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AMDSBA3_32

Alias: AMDSBA3_C31

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_32_1
unknown

Not on your lists

comp(1..168)
-----------------
DNA (168bp)
protein (56aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBA3_32_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(477..2225)
-----------------
DNA (1749bp)
protein (583aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1I7_9FIRM (db=UNIREF evalue=2.4e-160 bit_score=571.2 identity=50.4 coverage=94.33962264150944)
seg (db=Seg db_id=seg from=490 to=501)
seg (db=Seg db_id=seg from=160 to=176)
AMDSBA3_32_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2585..3313)
-----------------
DNA (729bp)
protein (243aa)
Creatininase n=2 Tax=Sulfobacillus acidophilus RepID=G8TXM3_9FIRM (db=UNIREF evalue=8.8e-80 bit_score=302.4 identity=57.4 coverage=99.1769547325103)
creatininase
(db=HMMPfam db_id=PF02633 from=3 to=231 evalue=2.2e-54 interpro_id=IPR003785 interpro_description=Creatininase/formamide hydrolase)
Creatininase (db=superfamily db_id=SSF102215 from=1 to=235 evalue=1.7e-51 interpro_id=IPR024087 interpro_description=Creatininase-like domain)
AMDSBA3_32_4
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3638..4204)
-----------------
DNA (567bp)
protein (189aa)
ATP/cobalamin adenosyltransferase
ATP:cob(I)alamin adenosyltransferase n=4 Tax=Streptomyces RepID=B5GI15_9ACTO (db=UNIREF evalue=9.7e-26 bit_score=122.5 identity=44.6 coverage=94.17989417989418)
seg (db=Seg db_id=seg from=126 to=145)
PduO_Nterm: ATP:cob(I)alamin adenosyltrans (db=HMMTigr db_id=TIGR00636 from=4 to=181 evalue=2.4e-57 interpro_id=IPR017858 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity (GO:0008817), Biological Process: cobalamin biosynthetic process (GO:0009236))
AMDSBA3_32_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4201..5988)
-----------------
DNA (1788bp)
protein (596aa)
cobU; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=D5ST98_PLAL2 (db=UNIREF evalue=3.2e-51 bit_score=208.8 identity=39.8 coverage=55.369127516778526)
seg (db=Seg db_id=seg from=247 to=258)
seg (db=Seg db_id=seg from=268 to=286)
AMDSBA3_32_6
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5988..6770)
-----------------
DNA (783bp)
protein (261aa)
periplasmic binding protein
substrate-binding protein n=1 Tax=Pseudomonas sp. S9 RepID=UPI000255707B (db=UNIREF evalue=1.3e-44 bit_score=185.7 identity=42.3 coverage=97.70114942528735)
"Helical backbone" metal receptor (db=superfamily db_id=SSF53807 from=4 to=256 evalue=2.7e-46)
(db=HMMPfam db_id=PF01497 from=8 to=236 evalue=8.2e-40 interpro_id=IPR002491 interpro_description=ABC transporter, periplasmic binding protein GO=Molecular Function: binding (GO:0005488))
AMDSBA3_32_7
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6754..8292)
-----------------
DNA (1539bp)
protein (513aa)
cobalamin biosynthesis protein CobQ
cobalamin biosynthesis protein CobQ
Cobyric acid synthase n=8 Tax=Bacteroides RepID=COBQ_BACFN (db=UNIREF evalue=2.0e-105 bit_score=388.7 identity=43.0 coverage=94.15204678362574)
seg (db=Seg db_id=seg from=149 to=160)
AMDSBA3_32_8
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8277..9386)
-----------------
DNA (1110bp)
protein (370aa)
AA_TRANSFER_CLASS_1 (db=PatternScan db_id=PS00105 from=214 to=227 evalue=0.0 interpro_id=IPR004838 interpro_description=Aminotransferases, class-I, pyridoxal-phosphate-binding site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058), Molecular Function: pyridoxal phosphate binding (GO:0030170))
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=3 to=359 evalue=7.5e-73 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
HISTIDINOL-PHOSPHATE AMINOTRANSFERASE (db=HMMPanther db_id=PTHR11751:SF3 from=40 to=361 evalue=1.2e-56)
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=40 to=361 evalue=1.2e-56)
AMDSBA3_32_9
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9376..10137)
-----------------
DNA (762bp)
protein (254aa)
hypothetical protein
Cobalamin synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLB8_9FIRM (db=UNIREF evalue=1.4e-27 bit_score=129.0 identity=33.7 coverage=95.66929133858267)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=219)
transmembrane_regions (db=TMHMM db_id=tmhmm from=229 to=251)
AMDSBA3_32_10
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10134..11093)
-----------------
DNA (960bp)
protein (320aa)
cobalamin biosynthesis protein
Cobalamin biosynthesis protein CobD n=9 Tax=Yersinia RepID=COBD_YERE8 (db=UNIREF evalue=8.3e-62 bit_score=243.0 identity=43.4 coverage=95.9375)
transmembrane_regions (db=TMHMM db_id=tmhmm from=296 to=318)
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=103)
AMDSBA3_32_11
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11087..11881)
-----------------
DNA (795bp)
protein (265aa)
adenosylcobinamide kinase (EC:2.7.1.156)
Cobalbumin biosynthesis protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=D3RU94_ALLVD (db=UNIREF evalue=6.3e-15 bit_score=87.0 identity=32.0 coverage=64.52830188679245)
(db=HMMPfam db_id=PF02283 from=88 to=257 evalue=2.0e-56 interpro_id=IPR003203 interpro_description=Cobinamide kinase/cobinamide phosphate guanyltransferase GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: adenosylcobinamide kinase activity (GO:0043752), Biological Process: cofactor biosynthetic process (GO:0051188))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=87 to=258 evalue=2.9e-52)
AMDSBA3_32_12
Jeotgalibacillus sp. D5, Jeotgalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12145..13509)
-----------------
DNA (1365bp)
protein (455aa)
cobyrinic acid a,c-diamide synthase (EC:6.3.3.3)
cobyrinic acid a,c-diamide synthase (EC:6.3.3.3)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HLW9_CYAP4 (db=UNIREF evalue=3.0e-81 bit_score=308.1 identity=41.1 coverage=97.36263736263736)
AMDSBA3_32_13
Planococcus halocryophilus, Planococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13717..14955)
-----------------
DNA (1239bp)
protein (413aa)
peptidase M20 family protein
N-acyl-L-amino acid amidohydrolase n=4 Tax=Bacillus RepID=C2W9N7_BACCE (db=UNIREF evalue=7.7e-68 bit_score=263.5 identity=39.5 coverage=89.34624697336562)
seg (db=Seg db_id=seg from=159 to=165)
Predicted amidohydrolase, ACY1L2 like (db=HMMPIR db_id=PIRSF037226 from=27 to=408 evalue=3.1e-142 interpro_id=IPR017144 interpro_description=Peptidase M20D, amidohydrolase, predicted)
AMDSBA3_32_14
unknown

Not on your lists

comp(15052..16383)
-----------------
DNA (1332bp)
protein (444aa)
seg (db=Seg db_id=seg from=45 to=55)
seg (db=Seg db_id=seg from=27 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
AMDSBA3_32_15
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16609..17700
-----------------
DNA (1092bp)
protein (364aa)
idi; isopentenyl-diphosphate delta-isomerase rbh
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Acidilobus saccharovorans 345-15 RepID=D9Q0A0_ACIS3 (db=UNIREF evalue=1.1e-52 bit_score=213.0 identity=35.6 coverage=92.3076923076923)
seg (db=Seg db_id=seg from=250 to=262)
seg (db=Seg db_id=seg from=206 to=217)
AMDSBA3_32_16
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17809..18819
-----------------
DNA (1011bp)
protein (337aa)
hopanoid biosynthesis associated radical SAM protein HpnH rbh
hopanoid biosynthesis associated radical SAM protein HpnH rbh
Putative radical SAM domain-containing protein, 3' end n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHN6_9BACT (db=UNIREF evalue=2.3e-25 bit_score=122.1 identity=39.6 coverage=45.40059347181009)
HpnH: hopanoid biosynthesis associated radic (db=HMMTigr db_id=TIGR03470 from=1 to=320 evalue=4.4e-155 interpro_id=IPR017833 interpro_description=Hopanoid biosynthesis associated radical SAM protein HpnH)
AMDSBA3_32_17
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18906..19406
-----------------
DNA (501bp)
protein (167aa)
Purine and uridine phosphorylases (db=superfamily db_id=SSF53167 from=1 to=127 evalue=1.8e-15)
no description (db=Gene3D db_id=G3DSA:3.40.50.1580 from=1 to=151 evalue=1.5e-11)
(db=HMMPfam db_id=PF01048 from=70 to=125 evalue=3.2e-07 interpro_id=IPR000845 interpro_description=Nucleoside phosphorylase domain GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: nucleoside metabolic process (GO:0009116))
(db=HMMPfam db_id=PF01048 from=2 to=51 evalue=2.2e-05 interpro_id=IPR000845 interpro_description=Nucleoside phosphorylase domain GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: nucleoside metabolic process (GO:0009116))
AMDSBA3_32_18
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19394..20416
-----------------
DNA (1023bp)
protein (341aa)
dihydroflavonol 4-reductase (EC:1.1.1.219)
Putative dihydroflavonol 4-reductase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y729_COPPD (db=UNIREF evalue=4.3e-32 bit_score=144.4 identity=27.8 coverage=96.48093841642229)
HpnA: hopanoid-associated sugar epimerase (db=HMMTigr db_id=TIGR03466 from=1 to=329 evalue=2.4e-131 interpro_id=IPR017829 interpro_description=Hopanoid-associated sugar epimerase)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=325 evalue=5.9e-84)
AMDSBA3_32_19
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20460..22358
-----------------
DNA (1899bp)
protein (633aa)
shc; squalene-hopene cyclase
shc; squalene-hopene cyclase
Squalene-hopene cyclase n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BPY1_TERTT (db=UNIREF evalue=9.1e-153 bit_score=546.2 identity=45.0 coverage=94.3127962085308)
AMDSBA3_32_20
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22355..23215
-----------------
DNA (861bp)
protein (287aa)
squalene synthase (EC:2.5.1.32)
Putative squalene/phytoene synthase n=1 Tax=Streptomyces hygroscopicus subsp. jinggangensis 5008 RepID=H2JTK0_STRHJ (db=UNIREF evalue=1.3e-21 bit_score=109.4 identity=34.3 coverage=80.13937282229965)
HpnC: squalene synthase HpnC (db=HMMTigr db_id=TIGR03464 from=21 to=285 evalue=3.1e-90 interpro_id=IPR017827 interpro_description=Squalene synthase HpnC)
Terpenoid synthases (db=superfamily db_id=SSF48576 from=13 to=286 evalue=2.5e-72 interpro_id=IPR008949 interpro_description=Terpenoid synthase)
AMDSBA3_32_21
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23301..24158
-----------------
DNA (858bp)
protein (286aa)
crtB; phytoene synthase
Phytoene synthase n=1 Tax=Sphingomonas elodea ATCC 31461 RepID=G5CN59_SPHEL (db=UNIREF evalue=7.8e-19 bit_score=100.1 identity=31.7 coverage=95.45454545454545)
seg (db=Seg db_id=seg from=239 to=250)
SQUALEN_PHYTOEN_SYN_2 (db=PatternScan db_id=PS01045 from=158 to=183 evalue=0.0 interpro_id=IPR019845 interpro_description=Squalene/phytoene synthase, conserved site GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
AMDSBA3_32_22
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24158..25495
-----------------
DNA (1338bp)
protein (446aa)
squalene-associated FAD-dependent desaturase
Squalene-associated FAD-dependent desaturase n=2 Tax=Methylobacterium extorquens group RepID=B7L302_METC4 (db=UNIREF evalue=1.1e-08 bit_score=67.0 identity=37.0 coverage=22.421524663677133)
seg (db=Seg db_id=seg from=194 to=210)
seg (db=Seg db_id=seg from=354 to=365)
AMDSBA3_32_23
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25528..26628
-----------------
DNA (1101bp)
protein (367aa)
monogalactosyldiacylglycerol synthase (EC:2.4.1.46)
Monogalactosyldiacylglycerol synthase n=2 Tax=Desulfotomaculum RepID=F0DJD4_9FIRM (db=UNIREF evalue=1.3e-37 bit_score=162.9 identity=32.2 coverage=97.27520435967303)
seg (db=Seg db_id=seg from=322 to=332)
GLYCOSYLTRANSFERASE 1 FAMILY (db=HMMPanther db_id=PTHR21015:SF21 from=82 to=328 evalue=1.6e-40)
AMDSBA3_32_24
unknown

Not on your lists

comp(26806..28041)
-----------------
DNA (1236bp)
protein (412aa)
seg (db=Seg db_id=seg from=8 to=27)
AMDSBA3_32_25
Serratia sp. ATCC 39006, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28394..29785
-----------------
DNA (1392bp)
protein (464aa)
permease for cytosine/purines uracil thiamine allantoin
Permease for cytosine/purines uracil thiamine allantoin n=3 Tax=Alicyclobacillus acidocaldarius RepID=F8IKT4_ALIAT (db=UNIREF evalue=7.1e-54 bit_score=217.2 identity=31.4 coverage=79.09482758620689)
seg (db=Seg db_id=seg from=149 to=166)
transmembrane_regions (db=TMHMM db_id=tmhmm from=423 to=445)
AMDSBA3_32_26
unknown

Not on your lists

comp(29766..30065)
-----------------
DNA (300bp)
protein (100aa)
29766..30065 - ( gc_cont=0.543)
AMDSBA3_32_27
Lysinibacillus manganicus, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30401..31783)
-----------------
DNA (1383bp)
protein (461aa)
allantoinase rbh
Allantoinase n=1 Tax=Bacillus clausii KSM-K16 RepID=ALLB_BACSK (db=UNIREF evalue=1.7e-148 bit_score=531.6 identity=57.0 coverage=96.31236442516268)
seg (db=Seg db_id=seg from=247 to=256)
AMDSBA3_32_28
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31890..33302)
-----------------
DNA (1413bp)
protein (471aa)
cytosine/purines uracil thiamine allantoin permease
cytosine/purines uracil thiamine allantoin permease
Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8RX32_9CLOT (db=UNIREF evalue=1.9e-78 bit_score=298.9 identity=35.3 coverage=93.20594479830149)
seg (db=Seg db_id=seg from=409 to=421)
AMDSBA3_32_29
Bacillus vireti, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33339..34685)
-----------------
DNA (1347bp)
protein (449aa)
pucH; allantoinase (EC:3.5.2.5)
Amidohydrolase n=2 Tax=Mannheimia haemolytica serotype A2 RepID=E2P441_PASHA (db=UNIREF evalue=3.8e-68 bit_score=264.6 identity=33.1 coverage=96.43652561247215)
DIHYDROOROTASE_1 (db=PatternScan db_id=PS00482 from=62 to=70 evalue=0.0 interpro_id=IPR002195 interpro_description=Dihydroorotase, conserved site GO=Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides (GO:0016812))
allantoinase: allantoinase (db=HMMTigr db_id=TIGR03178 from=6 to=445 evalue=4.7e-212 interpro_id=IPR017593 interpro_description=Allantoinase GO=Biological Process: allantoin catabolic process (GO:0000256), Molecular Function: allantoinase activity (GO:0004038), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: cobalt ion binding (GO:0050897))
AMDSBA3_32_30
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35012..36646)
-----------------
DNA (1635bp)
protein (545aa)
ggt2; gamma-glutamyltranspeptidase (EC:2.3.2.2)
Gamma-glutamyltranspeptidase (Probable) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RR81_9PROT (db=UNIREF evalue=3.3e-42 bit_score=178.7 identity=29.3 coverage=96.5137614678899)
N-terminal nucleophile aminohydrolases (Ntn hydrolases) (db=superfamily db_id=SSF56235 from=4 to=537 evalue=1.7e-147)
seg (db=Seg db_id=seg from=332 to=344)
Displaying items 1-30 of 44 in total

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