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AMDSBA3_13

Alias: AMDSBA3_C12

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Displaying items 1-30 of 60 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_13_1
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

121..1107
DNA (987bp) protein (329aa)
integrase family protein
Putative uncharacterized protein n=3 Tax=Clostridiales RepID=F7JWN5_9FIRM (db=UNIREF evalue=3.0e-38 bit_score=164.9 identity=32.2 coverage=85.71428571428571)
seg (db=Seg db_id=seg from=52 to=63)
seg (db=Seg db_id=seg from=12 to=30)
AMDSBA3_13_2
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1097..2065
DNA (969bp) protein (323aa)
putative integrase/recombinase y4rB
Putative uncharacterized protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NNK9_9FIRM (db=UNIREF evalue=1.1e-29 bit_score=136.3 identity=30.2 coverage=75.54179566563467)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=110 to=251 evalue=8.0e-26 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=111 to=251 evalue=1.7e-23 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBA3_13_3
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(1935..2984)
DNA (1050bp) protein (350aa)
integrase family protein
integrase family protein
Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NCA8_EUBSP (db=UNIREF evalue=5.7e-72 bit_score=276.9 identity=56.5 coverage=67.42857142857143)
coiled-coil (db=Coil db_id=coil from=309 to=330 evalue=NA)
AMDSBA3_13_4
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2965..3936)
DNA (972bp) protein (324aa)
integrase family protein
integrase family protein
Putative uncharacterized protein n=1 Tax=Clostridium clostridioforme 2_1_49FAA RepID=G5I8V8_9CLOT (db=UNIREF evalue=4.1e-109 bit_score=400.2 identity=59.0 coverage=97.22222222222221)
AMDSBA3_13_5
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(3929..5164)
DNA (1236bp) protein (412aa)
integrase family protein
integrase family protein
Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NCB0_EUBSP (db=UNIREF evalue=6.2e-110 bit_score=403.3 identity=49.5 coverage=98.30097087378641)
AMDSBA3_13_6
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5385..5789
DNA (405bp) protein (135aa)
(db=HMMPfam db_id=PF02899 from=67 to=133 evalue=3.8e-07 interpro_id=IPR004107 interpro_description=Integrase, SAM-like, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA integration (GO:0015074))
Integrase {ECO:0000313|EMBL:KGP76758.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
integrase family protein
Uncharacterized protein n=4 Tax=Sulfobacillus acidophilus RepID=F8IAS8_SULAT
AMDSBA3_13_7

Not on your lists

5855..6316
DNA (462bp) protein (154aa)
Phage integrase, N-terminal SAM-like domain protein n=1 Tax=Desulfosporosinus sp. OT RepID=G2FPZ3_9FIRM (db=UNIREF evalue=4.8e-07 bit_score=60.1 identity=63.0 coverage=29.22077922077922)
seg (db=Seg db_id=seg from=34 to=47)
Marine sediment metagenome DNA, contig: S01H4_L07026 {ECO:0000313|EMBL:GAG85242.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
integrase/recombinase
AMDSBA3_13_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6654..8930)
DNA (2277bp) protein (759aa)
Cell surface receptor IPT/TIG domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSW4_9FIRM (db=UNIREF evalue=2.1e-252 bit_score=877.5 identity=56.1 coverage=97.36495388669302)
cell surface receptor IPT/TIG domain-containing protein rbh
cell surface receptor IPT/TIG domain-containing protein rbh
AMDSBA3_13_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9314..10969)
DNA (1656bp) protein (552aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SC02_9BACL (db=UNIREF evalue=8.7e-59 bit_score=233.8 identity=31.4 coverage=96.37681159420289)
transmembrane_regions (db=TMHMM db_id=tmhmm from=387 to=409)
transmembrane_regions (db=TMHMM db_id=tmhmm from=357 to=374)
AMDSBA3_13_10
unknown

Not on your lists

comp(10966..11172)
DNA (207bp) protein (69aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=44 to=60)
seg (db=Seg db_id=seg from=9 to=24)
AMDSBA3_13_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11183..13375)
DNA (2193bp) protein (731aa)
family 2 glycosyl transferase
Glycosyl transferase, family 2 n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FNF4_METHJ (db=UNIREF evalue=3.0e-107 bit_score=395.2 identity=36.8 coverage=72.64021887824897)
seg (db=Seg db_id=seg from=298 to=307)
transmembrane_regions (db=TMHMM db_id=tmhmm from=640 to=662)
AMDSBA3_13_12
unknown

Not on your lists

13710..14018
DNA (309bp) protein (103aa)
13710..14018 + ( gc_cont=0.557)
AMDSBA3_13_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14368..15279
DNA (912bp) protein (304aa)
mechanosensitive ion channel MscS
Conserved hypothetical membrane protein n=1 Tax=Thermoplasma acidophilum DSM 1728 RepID=Q9HJQ8_THEAC (db=UNIREF evalue=7.2e-23 bit_score=113.6 identity=25.5 coverage=95.72368421052632)
seg (db=Seg db_id=seg from=285 to=295)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
AMDSBA3_13_14
unknown

Not on your lists

comp(15321..16445)
DNA (1125bp) protein (375aa)
15321..16445 - ( gc_cont=0.627)
AMDSBA3_13_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16804..18438)
DNA (1635bp) protein (545aa)
Exosortase EpsH-like protein
Exosortase EpsH-like protein
Exosortase EpsH-related protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSV9_9FIRM (db=UNIREF evalue=3.5e-129 bit_score=467.6 identity=46.7 coverage=97.79816513761467)
seg (db=Seg db_id=seg from=14 to=31)
AMDSBA3_13_16
unknown

Not on your lists

comp(18629..19024)
DNA (396bp) protein (132aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=125)
seg (db=Seg db_id=seg from=109 to=121)
seg (db=Seg db_id=seg from=19 to=39)
AMDSBA3_13_17
Cyanobium gracile, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

19331..21022
DNA (1692bp) protein (564aa)
diguanylate cyclase
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y806_9GAMM (db=UNIREF evalue=1.5e-13 bit_score=83.6 identity=34.4 coverage=26.773049645390074)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=148 to=307 evalue=4.6e-31 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
(db=HMMPfam db_id=PF00563 from=321 to=548 evalue=2.0e-45 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA3_13_18
Paenibacillus sp. E194, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21960..24041
DNA (2082bp) protein (694aa)
hypothetical protein
AAA ATPase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CA98_SPHTD (db=UNIREF evalue=6.5e-27 bit_score=128.3 identity=29.7 coverage=51.5850144092219)
seg (db=Seg db_id=seg from=488 to=503)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=4 to=242 evalue=4.5e-12)
AMDSBA3_13_19
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24130..25371
DNA (1242bp) protein (414aa)
major facilitator family transporter
General substrate transporter n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GUT2_9EURY (db=UNIREF evalue=4.0e-32 bit_score=144.8 identity=40.9 coverage=45.169082125603865)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
AMDSBA3_13_20
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25486..26214)
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=37 to=88)
seg (db=Seg db_id=seg from=105 to=116)
seg (db=Seg db_id=seg from=224 to=237)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA3_13_21
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26644..27537)
DNA (894bp) protein (298aa)
ROK family protein
ROK family protein n=1 Tax=Trichomonas vaginalis RepID=A2FXV9_TRIVA (db=UNIREF evalue=2.1e-27 bit_score=128.6 identity=32.7 coverage=94.29530201342283)
ROK FAMILY (db=HMMPanther db_id=PTHR18964 from=57 to=285 evalue=9.9e-52)
GLUCOSE KINASE (db=HMMPanther db_id=PTHR18964:SF10 from=57 to=285 evalue=9.9e-52)
AMDSBA3_13_22
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(27569..28567)
DNA (999bp) protein (333aa)
alcohol dehydrogenase GroES domain protein
Dihydroxyacetone reductase n=1 Tax=Ogataea parapolymorpha DL-1 RepID=E7RAG1_PICAD (db=UNIREF evalue=1.2e-15 bit_score=89.7 identity=26.2 coverage=75.67567567567568)
seg (db=Seg db_id=seg from=170 to=186)
ADH_ZINC (db=PatternScan db_id=PS00059 from=65 to=79 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-type, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_13_23
S_OP1_64_32, KB1, Bacteria

Not on your lists

28703..29722
DNA (1020bp) protein (340aa)
putative LacI-family transcriptional regulator
LacI family transcriptional regulator n=2 Tax=Streptomyces RepID=D6EQX0_STRLI (db=UNIREF evalue=6.4e-28 bit_score=130.6 identity=30.5 coverage=94.70588235294117)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=62 to=337 evalue=3.0e-48)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=155 to=299 evalue=4.5e-31)
AMDSBA3_13_24
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29867..31057
DNA (1191bp) protein (397aa)
iron-containing alcohol dehydrogenase
4-hydroxybutyrate dehydrogenase n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XIQ7_9BURK (db=UNIREF evalue=5.5e-39 bit_score=167.5 identity=30.2 coverage=92.9471032745592)
Dehydroquinate synthase-like (db=superfamily db_id=SSF56796 from=7 to=394 evalue=2.6e-102)
(db=HMMPfam db_id=PF00465 from=12 to=385 evalue=6.2e-101 interpro_id=IPR001670 interpro_description=Alcohol dehydrogenase, iron-type GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_13_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31202..33568
DNA (2367bp) protein (789aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.25)
Glycoside hydrolase family 2 sugar binding n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3W5_9BACT (db=UNIREF evalue=6.5e-132 bit_score=477.2 identity=38.6 coverage=95.94423320659062)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=323 to=658 evalue=3.5e-38 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
AMDSBA3_13_26
unknown

Not on your lists

33683..34072
DNA (390bp) protein (130aa)
seg (db=Seg db_id=seg from=7 to=23)
seg (db=Seg db_id=seg from=39 to=51)
seg (db=Seg db_id=seg from=82 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_13_27
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34036..34989
DNA (954bp) protein (318aa)
Putative sugar ABC transporter substrate-binding protein
Putative sugar uptake ABC transporter periplasmic solute-binding protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1G5_9RHOB (db=UNIREF evalue=4.0e-08 bit_score=64.7 identity=26.0 coverage=65.09433962264151)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=9 to=291 evalue=7.0e-37)
no description (db=Gene3D db_id=G3DSA:3.40.190.10 from=36 to=244 evalue=1.1e-30)
AMDSBA3_13_28
Arthrobacter sp. MWB30, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35114..36100
DNA (987bp) protein (329aa)
transmembrane sugar transporter
Transmembrane sugar transporter n=3 Tax=Streptomyces RepID=B5GF51_9ACTO (db=UNIREF evalue=6.5e-78 bit_score=296.6 identity=46.0 coverage=93.3130699088146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=138 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=293 to=315)
AMDSBA3_13_29
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36093..36938
DNA (846bp) protein (282aa)
binding-protein-dependent transport system inner membrane protein
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=E4NLK4_HALBP (db=UNIREF evalue=5.9e-11 bit_score=73.9 identity=26.3 coverage=73.75886524822694)
transmembrane_regions (db=TMHMM db_id=tmhmm from=147 to=169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=242 to=264)
AMDSBA3_13_30
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36966..37592
DNA (627bp) protein (209aa)
putative phosphoheptose isomerase
Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D8I0_9CLOT (db=UNIREF evalue=1.6e-42 bit_score=178.3 identity=47.1 coverage=96.17224880382776)
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=20 to=205 evalue=2.0e-39)
SIS domain (db=superfamily db_id=SSF53697 from=1 to=207 evalue=1.0e-33)
Displaying items 1-30 of 60 in total

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