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AMDSBA3_36

Alias: AMDSBA3_C35

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_36_1
unknown

Not on your lists

2..346
-----------------
DNA (345bp)
protein (115aa)
seg (db=Seg db_id=seg from=95 to=110)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=1 to=109 evalue=2.2e-14)
AMDSBA3_36_2
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(490..1488)
-----------------
DNA (999bp)
protein (333aa)
seg (db=Seg db_id=seg from=213 to=229)
seg (db=Seg db_id=seg from=244 to=274)
hypothetical protein
Uncharacterized protein n=1 Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WWK2_BACT2
AMDSBA3_36_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1813..3552
-----------------
DNA (1740bp)
protein (580aa)
family 5 extracellular solute-binding protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1D8_9FIRM (db=UNIREF evalue=9.0e-115 bit_score=419.9 identity=40.5 coverage=97.06896551724138)
seg (db=Seg db_id=seg from=24 to=41)
seg (db=Seg db_id=seg from=149 to=159)
AMDSBA3_36_4
Sporosarcina newyorkensis, Sporosarcina, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3706..4266)
-----------------
DNA (561bp)
protein (187aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1V1_9RHOB (db=UNIREF evalue=3.3e-10 bit_score=70.9 identity=31.3 coverage=68.98395721925134)
seg (db=Seg db_id=seg from=2 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=153)
AMDSBA3_36_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4408..6237)
-----------------
DNA (1830bp)
protein (610aa)
glycoside hydrolase 15-like protein
Glycosyl hydrolase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I2U2_9ACTO (db=UNIREF evalue=1.1e-51 bit_score=210.3 identity=32.0 coverage=63.77049180327868)
coiled-coil (db=Coil db_id=coil from=181 to=209 evalue=NA)
Six-hairpin glycosidases (db=superfamily db_id=SSF48208 from=201 to=605 evalue=1.2e-83 interpro_id=IPR008928 interpro_description=Six-hairpin glycosidase-like GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA3_36_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6429..8069
-----------------
DNA (1641bp)
protein (547aa)
Formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Desmospora sp. 8437 RepID=F5SHY5_9BACL (db=UNIREF evalue=5.4e-162 bit_score=576.6 identity=52.9 coverage=98.72029250457038)
seg (db=Seg db_id=seg from=90 to=103)
AMDSBA3_36_7

Not on your lists

comp(8315..8899)
-----------------
DNA (585bp)
protein (195aa)
Flavin reductase
Predicted flavoprotein n=1 Tax=uncultured soil bacterium RepID=E2D2J9_9BACT (db=UNIREF evalue=1.3e-36 bit_score=158.7 identity=53.8 coverage=72.82051282051282)
seg (db=Seg db_id=seg from=110 to=121)
seg (db=Seg db_id=seg from=71 to=81)
AMDSBA3_36_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9501..11240)
-----------------
DNA (1740bp)
protein (580aa)
family 5 extracellular solute-binding protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1D8_9FIRM (db=UNIREF evalue=6.7e-126 bit_score=456.8 identity=42.1 coverage=98.10344827586206)
seg (db=Seg db_id=seg from=4 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA3_36_9
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(11642..12568)
-----------------
DNA (927bp)
protein (309aa)
succinylglutamate desuccinylase / aspartoacylase family protein
Succinylglutamate desuccinylase/aspartoacylase n=2 Tax=Clostridium butyricum RepID=C4IJ02_CLOBU (db=UNIREF evalue=8.9e-45 bit_score=186.4 identity=33.9 coverage=95.46925566343042)
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=23 to=306 evalue=3.5e-47)
(db=HMMPfam db_id=PF04952 from=33 to=307 evalue=8.6e-42 interpro_id=IPR007036 interpro_description=Succinylglutamate desuccinylase/aspartoacylase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
AMDSBA3_36_10
unknown

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12966..13952
-----------------
DNA (987bp)
protein (329aa)
12966..13952 + ( gc_cont=0.528)
AMDSBA3_36_11
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13956..14249
-----------------
DNA (294bp)
protein (98aa)
seg (db=Seg db_id=seg from=88 to=94)
(db=HMMPfam db_id=PF07929 from=24 to=83 evalue=2.2e-08 interpro_id=IPR012912 interpro_description=Plasmid pRiA4b, Orf3)
Plasmid pRiA4b ORF-3-like protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9F5T3_9CYAN
AMDSBA3_36_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14501..15658
-----------------
DNA (1158bp)
protein (386aa)
L-aminopeptidase/D-esterase
Uncharacterized protein n=1 Tax=Caenorhabditis japonica RepID=H2WVT6_CAEJA (db=UNIREF evalue=9.5e-44 bit_score=183.3 identity=37.2 coverage=87.30569948186529)
seg (db=Seg db_id=seg from=330 to=340)
seg (db=Seg db_id=seg from=233 to=250)
AMDSBA3_36_13
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(15749..19408)
-----------------
DNA (3660bp)
protein (1220aa)
Carbohydrate-binding family 9 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CI47_THET1 (db=UNIREF evalue=1.3e-144 bit_score=520.0 identity=33.6 coverage=86.88524590163934)
carbohydrate-binding family 9 rbh
carbohydrate-binding family 9 rbh
AMDSBA3_36_14
unknown

Not on your lists

19485..19610
-----------------
DNA (126bp)
protein (42aa)
19485..19610 + ( gc_cont=0.492)
AMDSBA3_36_15
unknown

Not on your lists

19854..19994
-----------------
DNA (141bp)
protein (47aa)
19854..19994 + ( gc_cont=0.539)
AMDSBA3_36_16
unknown

Not on your lists

20065..21222
-----------------
DNA (1158bp)
protein (386aa)
20065..21222 + ( gc_cont=0.568)
AMDSBA3_36_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21445..22737)
-----------------
DNA (1293bp)
protein (431aa)
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia gladioli BSR3 RepID=F2LK65_BURGS (db=UNIREF evalue=7.0e-64 bit_score=250.4 identity=38.1 coverage=87.47099767981439)
transmembrane_regions (db=TMHMM db_id=tmhmm from=301 to=320)
transmembrane_regions (db=TMHMM db_id=tmhmm from=325 to=347)
AMDSBA3_36_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23451..25196)
-----------------
DNA (1746bp)
protein (582aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1D8_9FIRM (db=UNIREF evalue=2.6e-122 bit_score=444.9 identity=40.5 coverage=98.28178694158075)
seg (db=Seg db_id=seg from=6 to=39)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=27 to=578 evalue=1.3e-71)
AMDSBA3_36_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25557..27182)
-----------------
DNA (1626bp)
protein (542aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
AMP-binding enzyme, putative n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RTR9_9GAMM (db=UNIREF evalue=1.6e-110 bit_score=405.6 identity=41.5 coverage=95.5719557195572)
seg (db=Seg db_id=seg from=338 to=352)
AMDSBA3_36_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27533..28699
-----------------
DNA (1167bp)
protein (389aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16) rbh
acetyl-CoA acetyltransferase (EC:2.3.1.16) rbh
Predicted protein n=3 Tax=cellular organisms RepID=B9NFG7_POPTR (db=UNIREF evalue=1.7e-104 bit_score=385.2 identity=53.0 coverage=99.22879177377892)
THIOLASE_3 (db=PatternScan db_id=PS00099 from=368 to=381 evalue=0.0 interpro_id=IPR020610 interpro_description=Thiolase, active site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
AMDSBA3_36_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28712..29473
-----------------
DNA (762bp)
protein (254aa)
short-chain dehydrogenase/reductase SDR
Uncharacterized protein n=1 Tax=Amphimedon queenslandica RepID=I1FZU2_AMPQE (db=UNIREF evalue=3.5e-71 bit_score=273.9 identity=56.2 coverage=96.45669291338582)
seg (db=Seg db_id=seg from=11 to=23)
ADH_SHORT (db=PatternScan db_id=PS00061 from=146 to=174 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBA3_36_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29483..30640
-----------------
DNA (1158bp)
protein (386aa)
long-chain-acyl-CoA dehydrogenase (EC:1.3.99.13)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MZB5_9ACTO (db=UNIREF evalue=1.7e-29 bit_score=136.0 identity=32.0 coverage=72.279792746114)
ACYL_COA_DH_1 (db=PatternScan db_id=PS00072 from=124 to=136 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
ACYL_COA_DH_2 (db=PatternScan db_id=PS00073 from=338 to=357 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_36_23

Not on your lists

30815..31612
-----------------
DNA (798bp)
protein (266aa)
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC38_THET1 (db=UNIREF evalue=2.1e-42 bit_score=178.3 identity=42.4 coverage=92.10526315789474)
ADH_SHORT (db=PatternScan db_id=PS00061 from=141 to=169 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=248 evalue=4.7e-55)
AMDSBA3_36_24
Fretibacterium fastidiosum, Fretibacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(31609..32388)
-----------------
DNA (780bp)
protein (260aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z1G5_NECH7 (db=UNIREF evalue=1.3e-12 bit_score=79.3 identity=28.7 coverage=92.6923076923077)
seg (db=Seg db_id=seg from=24 to=35)
ADH_SHORT (db=PatternScan db_id=PS00061 from=145 to=173 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBA3_36_25
Aminomonas paucivorans, Aminomonas, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(32405..33145)
-----------------
DNA (741bp)
protein (247aa)
short-chain dehydrogenase/reductase SDR
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSI7_TERTT (db=UNIREF evalue=2.8e-17 bit_score=94.7 identity=28.7 coverage=92.71255060728745)
ADH_SHORT (db=PatternScan db_id=PS00061 from=141 to=169 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=5 to=242 evalue=2.8e-90)
AMDSBA3_36_26

Not on your lists

comp(33145..34485)
-----------------
DNA (1341bp)
protein (447aa)
glutamate-1-semialdehyde 2,1-aminomutase
4-aminobutyrate aminotransferase n=1 Tax=Bordetella avium 197N RepID=Q2KYX7_BORA1 (db=UNIREF evalue=1.3e-25 bit_score=123.2 identity=29.3 coverage=78.07606263982103)
seg (db=Seg db_id=seg from=342 to=353)
seg (db=Seg db_id=seg from=280 to=296)
AMDSBA3_36_27
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34472..35539)
-----------------
DNA (1068bp)
protein (356aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Streptomyces griseoaurantiacus M045 RepID=F3NRW9_9ACTO (db=UNIREF evalue=7.7e-24 bit_score=117.1 identity=29.8 coverage=89.04494382022472)
seg (db=Seg db_id=seg from=254 to=267)
AMDSBA3_36_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35641..36129)
-----------------
DNA (489bp)
protein (163aa)
thioesterase superfamily protein
Thioesterase superfamily protein n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SGX3_THEM7 (db=UNIREF evalue=2.8e-53 bit_score=213.8 identity=66.9 coverage=88.34355828220859)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=16 to=154 evalue=2.8e-22)
(db=HMMPfam db_id=PF03061 from=58 to=142 evalue=2.5e-08 interpro_id=IPR006683 interpro_description=Thioesterase superfamily)
Displaying 28 items

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