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AMDSBA3_25

Alias: AMDSBA3_C24

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_25_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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195..629
-----------------
DNA (435bp)
protein (145aa)
BSCG--ribosomal--protein--L13
50S ribosomal protein L13
50S ribosomal protein L13 n=2 Tax=Clostridium kluyveri RepID=RL13_CLOK1 (db=UNIREF evalue=1.9e-45 bit_score=187.6 identity=59.9 coverage=97.24137931034483)
RIBOSOMAL_L13 (db=PatternScan db_id=PS00783 from=105 to=127 evalue=0.0 interpro_id=IPR023563 interpro_description=Ribosomal protein L13, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA3_25_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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629..1021
-----------------
DNA (393bp)
protein (131aa)
BSCG--ribosomal--protein--S9
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 n=21 Tax=Comamonadaceae RepID=RS9_ACIAC (db=UNIREF evalue=1.1e-25 bit_score=121.7 identity=51.6 coverage=93.89312977099237)
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=69 to=87 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA3_25_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1154..2422)
-----------------
DNA (1269bp)
protein (423aa)
XRE family transcriptional regulator
Transcriptional regulator, XRE family n=2 Tax=Sulfobacillus acidophilus RepID=F8I5T1_SULAT (db=UNIREF evalue=3.4e-55 bit_score=221.5 identity=46.1 coverage=65.95744680851064)
TPR-like (db=superfamily db_id=SSF48452 from=125 to=388 evalue=1.0e-16)
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=1 to=80 evalue=9.8e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBA3_25_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2504..3664
-----------------
DNA (1161bp)
protein (387aa)
polynucleotide adenylyltransferase region
Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REM2_9FIRM (db=UNIREF evalue=5.8e-25 bit_score=120.9 identity=37.9 coverage=52.71317829457365)
seg (db=Seg db_id=seg from=134 to=148)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=51 to=212 evalue=8.9e-28)
AMDSBA3_25_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3715..4449
-----------------
DNA (735bp)
protein (245aa)
amiA; N-acetylmuramoyl-L-alanine amidase
Cell surface protein n=1 Tax=Methanosarcina mazei Go1 RepID=Q8PUP2_METMA (db=UNIREF evalue=1.8e-16 bit_score=92.0 identity=31.7 coverage=84.08163265306122)
seg (db=Seg db_id=seg from=230 to=242)
seg (db=Seg db_id=seg from=11 to=26)
AMDSBA3_25_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4532..5431
-----------------
DNA (900bp)
protein (300aa)
arginase (EC:3.5.3.1) rbh
arginase (EC:3.5.3.1) rbh
Arginase n=2 Tax=Sulfobacillus acidophilus RepID=F8I695_SULAT (db=UNIREF evalue=1.6e-136 bit_score=491.1 identity=80.3 coverage=99.33333333333333)
AMDSBA3_25_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5448..6572
-----------------
DNA (1125bp)
protein (375aa)
amidohydrolase (EC:3.5.1.47)
Zinc metallopeptidase, putative n=3 Tax=Trichocomaceae RepID=B0Y804_ASPFC (db=UNIREF evalue=3.4e-46 bit_score=191.4 identity=35.5 coverage=90.66666666666666)
seg (db=Seg db_id=seg from=130 to=145)
amidohydrolases: amidohydrolase (db=HMMTigr db_id=TIGR01891 from=7 to=362 evalue=3.9e-141 interpro_id=IPR017439 interpro_description=Amidohydrolase GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA3_25_8
unknown

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7155..7337
-----------------
DNA (183bp)
protein (61aa)
seg (db=Seg db_id=seg from=39 to=49)
AMDSBA3_25_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7324..8310
-----------------
DNA (987bp)
protein (329aa)
transcriptional regulator/sugar kinase
Sugar kinase n=2 Tax=Streptomyces RepID=D6AZH6_9ACTO (db=UNIREF evalue=4.0e-11 bit_score=74.7 identity=32.1 coverage=48.328267477203646)
seg (db=Seg db_id=seg from=16 to=30)
seg (db=Seg db_id=seg from=45 to=62)
AMDSBA3_25_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8307..9197
-----------------
DNA (891bp)
protein (297aa)
1-phosphofructokinase (EC:2.7.1.56)
6-phosphofructokinase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C2L5_9BURK (db=UNIREF evalue=3.0e-21 bit_score=108.2 identity=28.8 coverage=97.3063973063973)
seg (db=Seg db_id=seg from=243 to=254)
PFKB_KINASES_1 (db=PatternScan db_id=PS00583 from=37 to=61 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBA3_25_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9194..10021
-----------------
DNA (828bp)
protein (276aa)
ketose-bisphosphate aldolase
Possible fructose-bisphosphate aldolase n=10 Tax=Lactobacillus RepID=C2K0M3_LACRH (db=UNIREF evalue=4.7e-29 bit_score=134.0 identity=31.4 coverage=85.86956521739131)
seg (db=Seg db_id=seg from=161 to=172)
Aldolase (db=superfamily db_id=SSF51569 from=1 to=275 evalue=6.9e-72)
AMDSBA3_25_12
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10222..10626
-----------------
DNA (405bp)
protein (135aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I9J7_SULAT (db=UNIREF evalue=4.2e-23 bit_score=113.2 identity=47.7 coverage=92.5925925925926)
Uncharacterised conserved protein, UCP021774 type (db=HMMPIR db_id=PIRSF021774 from=1 to=132 evalue=2.1e-39 interpro_id=IPR016796 interpro_description=Uncharacterised conserved protein UCP021774)
TT1751-like (db=superfamily db_id=SSF103247 from=5 to=130 evalue=3.2e-30 interpro_id=IPR005180 interpro_description=Domain of unknown function DUF302)
AMDSBA3_25_13
Bacillus smithii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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10871..12001
-----------------
DNA (1131bp)
protein (377aa)
transposase
Transposase, OrfB family, putative n=1 Tax=Methanosaeta concilii GP6 RepID=F4BX61_METCG (db=UNIREF evalue=1.7e-45 bit_score=189.1 identity=33.0 coverage=89.65517241379311)
(db=HMMPfam db_id=PF07282 from=290 to=359 evalue=2.9e-18 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
(db=HMMPfam db_id=PF01385 from=148 to=265 evalue=8.4e-16 interpro_id=IPR001959 interpro_description=Transposase, probable, IS891/IS1136/IS1341)
AMDSBA3_25_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12220..12681
-----------------
DNA (462bp)
protein (154aa)
ferric uptake regulator family protein
Ferric uptake regulation protein n=24 Tax=Bacillus RepID=FUR_BACSU (db=UNIREF evalue=2.5e-32 bit_score=144.1 identity=44.8 coverage=92.85714285714286)
seg (db=Seg db_id=seg from=107 to=121)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=142 evalue=4.7e-37)
AMDSBA3_25_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12750..13019
-----------------
DNA (270bp)
protein (90aa)
arsenate reductase
Arsenate reductase like protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXL2_9FIRM (db=UNIREF evalue=4.5e-13 bit_score=79.3 identity=48.1 coverage=87.77777777777777)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=4 to=88 evalue=1.2e-15 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
(db=HMMPfam db_id=PF03960 from=5 to=87 evalue=1.5e-15 interpro_id=IPR006660 interpro_description=Arsenate reductase-like)
AMDSBA3_25_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13016..14224)
-----------------
DNA (1209bp)
protein (403aa)
molybdenum cofactor synthesis domain-containing protein rbh
molybdenum cofactor synthesis domain-containing protein rbh
Molybdopterin biosynthesis protein MoeA n=2 Tax=Sulfobacillus acidophilus RepID=F8I699_SULAT (db=UNIREF evalue=1.2e-97 bit_score=362.5 identity=47.9 coverage=98.75930521091811)
AMDSBA3_25_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14217..14726)
-----------------
DNA (510bp)
protein (170aa)
molybdopterin guanine dinucleotide biosynthesis accessory protein MobB
Molybdopterin guanine dinucleotide biosynthesis accessory protein MobB n=2 Tax=Sulfobacillus acidophilus RepID=G8TXL4_9FIRM (db=UNIREF evalue=2.3e-26 bit_score=124.4 identity=39.6 coverage=92.94117647058823)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=110 evalue=5.0e-19)
(db=HMMPfam db_id=PF03205 from=3 to=113 evalue=2.7e-13)
AMDSBA3_25_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14723..15304)
-----------------
DNA (582bp)
protein (194aa)
seg (db=Seg db_id=seg from=87 to=101)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=187 evalue=4.9e-30)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=187 evalue=5.4e-16)
MobA (db=HAMAP db_id=MF_00316 from=2 to=186 evalue=20.403 interpro_id=IPR013482 interpro_description=Molybdopterin-guanine dinucleotide biosynthesis protein A GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777))
AMDSBA3_25_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15390..16115
-----------------
DNA (726bp)
protein (242aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z699_BREBN (db=UNIREF evalue=2.6e-23 bit_score=114.8 identity=29.5 coverage=88.01652892561982)
seg (db=Seg db_id=seg from=60 to=73)
HAD-like (db=superfamily db_id=SSF56784 from=3 to=239 evalue=1.5e-30 interpro_id=IPR023214 interpro_description=HAD-like domain)
AMDSBA3_25_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16267..16842)
-----------------
DNA (576bp)
protein (192aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSU2_9FIRM (db=UNIREF evalue=9.4e-69 bit_score=265.4 identity=64.6 coverage=97.91666666666666)
seg (db=Seg db_id=seg from=151 to=167)
seg (db=Seg db_id=seg from=116 to=140)
AMDSBA3_25_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17252..18103)
-----------------
DNA (852bp)
protein (284aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY10_9FIRM (db=UNIREF evalue=6.5e-143 bit_score=512.3 identity=88.4 coverage=99.29577464788733)
AMDSBA3_25_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18505..19068
-----------------
DNA (564bp)
protein (188aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY11_9FIRM (db=UNIREF evalue=6.4e-62 bit_score=242.7 identity=62.0 coverage=98.93617021276596)
coiled-coil (db=Coil db_id=coil from=119 to=147 evalue=NA)
coiled-coil (db=Coil db_id=coil from=161 to=182 evalue=NA)
AMDSBA3_25_23
unknown

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comp(19203..19370)
-----------------
DNA (168bp)
protein (56aa)
19203..19370 - ( gc_cont=0.488)
AMDSBA3_25_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19399..20250
-----------------
DNA (852bp)
protein (284aa)
rubrerythrin
Rubrerythrin n=2 Tax=Sulfobacillus acidophilus RepID=G8TY12_9FIRM (db=UNIREF evalue=1.6e-56 bit_score=225.3 identity=48.9 coverage=89.7887323943662)
Ferritin-like (db=superfamily db_id=SSF47240 from=1 to=137 evalue=1.6e-20 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=1 to=127 evalue=8.6e-16 interpro_id=IPR012347 interpro_description=Ferritin-related)
AMDSBA3_25_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20228..21067
-----------------
DNA (840bp)
protein (280aa)
Linocin_M18 bacteriocin protein
Linocin_M18 bacteriocin protein
Linocin_M18 bacteriocin protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY13_9FIRM (db=UNIREF evalue=9.1e-89 bit_score=332.4 identity=59.2 coverage=98.57142857142858)
AMDSBA3_25_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21117..21671
-----------------
DNA (555bp)
protein (185aa)
hypothetical protein
8-oxo-dGTPase n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3AQ67_CHLCH (db=UNIREF evalue=3.6e-17 bit_score=94.0 identity=32.3 coverage=82.70270270270271)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=90 to=111 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=21 to=180 evalue=2.6e-40 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA3_25_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21874..22320)
-----------------
DNA (447bp)
protein (149aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY15_9FIRM (db=UNIREF evalue=3.3e-21 bit_score=107.1 identity=45.0 coverage=85.23489932885906)
seg (db=Seg db_id=seg from=120 to=136)
seg (db=Seg db_id=seg from=72 to=85)
AMDSBA3_25_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22317..22595)
-----------------
DNA (279bp)
protein (93aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=11 to=27)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6B1_SULAT
AMDSBA3_25_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22860..23990
-----------------
DNA (1131bp)
protein (377aa)
group 1 glycosyl transferase rbh
group 1 glycosyl transferase rbh
Glycosyl transferase group 1 n=2 Tax=Sulfobacillus acidophilus RepID=G8TY17_9FIRM (db=UNIREF evalue=3.1e-172 bit_score=610.1 identity=79.2 coverage=99.20424403183023)
AMDSBA3_25_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23987..24412
-----------------
DNA (426bp)
protein (142aa)
GtrA family protein
GtrA family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY18_9FIRM (db=UNIREF evalue=1.4e-56 bit_score=224.6 identity=77.3 coverage=98.59154929577466)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=58)
Displaying items 1-30 of 49 in total

View Taxonomy