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AMDSBA3_21

Alias: AMDSBA3_C20

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Displaying items 1-30 of 52 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_21_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(88..282)
DNA (195bp) protein (65aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ41069.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I631_SULAT
AMDSBA3_21_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(555..956)
DNA (402bp) protein (134aa)
hypothetical protein (db=KEGG evalue=6.2e-11 bit_score=72.4 identity=32.3 coverage=91.04477611940298)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTA1_9FIRM (db=UNIREF evalue=8.2e-11 bit_score=72.4 identity=32.3 coverage=91.04477611940298)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=5.0)
AMDSBA3_21_3
unknown

Not on your lists

comp(1338..1451)
DNA (114bp) protein (38aa)
1338..1451 - ( gc_cont=0.518)
AMDSBA3_21_4
unknown

Not on your lists

1625..1786
DNA (162bp) protein (54aa)
1625..1786 + ( gc_cont=0.549)
AMDSBA3_21_5
unknown

Not on your lists

1894..1998
DNA (105bp) protein (35aa)
1894..1998 + ( gc_cont=0.590)
AMDSBA3_21_6
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2126..2476
DNA (351bp) protein (117aa)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=103 evalue=2.5e-16)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=103 evalue=3.3e-13 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
no description (db=HMMSmart db_id=SM00418 from=5 to=99 evalue=1.3e-06 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF01022 from=41 to=71 evalue=5.1e-06 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA3_21_7
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2527..3612
DNA (1086bp) protein (362aa)
arsM; arsenite S-adenosylmethyltransferase
Methyltransferase type 11 n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QUN0_9EURY (db=UNIREF evalue=6.5e-71 bit_score=273.5 identity=54.6 coverage=70.99447513812154)
seg (db=Seg db_id=seg from=125 to=131)
seg (db=Seg db_id=seg from=36 to=46)
AMDSBA3_21_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4454..5599
DNA (1146bp) protein (382aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=257 to=275)
transmembrane_regions (db=TMHMM db_id=tmhmm from=285 to=307)
transmembrane_regions (db=TMHMM db_id=tmhmm from=328 to=350)
seg (db=Seg db_id=seg from=59 to=70)
AMDSBA3_21_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5596..6663)
DNA (1068bp) protein (356aa)
seg (db=Seg db_id=seg from=10 to=23)
seg (db=Seg db_id=seg from=119 to=151)
seg (db=Seg db_id=seg from=212 to=229)
seg (db=Seg db_id=seg from=332 to=355)
AMDSBA3_21_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6697..7908)
DNA (1212bp) protein (404aa)
hypothetical protein rbh
Putative membrane protein n=1 Tax=Kitasatospora setae KM-6054 RepID=E4NEM4_KITSK (db=UNIREF evalue=5.4e-66 bit_score=257.3 identity=41.8 coverage=97.27722772277228)
seg (db=Seg db_id=seg from=387 to=401)
seg (db=Seg db_id=seg from=370 to=385)
AMDSBA3_21_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7905..8597)
DNA (693bp) protein (231aa)
phosphonate-transporting ATPase (EC:3.6.3.28)
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Alcanivorax borkumensis SK2 RepID=MACB_ALCBS (db=UNIREF evalue=6.4e-56 bit_score=223.0 identity=49.5 coverage=93.93939393939394)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=224 evalue=1.5e-112)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=145 to=159 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA3_21_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8600..9691)
DNA (1092bp) protein (364aa)
seg (db=Seg db_id=seg from=348 to=363)
seg (db=Seg db_id=seg from=14 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
seg (db=Seg db_id=seg from=29 to=44)
AMDSBA3_21_13
unknown

Not on your lists

10013..10207
DNA (195bp) protein (65aa)
10013..10207 + ( gc_cont=0.600)
AMDSBA3_21_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10318..11094
DNA (777bp) protein (259aa)
enoyl-ACP reductase (EC:1.3.1.9) rbh
enoyl-ACP reductase (EC:1.3.1.9) rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L503_9BACI (db=UNIREF evalue=3.6e-63 bit_score=247.3 identity=50.8 coverage=97.68339768339769)
ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (db=HMMPanther db_id=PTHR19410:SF12 from=4 to=251 evalue=4.0e-85)
AMDSBA3_21_15
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

11182..12555
DNA (1374bp) protein (458aa)
pepA; cytosolic aminopeptidase
Probable cytosol aminopeptidase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LEX2_9FIRM (db=UNIREF evalue=8.5e-68 bit_score=263.5 identity=39.6 coverage=88.42794759825327)
seg (db=Seg db_id=seg from=243 to=259)
seg (db=Seg db_id=seg from=185 to=195)
AMDSBA3_21_16
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12728..13681)
DNA (954bp) protein (318aa)
molecular chaperone GroES
Predicted CDS Pa_4_9480 n=1 Tax=Podospora anserina S mat+ RepID=B2AQW4_PODAN (db=UNIREF evalue=5.1e-27 bit_score=127.5 identity=31.4 coverage=86.47798742138365)
seg (db=Seg db_id=seg from=151 to=166)
ADH_ZINC (db=PatternScan db_id=PS00059 from=59 to=73 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-type, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_21_17
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(13714..15156)
DNA (1443bp) protein (481aa)
EmrB/QacA subfamily drug resistance transporter
EmrB/QacA subfamily drug resistance transporter
Major facilitator superfamily MFS_1 n=2 Tax=Sulfobacillus acidophilus RepID=G8U0X1_9FIRM (db=UNIREF evalue=2.1e-88 bit_score=332.0 identity=68.2 coverage=50.1039501039501)
transmembrane_regions (db=TMHMM db_id=tmhmm from=303 to=325)
AMDSBA3_21_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15187..15738)
DNA (552bp) protein (184aa)
seg (db=Seg db_id=seg from=143 to=155)
seg (db=Seg db_id=seg from=61 to=70)
seg (db=Seg db_id=seg from=33 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
AMDSBA3_21_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16024..16872
DNA (849bp) protein (283aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157) rbh
3-hydroxybutyryl-CoA dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG5_9FIRM (db=UNIREF evalue=3.3e-110 bit_score=403.7 identity=72.4 coverage=99.29328621908127)
seg (db=Seg db_id=seg from=71 to=85)
AMDSBA3_21_20
unknown

Not on your lists

comp(17336..17536)
DNA (201bp) protein (67aa)
seg (db=Seg db_id=seg from=45 to=61)
AMDSBA3_21_21

Not on your lists

comp(17536..17850)
DNA (315bp) protein (105aa)
17536..17850 - ( gc_cont=0.619)
Marine sediment metagenome DNA, contig: S12H4_S09923 {ECO:0000313|EMBL:GAI90472.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein GobsU_16402 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3596
hypothetical protein
AMDSBA3_21_22
unknown

Not on your lists

comp(17935..18234)
DNA (300bp) protein (100aa)
17935..18234 - ( gc_cont=0.630)
AMDSBA3_21_23

Not on your lists

comp(18457..19383)
DNA (927bp) protein (309aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SU45_9DELT (db=UNIREF evalue=1.5e-07 bit_score=62.8 identity=28.9 coverage=49.83818770226537)
(db=HMMPfam db_id=PF08843 from=113 to=290 evalue=3.0e-12 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
Uncharacterized protein {ECO:0000313|EMBL:KKP56138.1}; TaxID=1618891 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_34_10.;"
AMDSBA3_21_24
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19840..20682
DNA (843bp) protein (281aa)
sporulation protein YtxC
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AY07_SYNWW (db=UNIREF evalue=2.3e-15 bit_score=88.6 identity=29.3 coverage=76.15658362989323)
(db=HMMPfam db_id=PF08812 from=56 to=261 evalue=2.7e-42 interpro_id=IPR014199 interpro_description=Sporulation protein YtxC)
Putative sporulation protein YtxC {ECO:0000313|EMBL:EMS70104.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] ter
AMDSBA3_21_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20943..22844
DNA (1902bp) protein (634aa)
threonyl-tRNA synthetase (EC:6.1.1.3) rbh
threonyl-tRNA synthetase (EC:6.1.1.3) rbh
Threonine--tRNA ligase n=2 Tax=Desulfotomaculum RepID=F0DLU0_9FIRM (db=UNIREF evalue=1.4e-198 bit_score=698.4 identity=54.6 coverage=94.6372239747634)
coiled-coil (db=Coil db_id=coil from=116 to=137 evalue=NA)
AMDSBA3_21_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23093..23572
DNA (480bp) protein (160aa)
translation initiation factor 3 (bIF-3)
Translation initiation factor IF-3 n=1 Tax=Clostridium tetani E88 RepID=IF3_CLOTE (db=UNIREF evalue=6.5e-39 bit_score=166.0 identity=48.4 coverage=96.875)
IF3 (db=PatternScan db_id=PS00938 from=46 to=59 evalue=0.0 interpro_id=IPR019813 interpro_description=Translation initiation factor 3, conserved site GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=1 to=158 evalue=4.8e-59 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
AMDSBA3_21_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23576..23773
DNA (198bp) protein (66aa)
50S ribosomal protein L35
50S ribosomal protein L35 n=8 Tax=Caldicellulosiruptor RepID=RL35_ANATD (db=UNIREF evalue=4.0e-11 bit_score=72.4 identity=54.7 coverage=95.45454545454545)
seg (db=Seg db_id=seg from=40 to=46)
RIBOSOMAL_L35 (db=PatternScan db_id=PS00936 from=5 to=31 evalue=0.0 interpro_id=IPR018265 interpro_description=Ribosomal protein L35, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA3_21_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23804..24157
DNA (354bp) protein (118aa)
50S ribosomal protein L20P
50S ribosomal protein L20 n=3 Tax=Chloroflexus RepID=RL20_CHLAA (db=UNIREF evalue=1.8e-33 bit_score=147.5 identity=60.7 coverage=98.30508474576271)
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=6.4e-70 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
AMDSBA3_21_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24157..24999
DNA (843bp) protein (281aa)
tRNA/rRNA methyltransferase SpoU
Ribosomal RNA small subunit methyltransferase G 2 n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=RSMG2_SYNFM (db=UNIREF evalue=2.4e-12 bit_score=78.6 identity=26.5 coverage=85.76512455516014)
seg (db=Seg db_id=seg from=219 to=228)
seg (db=Seg db_id=seg from=140 to=155)
AMDSBA3_21_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25271..26338
DNA (1068bp) protein (356aa)
phenylalanyl-tRNA synthetase subunit alpha rbh
phenylalanyl-tRNA synthetase subunit alpha rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WFJ6_FUSMR (db=UNIREF evalue=1.2e-85 bit_score=322.4 identity=47.4 coverage=92.13483146067416)
seg (db=Seg db_id=seg from=70 to=86)
Displaying items 1-30 of 52 in total

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