ggKbase home page

AMDSBA3_27

Alias: AMDSBA3_C26

Search features with annotation key words

Displaying items 1-30 of 42 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_27_1
unknown

Not on your lists

2..100
DNA (99bp) protein (33aa)
2..100 + ( gc_cont=0.566)
AMDSBA3_27_2
unknown

Not on your lists

107..274
DNA (168bp) protein (56aa)
107..274 + ( gc_cont=0.518)
AMDSBA3_27_3
Aminomonas paucivorans, Aminomonas, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

609..815
DNA (207bp) protein (69aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DGJ5_9RHIZ (db=UNIREF evalue=7.9e-10 bit_score=68.2 identity=52.2 coverage=92.7536231884058)
(db=HMMPfam db_id=PF11455 from=5 to=67 evalue=5.1e-29 interpro_id=IPR021558 interpro_description=Protein of unknown function DUF3018)
Uncharacterized protein {ECO:0000313|EMBL:EFQ24621.1}; TaxID=584708 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminomonas.;" source="Aminomonas paucivorans DSM 12260
AMDSBA3_27_4
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

1408..1659
DNA (252bp) protein (84aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQZ4_9GAMM (db=UNIREF evalue=1.5e-07 bit_score=60.8 identity=41.8 coverage=78.57142857142857)
(db=HMMPfam db_id=PF04255 from=14 to=69 evalue=1.9e-24 interpro_id=IPR007367 interpro_description=Protein of unknown function DUF433)
Homeodomain-like (db=superfamily db_id=SSF46689 from=4 to=83 evalue=2.8e-21 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
AMDSBA3_27_5
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

1643..2026
DNA (384bp) protein (128aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanoregula boonei 6A8 RepID=A7I976_METB6 (db=UNIREF evalue=6.8e-23 bit_score=112.5 identity=48.7 coverage=90.625)
(db=HMMPfam db_id=PF01927 from=8 to=64 evalue=7.7e-07 interpro_id=IPR002782 interpro_description=Protein of unknown function DUF82)
Protein of unknown function DUF82 Tax=CG_Arma_01
AMDSBA3_27_6
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2312..2689)
DNA (378bp) protein (126aa)
PilT protein domain-containing protein
PilT protein domain-containing protein n=2 Tax=Streptomyces filamentosus RepID=D6ATN7_STRFL (db=UNIREF evalue=3.0e-15 bit_score=87.0 identity=38.2 coverage=96.03174603174604)
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=124 evalue=5.6e-16)
(db=HMMPfam db_id=PF01850 from=3 to=117 evalue=1.7e-07 interpro_id=IPR002716 interpro_description=PilT protein, N-terminal)
AMDSBA3_27_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2689..2931)
DNA (243bp) protein (81aa)
prevent-host-death family protein
Prevent-host-death protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V913_9RHOB (db=UNIREF evalue=1.8e-08 bit_score=63.9 identity=43.2 coverage=95.06172839506173)
seg (db=Seg db_id=seg from=37 to=50)
(db=HMMPfam db_id=PF02604 from=1 to=42 evalue=1.1e-13 interpro_id=IPR006442 interpro_description=Bacteriophage P1, prevent-host-death protein)
AMDSBA3_27_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3123..8465)
DNA (5343bp) protein (1781aa)
ribonucleoside-diphosphate reductase class II (EC:1.17.4.-)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGU0_9BURK (db=UNIREF evalue=7.7e-56 bit_score=225.7 identity=33.3 coverage=26.72655811341943)
seg (db=Seg db_id=seg from=401 to=415)
seg (db=Seg db_id=seg from=1190 to=1204)
AMDSBA3_27_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8485..8952)
DNA (468bp) protein (156aa)
nrdR; ATP-cone domain-containing protein
Transcriptional repressor NrdR n=2 Tax=Chloroflexus RepID=NRDR_CHLAA (db=UNIREF evalue=4.7e-42 bit_score=176.4 identity=52.3 coverage=98.71794871794873)
seg (db=Seg db_id=seg from=26 to=37)
seg (db=Seg db_id=seg from=80 to=96)
AMDSBA3_27_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9109..9288)
DNA (180bp) protein (60aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS88_9FIRM (db=UNIREF evalue=1.1e-12 bit_score=77.4 identity=54.2 coverage=96.66666666666667)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=55)
seg (db=Seg db_id=seg from=22 to=38)
AMDSBA3_27_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9342..12005)
DNA (2664bp) protein (888aa)
outer membrane protein rbh
Dolichyl-phosphate-mannose--protein O-mannosyl transferase PMT1 n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CM17_CORST (db=UNIREF evalue=1.4e-37 bit_score=164.1 identity=28.3 coverage=50.22522522522522)
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
transmembrane_regions (db=TMHMM db_id=tmhmm from=231 to=253)
AMDSBA3_27_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12037..12540)
DNA (504bp) protein (168aa)
hypothetical protein
(db=HMMPfam db_id=PF04461 from=5 to=165 evalue=1.1e-53 interpro_id=IPR007551 interpro_description=Protein of unknown function DUF520)
YajQ-like (db=superfamily db_id=SSF89963 from=93 to=166 evalue=4.5e-26)
no description (db=Gene3D db_id=G3DSA:3.30.70.860 from=96 to=166 evalue=2.0e-22)
AMDSBA3_27_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12543..12941)
DNA (399bp) protein (133aa)
CoA-binding domain-containing protein
Putative uncharacterized protein n=1 Tax=Thermococcus barophilus MP RepID=F0LLD2_THEBM (db=UNIREF evalue=4.4e-25 bit_score=119.8 identity=46.2 coverage=96.99248120300751)
seg (db=Seg db_id=seg from=61 to=72)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=1 to=129 evalue=4.9e-42 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
AMDSBA3_27_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13072..13701
DNA (630bp) protein (210aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7C0_SULAT (db=UNIREF evalue=4.1e-41 bit_score=173.7 identity=44.1 coverage=95.23809523809523)
hypothetical protein
seg (db=Seg db_id=seg from=150 to=177)
seg (db=Seg db_id=seg from=102 to=113)
AMDSBA3_27_15
Salimicrobium jeotgali, Salimicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13930..15087)
DNA (1158bp) protein (386aa)
acyl-CoA transferase/carnitine dehydratase
Alpha-methylacyl-CoA racemase (2-methylacyl-CoA racemase) n=2 Tax=Frankia RepID=Q0RK47_FRAAA (db=UNIREF evalue=4.4e-41 bit_score=174.5 identity=34.5 coverage=81.86528497409327)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=1 to=385 evalue=5.8e-108 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
ALPHA METHYLACYL-COA RACEMASE (db=HMMPanther db_id=PTHR11837 from=15 to=372 evalue=3.2e-93 interpro_id=IPR003673 interpro_description=CoA-transferase family III GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA3_27_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15199..17532)
DNA (2334bp) protein (778aa)
peptidase S16 lon domain-containing protein
peptidase S16 lon domain-containing protein
Archaeal Lon protease n=2 Tax=Halobacterium salinarum RepID=LONB_HALSA (db=UNIREF evalue=3.3e-19 bit_score=102.8 identity=25.9 coverage=59.12596401028277)
seg (db=Seg db_id=seg from=469 to=480)
AMDSBA3_27_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17704..18855)
DNA (1152bp) protein (384aa)
acyltransferase 3
acyltransferase 3
Acyltransferase 3 n=2 Tax=Sulfobacillus acidophilus RepID=G8TSC6_9FIRM (db=UNIREF evalue=4.1e-116 bit_score=423.7 identity=56.3 coverage=96.61458333333334)
AMDSBA3_27_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18843..20285)
DNA (1443bp) protein (481aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26) rbh
AMP-dependent synthetase and ligase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUI0_METHJ (db=UNIREF evalue=1.3e-29 bit_score=136.7 identity=24.7 coverage=86.9022869022869)
AMP_BINDING (db=PatternScan db_id=PS00455 from=133 to=144 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=5 to=474 evalue=1.8e-120)
AMDSBA3_27_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20309..21658)
DNA (1350bp) protein (450aa)
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TRW3_9CHLR (db=UNIREF evalue=3.7e-100 bit_score=370.9 identity=42.6 coverage=96.66666666666667)
seg (db=Seg db_id=seg from=405 to=423)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
AMDSBA3_27_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21778..22527)
DNA (750bp) protein (250aa)
hypothetical protein
CCC1-related iron/manganese transporter component n=2 Tax=Sulfobacillus acidophilus RepID=F8I7W6_SULAT (db=UNIREF evalue=1.4e-67 bit_score=261.9 identity=57.6 coverage=94.8)
seg (db=Seg db_id=seg from=195 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=222 to=244)
AMDSBA3_27_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22564..23046)
DNA (483bp) protein (161aa)
NUDIX hydrolase
NUDIX hydrolase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M337_9FIRM (db=UNIREF evalue=1.9e-22 bit_score=111.3 identity=41.3 coverage=90.06211180124224)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=60 to=81 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=29 to=160 evalue=1.9e-27 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA3_27_22
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23210..24109
DNA (900bp) protein (300aa)
dihydrodipicolinate synthetase
Dihydrodipicolinate synthetase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KNT5_9BURK (db=UNIREF evalue=4.8e-43 bit_score=180.6 identity=39.1 coverage=96.66666666666667)
seg (db=Seg db_id=seg from=276 to=292)
seg (db=Seg db_id=seg from=262 to=273)
AMDSBA3_27_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24053..25303)
DNA (1251bp) protein (417aa)
hypothetical protein rbh
Fe-S oxidoreductase n=1 Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUK4_9BACT (db=UNIREF evalue=1.3e-17 bit_score=96.7 identity=46.5 coverage=25.65947242206235)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=66 to=77 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=15 to=26 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA3_27_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25309..25899)
DNA (591bp) protein (197aa)
Peptide deformylase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSD2_9FIRM (db=UNIREF evalue=8.4e-81 bit_score=305.4 identity=71.4 coverage=98.98477157360406)
peptide deformylase (EC:3.5.1.88) rbh
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=167 evalue=1.6e-41 interpro_id=IPR023635 interpro_description=Peptide deformylase)
AMDSBA3_27_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25902..26261)
DNA (360bp) protein (120aa)
Small primase-like protein
Small primase-like protein protein (Toprim domain)-like protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7X0_SULAT (db=UNIREF evalue=9.8e-40 bit_score=168.3 identity=72.6 coverage=87.5)
seg (db=Seg db_id=seg from=62 to=67)
Toprim domain (db=superfamily db_id=SSF110455 from=5 to=112 evalue=5.9e-21)
AMDSBA3_27_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26393..27280
DNA (888bp) protein (296aa)
oxidoreductase
Aldo/keto reductase n=1 Tax=Colletotrichum higginsianum RepID=H1VD21_9PEZI (db=UNIREF evalue=2.7e-22 bit_score=111.7 identity=29.9 coverage=89.1891891891892)
ALDOKETO_REDUCTASE_2 (db=PatternScan db_id=PS00062 from=137 to=154 evalue=0.0 interpro_id=IPR018170 interpro_description=Aldo/keto reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
NAD(P)-linked oxidoreductase (db=superfamily db_id=SSF51430 from=12 to=282 evalue=4.1e-71 interpro_id=IPR023210 interpro_description=NADP-dependent oxidoreductase domain)
AMDSBA3_27_27
unknown

Not on your lists

27331..28071
DNA (741bp) protein (247aa)
seg (db=Seg db_id=seg from=101 to=114)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=3 to=225 evalue=1.9e-19)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=101 to=237 evalue=4.1e-06)
(db=HMMPfam db_id=PF00756 from=101 to=208 evalue=4.2e-06 interpro_id=IPR000801 interpro_description=Putative esterase)
AMDSBA3_27_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28196..29890)
DNA (1695bp) protein (565aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26) rbh
O-succinylbenzoate--CoA ligase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSD5_9FIRM (db=UNIREF evalue=2.4e-253 bit_score=880.2 identity=73.9 coverage=98.93805309734513)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=26 to=559 evalue=1.8e-111)
AMDSBA3_27_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30321..31496)
DNA (1176bp) protein (392aa)
gcdH; acyl-CoA dehydrogenase rbh
Glutaryl-CoA dehydrogenase, mitochondrial n=1 Tax=Bos taurus RepID=GCDH_BOVIN (db=UNIREF evalue=2.8e-91 bit_score=341.3 identity=46.3 coverage=96.1734693877551)
ACYL_COA_DH_2 (db=PatternScan db_id=PS00073 from=344 to=363 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_27_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31500..32666)
DNA (1167bp) protein (389aa)
L-carnitine dehydratase/bile acid-inducible protein F
Crotonobetainyl-CoA n=16 Tax=Burkholderia RepID=A2VV46_9BURK (db=UNIREF evalue=1.7e-64 bit_score=252.3 identity=38.9 coverage=97.42930591259639)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=2 to=376 evalue=3.4e-123 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
ALPHA METHYLACYL-COA RACEMASE (db=HMMPanther db_id=PTHR11837 from=17 to=375 evalue=4.6e-103 interpro_id=IPR003673 interpro_description=CoA-transferase family III GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Displaying items 1-30 of 42 in total

View Taxonomy