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AMDSBA3_33

Alias: AMDSBA3_C32

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Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_33_1
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(536..895)
DNA (360bp) protein (120aa)
536..895 - ( gc_cont=0.481)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM42968.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus
AMDSBA3_33_2
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(892..1188)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Desulfosporosinus acidiphilus SJ4 RepID=I4DAZ5_9FIRM (db=UNIREF evalue=2.5e-17 bit_score=93.6 identity=48.4 coverage=89.8989898989899)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM42969.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus
AMDSBA3_33_3

Not on your lists

comp(1476..2075)
DNA (600bp) protein (200aa)
transposase IS204/IS1001/IS1096/IS1165 family protein
(db=HMMPfam db_id=PF01610 from=2 to=47 evalue=4.0e-09 interpro_id=IPR002560 interpro_description=Transposase, IS204/IS1001/IS1096/IS1165 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Transposase {ECO:0000313|EMBL:BAL56713.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
AMDSBA3_33_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2224..3894
DNA (1671bp) protein (557aa)
GerA spore germination protein
Spore germination protein XA n=5 Tax=Bacillus cereus RepID=C2PWT9_BACCE (db=UNIREF evalue=1.7e-54 bit_score=219.5 identity=29.3 coverage=71.45421903052065)
seg (db=Seg db_id=seg from=415 to=433)
transmembrane_regions (db=TMHMM db_id=tmhmm from=468 to=490)
AMDSBA3_33_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3888..4988
DNA (1101bp) protein (367aa)
hypothetical protein
Spore germination protein, GerC family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7S5_SULAT (db=UNIREF evalue=3.2e-65 bit_score=254.6 identity=38.8 coverage=96.45776566757493)
(db=HMMPfam db_id=PF05504 from=220 to=334 evalue=1.1e-07 interpro_id=IPR008844 interpro_description=Spore germination GerAC GO=Biological Process: spore germination (GO:0009847), Cellular Component: membrane (GO:0016020))
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=23 evalue=7.0)
AMDSBA3_33_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4991..6094
DNA (1104bp) protein (368aa)
Spore germination protein
Spore germination protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTF0_9FIRM (db=UNIREF evalue=7.1e-41 bit_score=173.7 identity=31.0 coverage=91.84782608695652)
seg (db=Seg db_id=seg from=311 to=323)
seg (db=Seg db_id=seg from=150 to=161)
AMDSBA3_33_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6295..7017
DNA (723bp) protein (241aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=16 to=206 evalue=3.0e-25)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=34 to=185 evalue=1.8e-17)
(db=HMMPfam db_id=PF01209 from=13 to=222 evalue=4.5e-13 interpro_id=IPR004033 interpro_description=UbiE/COQ5 methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=10 to=157 evalue=7.2e-08)
AMDSBA3_33_8
Rhodococcus triatomae, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7115..7567
DNA (453bp) protein (151aa)
transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WUG4_HALHL (db=UNIREF evalue=1.1e-08 bit_score=65.5 identity=31.4 coverage=84.10596026490066)
HTH_RRF2_1 (db=PatternScan db_id=PS01332 from=47 to=65 evalue=0.0 interpro_id=IPR000944 interpro_description=Transcription regulator Rrf2-like)
rrf2_super: rrf2 family protein (putative (db=HMMTigr db_id=TIGR00738 from=1 to=130 evalue=5.9e-39 interpro_id=IPR000944 interpro_description=Transcription regulator Rrf2-like)
AMDSBA3_33_9
unknown

Not on your lists

7802..8074
DNA (273bp) protein (91aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=45)
seg (db=Seg db_id=seg from=28 to=41)
AMDSBA3_33_10
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(8216..8737)
DNA (522bp) protein (174aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFB4_9BACT (db=UNIREF evalue=4.4e-33 bit_score=146.7 identity=45.6 coverage=89.65517241379311)
(db=HMMPfam db_id=PF07799 from=21 to=151 evalue=1.5e-47 interpro_id=IPR012441 interpro_description=Bacteriophage D3, Orf41.6)
Uncharacterized protein {ECO:0000313|EMBL:AGY59282.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
AMDSBA3_33_11
Paenibacillus sp. IHB B 3415, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10109..10945
DNA (837bp) protein (279aa)
short-chain dehydrogenase
Oxidoreductase short-chain dehydrogenase/reductase family n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P5Y4_VIBME (db=UNIREF evalue=6.2e-21 bit_score=107.1 identity=34.8 coverage=72.04301075268818)
seg (db=Seg db_id=seg from=145 to=170)
SHORT-CHAIN DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR19410:SF46 from=2 to=260 evalue=1.1e-71)
AMDSBA3_33_12
unknown

Not on your lists

11168..11488
DNA (321bp) protein (107aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
AMDSBA3_33_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11500..12012)
DNA (513bp) protein (171aa)
NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit 6 n=9 Tax=Thermaceae RepID=NQO6_THET8 (db=UNIREF evalue=4.6e-59 bit_score=233.0 identity=69.8 coverage=85.96491228070175)
COMPLEX1_20K (db=PatternScan db_id=PS01150 from=121 to=137 evalue=0.0 interpro_id=IPR006138 interpro_description=NADH-ubiquinone oxidoreductase, 20 Kd subunit GO=Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137), Molecular Function: quinone binding (GO:0048038), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
nuoB_fam: NADH-quinone oxidoreductase, B sub (db=HMMTigr db_id=TIGR01957 from=13 to=156 evalue=8.8e-106 interpro_id=IPR006138 interpro_description=NADH-ubiquinone oxidoreductase, 20 Kd subunit GO=Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137), Molecular Function: quinone binding (GO:0048038), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_33_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12136..12537)
DNA (402bp) protein (134aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U186_9FIRM (db=UNIREF evalue=7.6e-25 bit_score=119.0 identity=48.3 coverage=97.76119402985076)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=65)
AMDSBA3_33_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12625..12825)
DNA (201bp) protein (67aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U185_9FIRM (db=UNIREF evalue=1.4e-11 bit_score=73.9 identity=61.9 coverage=91.04477611940298)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
AMDSBA3_33_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12815..13795)
DNA (981bp) protein (327aa)
cytochrome b/b6 domain protein
Cytochrome b/b6 domain protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0D8_ACIFD (db=UNIREF evalue=2.4e-48 bit_score=198.4 identity=37.5 coverage=93.27217125382263)
seg (db=Seg db_id=seg from=26 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=264 to=286)
AMDSBA3_33_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13792..14421)
DNA (630bp) protein (210aa)
cytochrome b/b6 protein
Cytochrome b/b6 domain n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBM3_CALMQ (db=UNIREF evalue=3.4e-11 bit_score=74.3 identity=26.5 coverage=90.47619047619048)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
seg (db=Seg db_id=seg from=97 to=112)
AMDSBA3_33_18
unknown

Not on your lists

comp(14477..14569)
DNA (93bp) protein (31aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
AMDSBA3_33_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14784..15494
DNA (711bp) protein (237aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXQ9_9FIRM (db=UNIREF evalue=6.8e-53 bit_score=213.0 identity=52.2 coverage=93.67088607594937)
seg (db=Seg db_id=seg from=4 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=187 to=209)
AMDSBA3_33_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15838..16968
DNA (1131bp) protein (377aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=224 evalue=2.6e-50)
(db=HMMPfam db_id=PF01209 from=5 to=218 evalue=2.3e-44 interpro_id=IPR004033 interpro_description=UbiE/COQ5 methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108:SF24 from=6 to=225 evalue=1.1e-43 interpro_id=IPR004033 interpro_description=UbiE/COQ5 methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=6 to=225 evalue=1.1e-43)
AMDSBA3_33_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17273..18301
DNA (1029bp) protein (343aa)
radical SAM protein
Radical SAM domain protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YE35_METS5 (db=UNIREF evalue=7.8e-58 bit_score=229.9 identity=37.8 coverage=96.20991253644316)
Coenzyme PQQ biosynthesis protein E (db=HMMPIR db_id=PIRSF037420 from=1 to=342 evalue=3.4e-76 interpro_id=IPR017200 interpro_description=Radical SAM coenzyme PQQ biosynthesis protein E/heme D1 biosynthesis NirJ)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=8 to=314 evalue=2.5e-53)
AMDSBA3_33_22
unknown

Not on your lists

comp(18699..19004)
DNA (306bp) protein (102aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=16 to=30)
seg (db=Seg db_id=seg from=60 to=77)
AMDSBA3_33_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19030..19440)
DNA (411bp) protein (137aa)
UspA domain-containing protein
UspA domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSU1_9FIRM (db=UNIREF evalue=8.0e-30 bit_score=135.6 identity=52.7 coverage=94.8905109489051)
(db=HMMPfam db_id=PF00582 from=2 to=132 evalue=1.2e-26 interpro_id=IPR006016 interpro_description=UspA GO=Biological Process: response to stress (GO:0006950))
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=4 to=135 evalue=4.7e-26)
AMDSBA3_33_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19454..19960)
DNA (507bp) protein (169aa)
(db=HMMPfam db_id=PF00582 from=5 to=152 evalue=4.2e-21 interpro_id=IPR006016 interpro_description=UspA GO=Biological Process: response to stress (GO:0006950))
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=5 to=160 evalue=8.0e-21)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=5 to=152 evalue=4.2e-18 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
UNVRSLSTRESS (db=FPrintScan db_id=PR01438 from=131 to=153 evalue=6.8e-12 interpro_id=IPR006015 interpro_description=Universal stress protein A)
AMDSBA3_33_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20436..20786
DNA (351bp) protein (117aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUV8_9FIRM (db=UNIREF evalue=1.5e-37 bit_score=161.0 identity=64.3 coverage=94.87179487179486)
seg (db=Seg db_id=seg from=77 to=93)
seg (db=Seg db_id=seg from=28 to=37)
AMDSBA3_33_26
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20891..22420)
DNA (1530bp) protein (510aa)
AMP-dependent synthetase/ligase
Medium-chain-fatty-acid--CoA ligase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVW9_9GAMM (db=UNIREF evalue=1.6e-46 bit_score=193.0 identity=29.0 coverage=91.37254901960785)
AMP_BINDING (db=PatternScan db_id=PS00455 from=164 to=175 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
LONG-CHAIN-FATTY-ACID--COA LIGASE (db=HMMPanther db_id=PTHR11968:SF44 from=29 to=506 evalue=3.2e-160)
AMDSBA3_33_27
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22417..23145)
DNA (729bp) protein (243aa)
hypothetical protein
seg (db=Seg db_id=seg from=44 to=56)
seg (db=Seg db_id=seg from=6 to=22)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=213 evalue=1.8e-31 interpro_id=IPR023214 interpro_description=HAD-like domain)
AMDSBA3_33_28
Geobacillus sp. G1w1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23167..24636)
DNA (1470bp) protein (490aa)
betaine-aldehyde dehydrogenase
Succinate-semialdehyde dehydrogenase (NADP+) n=2 Tax=Amycolatopsis mediterranei RepID=G0FW48_AMYMD (db=UNIREF evalue=3.7e-69 bit_score=268.1 identity=35.7 coverage=91.22448979591836)
seg (db=Seg db_id=seg from=167 to=173)
ALDEHYDE_DEHYDR_GLU (db=PatternScan db_id=PS00687 from=253 to=260 evalue=0.0 interpro_id=IPR016160 interpro_description=Aldehyde dehydrogenase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_33_29
Geobacillus sp. CAMR5420, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24633..25061)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4HZ40_MYCRH (db=UNIREF evalue=7.4e-10 bit_score=69.3 identity=32.3 coverage=88.11188811188812)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDE47253.1}; TaxID=1482739 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. CAMR5420.;"
Uncharacterized protein n=4 Tax=Geobacillus RepID=C9RTF6_GEOSY
AMDSBA3_33_30
Geobacillus caldoxylosilyticus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25087..26196)
DNA (1110bp) protein (370aa)
alcohol dehydrogenase-related protein
Alcohol dehydrogenase GroES domain protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QPM5_9EURY (db=UNIREF evalue=1.2e-32 bit_score=146.4 identity=34.7 coverage=79.72972972972973)
seg (db=Seg db_id=seg from=142 to=154)
seg (db=Seg db_id=seg from=53 to=61)
Displaying items 1-30 of 41 in total

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