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AMDSBA3_40

Alias: AMDSBA3_C39

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_40_1
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(90..254)
-----------------
DNA (165bp)
protein (55aa)
(db=HMMPfam db_id=PF00239 from=5 to=52 evalue=2.5e-07 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
Resolvase domain protein {ECO:0000313|EMBL:ACX52546.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Am
AMDSBA3_40_2
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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889..1290
-----------------
DNA (402bp)
protein (134aa)
DNA polymerase subunit beta
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=4 to=92 evalue=5.7e-13)
(db=HMMPfam db_id=PF01909 from=19 to=72 evalue=0.00018 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
Uncharacterized protein {ECO:0000313|EMBL:CDS52639.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_
AMDSBA3_40_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1280..1693
-----------------
DNA (414bp)
protein (138aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Pseudomonas syringae group RepID=F3E3W9_9PSED (db=UNIREF evalue=1.4e-42 bit_score=177.9 identity=61.5 coverage=97.10144927536231)
(db=HMMPfam db_id=PF01934 from=18 to=132 evalue=7.1e-24 interpro_id=IPR008201 interpro_description=Protein of unknown function DUF86)
Uncharacterized protein {ECO:0000313|EMBL:ABM35459.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthale
AMDSBA3_40_4
Paenibacillus sp. Y412MC10, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1728..3764)
-----------------
DNA (2037bp)
protein (679aa)
Transcriptional regulator, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRD5_PAESJ (db=UNIREF evalue=7.5e-28 bit_score=131.3 identity=24.2 coverage=66.12665684830633)
seg (db=Seg db_id=seg from=98 to=110)
seg (db=Seg db_id=seg from=495 to=506)
seg (db=Seg db_id=seg from=436 to=457)
AMDSBA3_40_5
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4106..4810)
-----------------
DNA (705bp)
protein (235aa)
phosphopantetheinyl transferase
L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase n=1 Tax=Acromyrmex echinatior RepID=F4WDH0_ACREC (db=UNIREF evalue=6.6e-08 bit_score=63.5 identity=25.4 coverage=73.19148936170212)
PHOSPHOPANTETHEINE TRANSFERASE (db=HMMPanther db_id=PTHR12215 from=51 to=212 evalue=1.1e-39)
4'-phosphopantetheinyl transferase (db=superfamily db_id=SSF56214 from=10 to=116 evalue=1.5e-25 interpro_id=IPR008278 interpro_description=4'-phosphopantetheinyl transferase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: holo-[acyl-carrier-protein] synthase activity (GO:0008897), Biological Process: macromolecule biosynthetic process (GO:0009059))
AMDSBA3_40_6
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4798..5391)
-----------------
DNA (594bp)
protein (198aa)
phosphatidylserine synthase
seg (db=Seg db_id=seg from=183 to=195)
seg (db=Seg db_id=seg from=157 to=166)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA3_40_7
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5409..6254)
-----------------
DNA (846bp)
protein (282aa)
CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
Phosphatidate cytidylyltransferase n=1 Tax=Niastella koreensis GR20-10 RepID=G8TJB3_NIAKG (db=UNIREF evalue=2.9e-18 bit_score=98.2 identity=28.4 coverage=87.58865248226951)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=34 to=48)
AMDSBA3_40_8
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6232..7092)
-----------------
DNA (861bp)
protein (287aa)
phosphatidylserine decarboxylase proenzyme (EC:4.1.1.65)
Putative uncharacterized protein n=1 Tax=Polysphondylium pallidum RepID=D3BT90_POLPA (db=UNIREF evalue=1.5e-30 bit_score=139.0 identity=32.8 coverage=95.47038327526133)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
PHOSPHATIDYLSERINE DECARBOXYLASE (db=HMMPanther db_id=PTHR10067 from=16 to=279 evalue=9.9e-56 interpro_id=IPR005221 interpro_description=Phosphatidylserine decarboxylase GO=Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609), Biological Process: phospholipid biosynthetic process (GO:0008654))
AMDSBA3_40_9
unknown

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comp(7112..8308)
-----------------
DNA (1197bp)
protein (399aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=333 to=355)
transmembrane_regions (db=TMHMM db_id=tmhmm from=365 to=387)
seg (db=Seg db_id=seg from=75 to=84)
seg (db=Seg db_id=seg from=161 to=174)
AMDSBA3_40_10
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8305..9900)
-----------------
DNA (1596bp)
protein (532aa)
dioxygenase
dioxygenase
2-nitropropane dioxygenase, NPD n=1 Tax=Frankia sp. EUN1f RepID=D3DCZ4_9ACTO (db=UNIREF evalue=1.9e-47 bit_score=196.1 identity=37.7 coverage=53.19548872180451)
seg (db=Seg db_id=seg from=29 to=39)
AMDSBA3_40_11
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9897..16943)
-----------------
DNA (7047bp)
protein (2349aa)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabA/FabZ n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0IE72_9BACL (db=UNIREF evalue=0.0 bit_score=1032.3 identity=39.2 coverage=63.090676883780326)
putative beta-ketoacyl synthase
seg (db=Seg db_id=seg from=1788 to=1813)
seg (db=Seg db_id=seg from=1593 to=1606)
AMDSBA3_40_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16940..23089)
-----------------
DNA (6150bp)
protein (2050aa)
putative 3-oxoacyl-[acyl-carrier-protein] reductase
putative 3-oxoacyl-[acyl-carrier-protein] reductase
MmpF n=1 Tax=Pseudomonas fluorescens RepID=Q8RL51_PSEFL (db=UNIREF evalue=2.7e-44 bit_score=187.6 identity=32.3 coverage=18.975609756097562)
seg (db=Seg db_id=seg from=1948 to=1964)
AMDSBA3_40_13
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

23318..24673
-----------------
DNA (1356bp)
protein (452aa)
seg (db=Seg db_id=seg from=3 to=19)
Dehydroquinate synthase-like (db=superfamily db_id=SSF56796 from=17 to=316 evalue=3.5e-32)
(db=HMMPfam db_id=PF01761 from=33 to=316 evalue=1.2e-21)
no description (db=Gene3D db_id=G3DSA:3.40.50.1970 from=8 to=184 evalue=3.0e-12)
AMDSBA3_40_14
unknown

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comp(24975..25958)
-----------------
DNA (984bp)
protein (328aa)
seg (db=Seg db_id=seg from=17 to=41)
seg (db=Seg db_id=seg from=233 to=251)
seg (db=Seg db_id=seg from=254 to=265)
AMDSBA3_40_15
unknown

Not on your lists

comp(26039..26152)
-----------------
DNA (114bp)
protein (38aa)
26039..26152 - ( gc_cont=0.605)
AMDSBA3_40_16
Thermoplasmatales archaeon I-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(26184..27005)
-----------------
DNA (822bp)
protein (274aa)
Putative acetyltransferase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9T0_9GAMM (db=UNIREF evalue=9.8e-11 bit_score=73.2 identity=26.1 coverage=84.67153284671532)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=47 to=264 evalue=1.2e-20 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
seg (db=Seg db_id=seg from=124 to=135)
(db=HMMPfam db_id=PF00583 from=181 to=254 evalue=8.3e-12 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
AMDSBA3_40_17
unknown

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comp(27146..27451)
-----------------
DNA (306bp)
protein (102aa)
seg (db=Seg db_id=seg from=59 to=69)
seg (db=Seg db_id=seg from=10 to=22)
(db=HMMPfam db_id=PF07978 from=32 to=84 evalue=2.6e-08 interpro_id=IPR012577 interpro_description=NIPSNAP)
Dimeric alpha+beta barrel (db=superfamily db_id=SSF54909 from=1 to=100 evalue=2.8e-06 interpro_id=IPR011008 interpro_description=Dimeric alpha-beta barrel)
AMDSBA3_40_18
unknown

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comp(27481..27591)
-----------------
DNA (111bp)
protein (37aa)
27481..27591 - ( gc_cont=0.694)
AMDSBA3_40_19
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(27682..28875)
-----------------
DNA (1194bp)
protein (398aa)
CYTOCHROME_P450 (db=PatternScan db_id=PS00086 from=341 to=350 evalue=0.0 interpro_id=IPR017972 interpro_description=Cytochrome P450, conserved site GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.10.630.10 from=14 to=396 evalue=5.8e-103 interpro_id=IPR001128 interpro_description=Cytochrome P450 GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Molecular Function: heme binding (GO:0020037), Biological Process: oxidation-reduction process (GO:0055114))
Cytochrome P450 (db=superfamily db_id=SSF48264 from=12 to=397 evalue=6.1e-89 interpro_id=IPR001128 interpro_description=Cytochrome P450 GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Molecular Function: heme binding (GO:0020037), Biological Process: oxidation-reduction process (GO:0055114))
BP450 (db=FPrintScan db_id=PR00359 from=193 to=215 evalue=9.1e-50 interpro_id=IPR002397 interpro_description=Cytochrome P450, B-class GO=Molecular Function: monooxygenase activity (GO:0004497), Molecular Function: iron ion binding (GO:0005506), Molecular Function: heme binding (GO:0020037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_40_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29936..30391
-----------------
DNA (456bp)
protein (152aa)
UspA domain-containing protein
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=3 to=151 evalue=1.5e-26)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=6 to=150 evalue=2.5e-24 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
(db=HMMPfam db_id=PF00582 from=5 to=150 evalue=6.3e-23 interpro_id=IPR006016 interpro_description=UspA GO=Biological Process: response to stress (GO:0006950))
AMDSBA3_40_21
unknown

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30545..31069
-----------------
DNA (525bp)
protein (175aa)
(db=HMMPfam db_id=PF04961 from=8 to=162 evalue=7.5e-12 interpro_id=IPR007044 interpro_description=Cyclodeaminase/cyclohydrolase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: cellular metabolic process (GO:0044237))
Methenyltetrahydrofolate cyclohydrolase-like (db=superfamily db_id=SSF101262 from=3 to=161 evalue=2.6e-11 interpro_id=IPR007044 interpro_description=Cyclodeaminase/cyclohydrolase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: cellular metabolic process (GO:0044237))
Displaying 21 items

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