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AMDSBA3_41

Alias: AMDSBA3_C40

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_41_1
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(154..513)
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=84 to=95)
Homeodomain-like (db=superfamily db_id=SSF46689 from=9 to=97 evalue=8.2e-12 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP73486.1}; TaxID=581103 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y4.1MC1).;"
AMDSBA3_41_2
unknown

Not on your lists

877..1767
DNA (891bp) protein (297aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=142 to=164)
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=191)
AMDSBA3_41_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1881..3107
DNA (1227bp) protein (409aa)
monooxygenase (EC:1.14.14.1)
Cytochrome P450 4Z1 n=10 Tax=Hominoidea RepID=CP4Z1_HUMAN (db=UNIREF evalue=1.2e-20 bit_score=106.7 identity=23.8 coverage=87.53056234718827)
CYTOCHROME_P450 (db=PatternScan db_id=PS00086 from=350 to=359 evalue=0.0 interpro_id=IPR017972 interpro_description=Cytochrome P450, conserved site GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
Cytochrome P450 (db=superfamily db_id=SSF48264 from=9 to=407 evalue=1.3e-75 interpro_id=IPR001128 interpro_description=Cytochrome P450 GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Molecular Function: heme binding (GO:0020037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_41_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3104..3976)
DNA (873bp) protein (291aa)
peptidase M55 D-aminopeptidase
D-aminopeptidase n=1 Tax=Thermococcus sp. AM4 RepID=B7R062_9EURY (db=UNIREF evalue=5.8e-38 bit_score=163.7 identity=37.4 coverage=89.3470790378007)
(db=HMMPfam db_id=PF04951 from=16 to=279 evalue=1.0e-82 interpro_id=IPR007035 interpro_description=Peptidase M55, D-aminopeptidase)
Dipeptide transport protein (db=superfamily db_id=SSF63992 from=16 to=285 evalue=1.3e-74 interpro_id=IPR007035 interpro_description=Peptidase M55, D-aminopeptidase)
AMDSBA3_41_5
unknown

Not on your lists

comp(4019..4318)
DNA (300bp) protein (100aa)
4019..4318 - ( gc_cont=0.583)
AMDSBA3_41_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4345..4779)
DNA (435bp) protein (145aa)
ferric uptake regulator family protein
Transcription regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YPW8_LYNSP (db=UNIREF evalue=3.4e-10 bit_score=70.5 identity=30.8 coverage=88.96551724137932)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=136 evalue=5.7e-29)
(db=HMMPfam db_id=PF01475 from=14 to=109 evalue=1.7e-18 interpro_id=IPR002481 interpro_description=Ferric-uptake regulator GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA3_41_7
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4903..5388)
DNA (486bp) protein (162aa)
ferritin Dps family protein
Ferritin Dps family protein n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WQK3_BACT2 (db=UNIREF evalue=6.3e-42 bit_score=176.0 identity=56.2 coverage=97.53086419753086)
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=1 to=159 evalue=2.3e-33 interpro_id=IPR012347 interpro_description=Ferritin-related)
Ferritin-like (db=superfamily db_id=SSF47240 from=4 to=160 evalue=4.2e-33 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_41_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5465..6424)
DNA (960bp) protein (320aa)
selD; selenophosphate synthetase
selD; selenophosphate synthetase
Selenide, water dikinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TX12_9FIRM (db=UNIREF evalue=2.7e-100 bit_score=370.9 identity=56.9 coverage=99.375)
seg (db=Seg db_id=seg from=166 to=185)
AMDSBA3_41_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6525..7586)
DNA (1062bp) protein (354aa)
permease rbh
Membrane protein, putative n=2 Tax=Clostridium RepID=C6PWT9_9CLOT (db=UNIREF evalue=2.3e-81 bit_score=308.1 identity=42.5 coverage=97.17514124293785)
transmembrane_regions (db=TMHMM db_id=tmhmm from=234 to=256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=263 to=285)
AMDSBA3_41_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7773..8699
DNA (927bp) protein (309aa)
LysR family transcriptional regulator
Transcriptional regulator, LysR family protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FQ23_9RHOB (db=UNIREF evalue=1.3e-11 bit_score=76.3 identity=26.2 coverage=88.3495145631068)
seg (db=Seg db_id=seg from=251 to=263)
(db=HMMPfam db_id=PF03466 from=97 to=290 evalue=6.9e-36 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
AMDSBA3_41_11
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8719..10188
DNA (1470bp) protein (490aa)
amidase rbh
amidase rbh
Putative uncharacterized protein n=1 Tax=Leptosphaeria maculans JN3 RepID=E5R588_LEPMJ (db=UNIREF evalue=8.7e-18 bit_score=97.4 identity=46.7 coverage=21.428571428571427)
Amidase signature (AS) enzymes (db=superfamily db_id=SSF75304 from=7 to=488 evalue=6.8e-108 interpro_id=IPR023631 interpro_description=Amidase signature domain)
AMDSBA3_41_12
unknown

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comp(10261..10425)
DNA (165bp) protein (55aa)
10261..10425 - ( gc_cont=0.600)
AMDSBA3_41_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10490..11704)
DNA (1215bp) protein (405aa)
Capsular polysaccharide biosynthesis protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I2M1_SULAT (db=UNIREF evalue=4.9e-59 bit_score=234.2 identity=35.9 coverage=96.79012345679013)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=322 to=341)
transmembrane_regions (db=TMHMM db_id=tmhmm from=346 to=368)
AMDSBA3_41_14
unknown

Not on your lists

11886..13706
DNA (1821bp) protein (607aa)
seg (db=Seg db_id=seg from=10 to=21)
seg (db=Seg db_id=seg from=210 to=222)
seg (db=Seg db_id=seg from=576 to=588)
AMDSBA3_41_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13843..15075)
DNA (1233bp) protein (411aa)
LmbE family protein rbh
LmbE family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX05_9FIRM (db=UNIREF evalue=9.6e-95 bit_score=352.8 identity=46.6 coverage=94.40389294403893)
LmbE-like (db=superfamily db_id=SSF102588 from=1 to=271 evalue=6.0e-43 interpro_id=IPR024078 interpro_description=Putative deacetylase LmbE-like domain)
AMDSBA3_41_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15078..15449)
DNA (372bp) protein (124aa)
glutaconyl-CoA decarboxylase subunit gamma (biotin carrier)
Glutaconyl-CoA decarboxylase subunit C1 n=4 Tax=Clostridium RepID=B7TVP4_CLOSY (db=UNIREF evalue=7.3e-14 bit_score=82.4 identity=37.2 coverage=94.35483870967742)
BIOTIN (db=PatternScan db_id=PS00188 from=79 to=96 evalue=0.0 interpro_id=IPR001882 interpro_description=Biotin-binding site)
Single hybrid motif (db=superfamily db_id=SSF51230 from=40 to=123 evalue=5.1e-22 interpro_id=IPR011053 interpro_description=Single hybrid motif)
AMDSBA3_41_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15648..17195)
DNA (1548bp) protein (516aa)
mmdA; carboxyl transferase rbh
mmdA; carboxyl transferase rbh
Propionyl-CoA carboxylase n=2 Tax=Sulfobacillus acidophilus RepID=G8TX02_9FIRM (db=UNIREF evalue=1.5e-230 bit_score=804.3 identity=78.4 coverage=99.2248062015504)
AMDSBA3_41_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17182..17595)
DNA (414bp) protein (138aa)
methylmalonyl-CoA epimerase
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QPK0_9EURY (db=UNIREF evalue=6.9e-13 bit_score=79.3 identity=36.9 coverage=89.85507246376811)
metmalonyl_epim: methylmalonyl-CoA ep (db=HMMTigr db_id=TIGR03081 from=2 to=128 evalue=9.1e-56 interpro_id=IPR017515 interpro_description=Methylmalonyl-CoA epimerase)
GLYOXALASE FAMILY PROTEIN (db=HMMPanther db_id=PTHR21366 from=1 to=134 evalue=6.2e-42)
AMDSBA3_41_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17622..19295)
DNA (1674bp) protein (558aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2) rbh
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2) rbh
Probable methylmalonyl-CoA mutase, mitochondrial n=5 Tax=Caenorhabditis RepID=MUTA_CAEEL (db=UNIREF evalue=3.9e-131 bit_score=474.2 identity=45.8 coverage=96.23655913978494)
AMDSBA3_41_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19309..20562)
DNA (1254bp) protein (418aa)
glutamate dehydrogenase rbh
glutamate dehydrogenase rbh
Glutamate dehydrogenase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6P8G3_9ARCH (db=UNIREF evalue=2.7e-105 bit_score=387.9 identity=48.6 coverage=95.21531100478468)
AMDSBA3_41_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20658..20939)
DNA (282bp) protein (94aa)
protein translocase subunit yajC
Protein translocase subunit yajC n=2 Tax=Sulfobacillus acidophilus RepID=G8TWZ8_9FIRM (db=UNIREF evalue=1.4e-28 bit_score=131.0 identity=63.3 coverage=94.68085106382979)
seg (db=Seg db_id=seg from=27 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
AMDSBA3_41_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21105..22130)
DNA (1026bp) protein (342aa)
Holliday junction DNA helicase subunit RuvB rbh
Holliday junction DNA helicase subunit RuvB rbh
Holliday junction ATP-dependent DNA helicase RuvB n=2 Tax=Sulfobacillus acidophilus RepID=F8IAZ4_SULAT (db=UNIREF evalue=3.8e-137 bit_score=493.4 identity=77.7 coverage=94.15204678362574)
AMDSBA3_41_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22130..22741)
DNA (612bp) protein (204aa)
Holliday junction DNA helicase subunit RuvA
Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Acaryochloris RepID=RUVA_ACAM1 (db=UNIREF evalue=1.3e-20 bit_score=105.5 identity=34.5 coverage=89.70588235294117)
ruvA: Holliday junction DNA helicase RuvA (db=HMMTigr db_id=TIGR00084 from=1 to=198 evalue=1.8e-35 interpro_id=IPR000085 interpro_description=Bacterial DNA recombination protein RuvA GO=Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
RuvA domain 2-like (db=superfamily db_id=SSF47781 from=65 to=137 evalue=4.6e-19 interpro_id=IPR010994 interpro_description=RuvA domain 2-like)
AMDSBA3_41_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22766..23260)
DNA (495bp) protein (165aa)
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HT74_9FIRM (db=UNIREF evalue=2.8e-37 bit_score=160.6 identity=53.0 coverage=90.9090909090909)
seg (db=Seg db_id=seg from=139 to=149)
RUVC (db=PatternScan db_id=PS01321 from=113 to=148 evalue=0.0 interpro_id=IPR020563 interpro_description=Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO=Molecular Function: crossover junction endodeoxyribonuclease activity (GO:0008821))
AMDSBA3_41_25
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23656..24801
DNA (1146bp) protein (382aa)
oatA_2; O-acetyltransferase OatA (EC:2.3.1.-)
oatA_2; O-acetyltransferase OatA (EC:2.3.1.-)
Acyltransferase n=1 Tax=Listeria grayi DSM 20601 RepID=D7UYK1_LISGR (db=UNIREF evalue=9.9e-86 bit_score=322.8 identity=47.7 coverage=89.26701570680629)
transmembrane_regions (db=TMHMM db_id=tmhmm from=236 to=254)
AMDSBA3_41_26
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24794..25630
DNA (837bp) protein (279aa)
acyltransferase 3
Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FBZ5_9ACTN (db=UNIREF evalue=1.2e-19 bit_score=102.8 identity=32.5 coverage=69.17562724014337)
seg (db=Seg db_id=seg from=52 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_41_27
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26023..27519)
DNA (1497bp) protein (499aa)
putative amino acid transporter
Amino acid transporter n=1 Tax=Methanopyrus kandleri AV19 RepID=Q8TV25_METKA (db=UNIREF evalue=2.6e-25 bit_score=122.5 identity=26.4 coverage=79.35871743486975)
transmembrane_regions (db=TMHMM db_id=tmhmm from=386 to=408)
transmembrane_regions (db=TMHMM db_id=tmhmm from=428 to=450)
AMDSBA3_41_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27970..28866)
DNA (897bp) protein (299aa)
CbbX protein
CbbX protein
AAA ATPase, central region n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IGS3_9CHLR (db=UNIREF evalue=4.7e-99 bit_score=366.7 identity=61.6 coverage=98.66220735785953)
AMDSBA3_41_29
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28884..29306)
DNA (423bp) protein (141aa)
no description (db=Gene3D db_id=G3DSA:3.30.190.10 from=3 to=140 evalue=7.2e-43 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
RuBisCO, small subunit (db=superfamily db_id=SSF55239 from=3 to=140 evalue=5.8e-41 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
(db=HMMPfam db_id=PF00101 from=7 to=105 evalue=6.6e-33 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
AMDSBA3_41_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29346..30788)
DNA (1443bp) protein (481aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisophosphate carboxylase n=3 Tax=Oscillochloris trichoides RepID=E1IGS1_9CHLR (db=UNIREF evalue=3.5e-221 bit_score=773.1 identity=80.2 coverage=95.21829521829522)
Displaying items 1-30 of 31 in total

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