBA3_13_33
unknown

Not on your lists

40709..40975
DNA (267bp) protein (89aa)
seg (db=Seg db_id=seg from=48 to=60)
AMDSBA3_13_34
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

41231..43531
DNA (2301bp) protein (767aa)
seg (db=Seg db_id=seg from=307 to=319)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=3 to=210 evalue=2.0e-20 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
(db=HMMPfam db_id=PF01074 from=50 to=178 evalue=1.2e-09 interpro_id=IPR000602 interpro_description=Glycoside hydrolase, family 38, core GO=Molecular Function: alpha-mannosidase activity (GO:0004559), Biological Process: carbohydrate metabolic process (GO:0005975))
ALPHA-MANNOSIDASE (db=HMMPanther db_id=PTHR11607 from=45 to=158 evalue=9.0e-09)
AMDSBA3_13_35

Not on your lists

43786..44961
DNA (1176bp) protein (392aa)
iron-containing alcohol dehydrogenase
Alcohol dehydrogenase n=32 Tax=Bacillus RepID=GBSB_BACSU (db=UNIREF evalue=1.1e-47 bit_score=196.4 identity=32.5 coverage=92.85714285714286)
seg (db=Seg db_id=seg from=135 to=145)
ADH_IRON_1 (db=PatternScan db_id=PS00913 from=175 to=203 evalue=0.0 interpro_id=IPR018211 interpro_description=Alcohol dehydrogenase, iron-type, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_13_36
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45220..45930)
DNA (711bp) protein (237aa)
signal protein
Diguanylate phosphodiesterase n=1 Tax=Ruminococcus albus 7 RepID=E6UEN5_RUMA7 (db=UNIREF evalue=3.2e-18 bit_score=97.8 identity=30.8 coverage=88.18565400843882)
seg (db=Seg db_id=seg from=145 to=156)
EAL domain-like (db=superfamily db_id=SSF141868 from=4 to=217 evalue=4.6e-48 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA3_13_37
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46922..47914
DNA (993bp) protein (331aa)
Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Acidiphilium RepID=F7S3R6_9PROT (db=UNIREF evalue=5.2e-83 bit_score=313.5 identity=50.6 coverage=99.09365558912387)
putative ABC transporter substrate-binding protein
putative ABC transporter substrate-binding protein
seg (db=Seg db_id=seg from=97 to=116)
AMDSBA3_13_38

Not on your lists

48207..49706
DNA (1500bp) protein (500aa)
ABC-type sugar transport system, ATPase component (EC:3.6.3.17)
seg (db=Seg db_id=seg from=450 to=464)
seg (db=Seg db_id=seg from=282 to=294)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=304 evalue=4.4e-99)
AMDSBA3_13_39
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49703..50734
DNA (1032bp) protein (344aa)
monosaccharide-transporting ATPase (EC:3.6.3.17) rbh
ABC sugar transporter, inner membrane subunit n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NM11_9RHOB (db=UNIREF evalue=5.4e-51 bit_score=207.2 identity=38.6 coverage=86.62790697674419)
transmembrane_regions (db=TMHMM db_id=tmhmm from=154 to=176)
transmembrane_regions (db=TMHMM db_id=tmhmm from=249 to=271)
AMDSBA3_13_40
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50767..52266
DNA (1500bp) protein (500aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NG84_EUBSP (db=UNIREF evalue=2.3e-13 bit_score=82.8 identity=22.4 coverage=76.8)
seg (db=Seg db_id=seg from=134 to=145)
FGGY_KINASES_2 (db=PatternScan db_id=PS00445 from=336 to=356 evalue=0.0 interpro_id=IPR018483 interpro_description=Carbohydrate kinase, FGGY, conserved site GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
XYLULOSE KINASE (db=HMMPanther db_id=PTHR10196 from=50 to=475 evalue=1.5e-60 interpro_id=IPR000577 interpro_description=Carbohydrate kinase, FGGY GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBA3_13_41
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

52235..53032
DNA (798bp) protein (266aa)
DeoR family transcriptional regulator
DeoR family transcriptional regulator n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SIF9_9BACL (db=UNIREF evalue=1.3e-23 bit_score=115.9 identity=29.8 coverage=93.23308270676691)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=6 to=40 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF00455 from=81 to=234 evalue=3.3e-40 interpro_id=IPR014036 interpro_description=Transcription regulator HTH, DeoR)
AMDSBA3_13_42
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

53029..54198
DNA (1170bp) protein (390aa)
PfkB protein
Putative uncharacterized protein n=2 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW30_9CLOT (db=UNIREF evalue=3.9e-37 bit_score=161.4 identity=31.4 coverage=88.97435897435896)
seg (db=Seg db_id=seg from=303 to=323)
seg (db=Seg db_id=seg from=108 to=119)
AMDSBA3_13_43
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

54238..55002
DNA (765bp) protein (255aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Uncharacterized aldolase AF_0108 n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=Y108_ARCFU (db=UNIREF evalue=1.4e-22 bit_score=112.5 identity=30.1 coverage=97.25490196078431)
Aldolase (db=superfamily db_id=SSF51569 from=3 to=252 evalue=5.6e-51)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=1 to=252 evalue=1.4e-33 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA3_13_44
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

55050..56501
DNA (1452bp) protein (484aa)
xylulokinase
Xylulokinase n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2W1R0_9BURK (db=UNIREF evalue=4.7e-40 bit_score=171.4 identity=37.5 coverage=61.15702479338842)
seg (db=Seg db_id=seg from=422 to=430)
seg (db=Seg db_id=seg from=242 to=258)
AMDSBA3_13_45
unknown

Not on your lists

56526..56768
DNA (243bp) protein (81aa)
56526..56768 + ( gc_cont=0.506)
AMDSBA3_13_46
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(56723..58165)
DNA (1443bp) protein (481aa)
isocitrate dehydrogenase (EC:1.1.1.41)
isocitrate dehydrogenase (EC:1.1.1.41)
Isocitrate dehydrogenase (NADP) (Oxalosuccinatedecarboxylase) (Idh) (Nadp(+)-specific icdh) n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZDY5_9BACT (db=UNIREF evalue=5.1e-172 bit_score=609.8 identity=62.0 coverage=98.33679833679834)
AMDSBA3_13_47
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58932..59219)
DNA (288bp) protein (96aa)
regulatory protein ArsR
Regulatory protein ArsR n=2 Tax=Sulfobacillus acidophilus RepID=G8TSM3_9FIRM (db=UNIREF evalue=2.5e-38 bit_score=163.3 identity=83.9 coverage=95.83333333333334)
seg (db=Seg db_id=seg from=83 to=95)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=9 to=93 evalue=7.1e-10)
AMDSBA3_13_48
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

59862..61658
DNA (1797bp) protein (599aa)
Uncharacterized protein, plant photosystem II stability/assembly factor like protein n=1 Tax=Candidatus Chloracidobacterium thermophilum B RepID=G2LGG1_CHLTF (db=UNIREF evalue=2.6e-16 bit_score=92.8 identity=25.6 coverage=45.57595993322204)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=175 to=486 evalue=6.3e-27)
AMDSBA3_13_49
unknown

Not on your lists

61643..61792
DNA (150bp) protein (50aa)
61643..61792 + ( gc_cont=0.547)
AMDSBA3_13_50
Aquifex aeolicus, Aquifex, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

61907..62497
DNA (591bp) protein (197aa)
seg (db=Seg db_id=seg from=162 to=168)
coiled-coil (db=Coil db_id=coil from=15 to=36 evalue=NA)
GRPE PROTEIN (HSP-70 COFACTOR) (db=HMMPanther db_id=PTHR21237:SF3 from=120 to=196 evalue=4.9e-11)
(db=HMMPfam db_id=PF01025 from=19 to=185 evalue=1.7e-18 interpro_id=IPR000740 interpro_description=GrpE nucleotide exchange factor GO=Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774), Biological Process: protein folding (GO:0006457), Molecular Function: protein homodimerization activity (GO:0042803), Molecular Function: chaperone binding (GO:0051087))
AMDSBA3_13_51
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62498..64303
DNA (1806bp) protein (602aa)
heat shock protein 70
Chaperone protein DnaK n=9 Tax=Mycoplasma RepID=E3VL95_9MOLU (db=UNIREF evalue=1.1e-102 bit_score=379.8 identity=37.4 coverage=91.86046511627907)
Heat shock protein 70kD (HSP70), peptide-binding domain (db=superfamily db_id=SSF100920 from=363 to=533 evalue=4.8e-32)
seg (db=Seg db_id=seg from=539 to=552)
AMDSBA3_13_52
Bacillus azotoformans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

64296..65498
DNA (1203bp) protein (401aa)
Heat shock protein DnaJ domain protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM96_9FIRM (db=UNIREF evalue=6.2e-22 bit_score=110.9 identity=25.3 coverage=97.0074812967581)
heat shock protein DnaJ domain-containing protein
seg (db=Seg db_id=seg from=259 to=272)
Chaperone J-domain (db=superfamily db_id=SSF46565 from=2 to=54 evalue=6.9e-09 interpro_id=IPR001623 interpro_description=Heat shock protein DnaJ, N-terminal GO=Molecular Function: heat shock protein binding (GO:0031072))
AMDSBA3_13_53
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65937..67295)
DNA (1359bp) protein (453aa)
General substrate transporter
Sugar transporter n=1 Tax=Caulobacter sp. K31 RepID=B0T7S6_CAUSK (db=UNIREF evalue=4.4e-32 bit_score=144.8 identity=27.8 coverage=90.50772626931567)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=181 to=198)
AMDSBA3_13_54
unknown

Not on your lists

67595..67864
DNA (270bp) protein (90aa)
67595..67864 + ( gc_cont=0.559)
AMDSBA3_13_55
unknown

Not on your lists

68287..68544
DNA (258bp) protein (86aa)
68287..68544 + ( gc_cont=0.647)
AMDSBA3_13_56
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

69384..70301
DNA (918bp) protein (306aa)
hypothetical protein
Pc13g10250 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H4S5_PENCW (db=UNIREF evalue=1.5e-20 bit_score=105.9 identity=26.5 coverage=96.07843137254902)
seg (db=Seg db_id=seg from=88 to=98)
seg (db=Seg db_id=seg from=32 to=43)
AMDSBA3_13_57
unknown

Not on your lists

70596..71006
DNA (411bp) protein (137aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
AMDSBA3_13_58
unknown

Not on your lists

71068..71238
DNA (171bp) protein (57aa)
71068..71238 + ( gc_cont=0.585)
AMDSBA3_13_59
unknown

Not on your lists

71323..71727
DNA (405bp) protein (135aa)
71323..71727 + ( gc_cont=0.521)
AMDSBA3_13_60
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(72066..72248)
DNA (183bp) protein (61aa)
IstB domain protein ATP-binding protein n=3 Tax=Sulfobacillus acidophilus RepID=G8TYR3_9FIRM (db=UNIREF evalue=6.5e-16 bit_score=88.2 identity=75.5 coverage=85.24590163934425)
IstB domain-containing protein ATP-binding protein
(db=HMMPfam db_id=PF01695 from=3 to=51 evalue=9.6e-05 interpro_id=IPR002611 interpro_description=IstB-like ATP-binding protein GO=Molecular Function: ATP binding (GO:0005524))
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:AEJ40396.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.
Displaying items 31-60 of 60 in total

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