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AMDSBA3_41

Alias: AMDSBA3_C40

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_41_1
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(154..513)
-----------------
DNA (360bp)
protein (120aa)
seg (db=Seg db_id=seg from=84 to=95)
Homeodomain-like (db=superfamily db_id=SSF46689 from=9 to=97 evalue=8.2e-12 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP73486.1}; TaxID=581103 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y4.1MC1).;"
AMDSBA3_41_2
unknown

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877..1767
-----------------
DNA (891bp)
protein (297aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=142 to=164)
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=191)
AMDSBA3_41_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1881..3107
-----------------
DNA (1227bp)
protein (409aa)
monooxygenase (EC:1.14.14.1)
Cytochrome P450 4Z1 n=10 Tax=Hominoidea RepID=CP4Z1_HUMAN (db=UNIREF evalue=1.2e-20 bit_score=106.7 identity=23.8 coverage=87.53056234718827)
CYTOCHROME_P450 (db=PatternScan db_id=PS00086 from=350 to=359 evalue=0.0 interpro_id=IPR017972 interpro_description=Cytochrome P450, conserved site GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
Cytochrome P450 (db=superfamily db_id=SSF48264 from=9 to=407 evalue=1.3e-75 interpro_id=IPR001128 interpro_description=Cytochrome P450 GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Molecular Function: heme binding (GO:0020037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_41_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3104..3976)
-----------------
DNA (873bp)
protein (291aa)
peptidase M55 D-aminopeptidase
D-aminopeptidase n=1 Tax=Thermococcus sp. AM4 RepID=B7R062_9EURY (db=UNIREF evalue=5.8e-38 bit_score=163.7 identity=37.4 coverage=89.3470790378007)
(db=HMMPfam db_id=PF04951 from=16 to=279 evalue=1.0e-82 interpro_id=IPR007035 interpro_description=Peptidase M55, D-aminopeptidase)
Dipeptide transport protein (db=superfamily db_id=SSF63992 from=16 to=285 evalue=1.3e-74 interpro_id=IPR007035 interpro_description=Peptidase M55, D-aminopeptidase)
AMDSBA3_41_5
unknown

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comp(4019..4318)
-----------------
DNA (300bp)
protein (100aa)
4019..4318 - ( gc_cont=0.583)
AMDSBA3_41_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4345..4779)
-----------------
DNA (435bp)
protein (145aa)
ferric uptake regulator family protein
Transcription regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YPW8_LYNSP (db=UNIREF evalue=3.4e-10 bit_score=70.5 identity=30.8 coverage=88.96551724137932)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=136 evalue=5.7e-29)
(db=HMMPfam db_id=PF01475 from=14 to=109 evalue=1.7e-18 interpro_id=IPR002481 interpro_description=Ferric-uptake regulator GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA3_41_7
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4903..5388)
-----------------
DNA (486bp)
protein (162aa)
ferritin Dps family protein
Ferritin Dps family protein n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WQK3_BACT2 (db=UNIREF evalue=6.3e-42 bit_score=176.0 identity=56.2 coverage=97.53086419753086)
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=1 to=159 evalue=2.3e-33 interpro_id=IPR012347 interpro_description=Ferritin-related)
Ferritin-like (db=superfamily db_id=SSF47240 from=4 to=160 evalue=4.2e-33 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_41_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5465..6424)
-----------------
DNA (960bp)
protein (320aa)
selD; selenophosphate synthetase
selD; selenophosphate synthetase
Selenide, water dikinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TX12_9FIRM (db=UNIREF evalue=2.7e-100 bit_score=370.9 identity=56.9 coverage=99.375)
seg (db=Seg db_id=seg from=166 to=185)
AMDSBA3_41_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6525..7586)
-----------------
DNA (1062bp)
protein (354aa)
permease rbh
Membrane protein, putative n=2 Tax=Clostridium RepID=C6PWT9_9CLOT (db=UNIREF evalue=2.3e-81 bit_score=308.1 identity=42.5 coverage=97.17514124293785)
transmembrane_regions (db=TMHMM db_id=tmhmm from=234 to=256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=263 to=285)
AMDSBA3_41_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7773..8699
-----------------
DNA (927bp)
protein (309aa)
LysR family transcriptional regulator
Transcriptional regulator, LysR family protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FQ23_9RHOB (db=UNIREF evalue=1.3e-11 bit_score=76.3 identity=26.2 coverage=88.3495145631068)
seg (db=Seg db_id=seg from=251 to=263)
(db=HMMPfam db_id=PF03466 from=97 to=290 evalue=6.9e-36 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
AMDSBA3_41_11
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8719..10188
-----------------
DNA (1470bp)
protein (490aa)
amidase rbh
amidase rbh
Putative uncharacterized protein n=1 Tax=Leptosphaeria maculans JN3 RepID=E5R588_LEPMJ (db=UNIREF evalue=8.7e-18 bit_score=97.4 identity=46.7 coverage=21.428571428571427)
Amidase signature (AS) enzymes (db=superfamily db_id=SSF75304 from=7 to=488 evalue=6.8e-108 interpro_id=IPR023631 interpro_description=Amidase signature domain)
AMDSBA3_41_12
unknown

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comp(10261..10425)
-----------------
DNA (165bp)
protein (55aa)
10261..10425 - ( gc_cont=0.600)
AMDSBA3_41_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10490..11704)
-----------------
DNA (1215bp)
protein (405aa)
Capsular polysaccharide biosynthesis protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I2M1_SULAT (db=UNIREF evalue=4.9e-59 bit_score=234.2 identity=35.9 coverage=96.79012345679013)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=322 to=341)
transmembrane_regions (db=TMHMM db_id=tmhmm from=346 to=368)
AMDSBA3_41_14
unknown

Not on your lists

11886..13706
-----------------
DNA (1821bp)
protein (607aa)
seg (db=Seg db_id=seg from=10 to=21)
seg (db=Seg db_id=seg from=210 to=222)
seg (db=Seg db_id=seg from=576 to=588)
AMDSBA3_41_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13843..15075)
-----------------
DNA (1233bp)
protein (411aa)
LmbE family protein rbh
LmbE family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX05_9FIRM (db=UNIREF evalue=9.6e-95 bit_score=352.8 identity=46.6 coverage=94.40389294403893)
LmbE-like (db=superfamily db_id=SSF102588 from=1 to=271 evalue=6.0e-43 interpro_id=IPR024078 interpro_description=Putative deacetylase LmbE-like domain)
AMDSBA3_41_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15078..15449)
-----------------
DNA (372bp)
protein (124aa)
glutaconyl-CoA decarboxylase subunit gamma (biotin carrier)
Glutaconyl-CoA decarboxylase subunit C1 n=4 Tax=Clostridium RepID=B7TVP4_CLOSY (db=UNIREF evalue=7.3e-14 bit_score=82.4 identity=37.2 coverage=94.35483870967742)
BIOTIN (db=PatternScan db_id=PS00188 from=79 to=96 evalue=0.0 interpro_id=IPR001882 interpro_description=Biotin-binding site)
Single hybrid motif (db=superfamily db_id=SSF51230 from=40 to=123 evalue=5.1e-22 interpro_id=IPR011053 interpro_description=Single hybrid motif)
AMDSBA3_41_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15648..17195)
-----------------
DNA (1548bp)
protein (516aa)
mmdA; carboxyl transferase rbh
mmdA; carboxyl transferase rbh
Propionyl-CoA carboxylase n=2 Tax=Sulfobacillus acidophilus RepID=G8TX02_9FIRM (db=UNIREF evalue=1.5e-230 bit_score=804.3 identity=78.4 coverage=99.2248062015504)
AMDSBA3_41_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17182..17595)
-----------------
DNA (414bp)
protein (138aa)
methylmalonyl-CoA epimerase
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QPK0_9EURY (db=UNIREF evalue=6.9e-13 bit_score=79.3 identity=36.9 coverage=89.85507246376811)
metmalonyl_epim: methylmalonyl-CoA ep (db=HMMTigr db_id=TIGR03081 from=2 to=128 evalue=9.1e-56 interpro_id=IPR017515 interpro_description=Methylmalonyl-CoA epimerase)
GLYOXALASE FAMILY PROTEIN (db=HMMPanther db_id=PTHR21366 from=1 to=134 evalue=6.2e-42)
AMDSBA3_41_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17622..19295)
-----------------
DNA (1674bp)
protein (558aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2) rbh
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2) rbh
Probable methylmalonyl-CoA mutase, mitochondrial n=5 Tax=Caenorhabditis RepID=MUTA_CAEEL (db=UNIREF evalue=3.9e-131 bit_score=474.2 identity=45.8 coverage=96.23655913978494)
AMDSBA3_41_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19309..20562)
-----------------
DNA (1254bp)
protein (418aa)
glutamate dehydrogenase rbh
glutamate dehydrogenase rbh
Glutamate dehydrogenase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6P8G3_9ARCH (db=UNIREF evalue=2.7e-105 bit_score=387.9 identity=48.6 coverage=95.21531100478468)
AMDSBA3_41_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20658..20939)
-----------------
DNA (282bp)
protein (94aa)
protein translocase subunit yajC
Protein translocase subunit yajC n=2 Tax=Sulfobacillus acidophilus RepID=G8TWZ8_9FIRM (db=UNIREF evalue=1.4e-28 bit_score=131.0 identity=63.3 coverage=94.68085106382979)
seg (db=Seg db_id=seg from=27 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
AMDSBA3_41_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21105..22130)
-----------------
DNA (1026bp)
protein (342aa)
Holliday junction DNA helicase subunit RuvB rbh
Holliday junction DNA helicase subunit RuvB rbh
Holliday junction ATP-dependent DNA helicase RuvB n=2 Tax=Sulfobacillus acidophilus RepID=F8IAZ4_SULAT (db=UNIREF evalue=3.8e-137 bit_score=493.4 identity=77.7 coverage=94.15204678362574)
AMDSBA3_41_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22130..22741)
-----------------
DNA (612bp)
protein (204aa)
Holliday junction DNA helicase subunit RuvA
Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Acaryochloris RepID=RUVA_ACAM1 (db=UNIREF evalue=1.3e-20 bit_score=105.5 identity=34.5 coverage=89.70588235294117)
ruvA: Holliday junction DNA helicase RuvA (db=HMMTigr db_id=TIGR00084 from=1 to=198 evalue=1.8e-35 interpro_id=IPR000085 interpro_description=Bacterial DNA recombination protein RuvA GO=Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
RuvA domain 2-like (db=superfamily db_id=SSF47781 from=65 to=137 evalue=4.6e-19 interpro_id=IPR010994 interpro_description=RuvA domain 2-like)
AMDSBA3_41_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22766..23260)
-----------------
DNA (495bp)
protein (165aa)
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HT74_9FIRM (db=UNIREF evalue=2.8e-37 bit_score=160.6 identity=53.0 coverage=90.9090909090909)
seg (db=Seg db_id=seg from=139 to=149)
RUVC (db=PatternScan db_id=PS01321 from=113 to=148 evalue=0.0 interpro_id=IPR020563 interpro_description=Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO=Molecular Function: crossover junction endodeoxyribonuclease activity (GO:0008821))
AMDSBA3_41_25
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23656..24801
-----------------
DNA (1146bp)
protein (382aa)
oatA_2; O-acetyltransferase OatA (EC:2.3.1.-)
oatA_2; O-acetyltransferase OatA (EC:2.3.1.-)
Acyltransferase n=1 Tax=Listeria grayi DSM 20601 RepID=D7UYK1_LISGR (db=UNIREF evalue=9.9e-86 bit_score=322.8 identity=47.7 coverage=89.26701570680629)
transmembrane_regions (db=TMHMM db_id=tmhmm from=236 to=254)
AMDSBA3_41_26
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24794..25630
-----------------
DNA (837bp)
protein (279aa)
acyltransferase 3
Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FBZ5_9ACTN (db=UNIREF evalue=1.2e-19 bit_score=102.8 identity=32.5 coverage=69.17562724014337)
seg (db=Seg db_id=seg from=52 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_41_27
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26023..27519)
-----------------
DNA (1497bp)
protein (499aa)
putative amino acid transporter
Amino acid transporter n=1 Tax=Methanopyrus kandleri AV19 RepID=Q8TV25_METKA (db=UNIREF evalue=2.6e-25 bit_score=122.5 identity=26.4 coverage=79.35871743486975)
transmembrane_regions (db=TMHMM db_id=tmhmm from=386 to=408)
transmembrane_regions (db=TMHMM db_id=tmhmm from=428 to=450)
AMDSBA3_41_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27970..28866)
-----------------
DNA (897bp)
protein (299aa)
CbbX protein
CbbX protein
AAA ATPase, central region n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IGS3_9CHLR (db=UNIREF evalue=4.7e-99 bit_score=366.7 identity=61.6 coverage=98.66220735785953)
AMDSBA3_41_29
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28884..29306)
-----------------
DNA (423bp)
protein (141aa)
no description (db=Gene3D db_id=G3DSA:3.30.190.10 from=3 to=140 evalue=7.2e-43 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
RuBisCO, small subunit (db=superfamily db_id=SSF55239 from=3 to=140 evalue=5.8e-41 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
(db=HMMPfam db_id=PF00101 from=7 to=105 evalue=6.6e-33 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
AMDSBA3_41_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29346..30788)
-----------------
DNA (1443bp)
protein (481aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisophosphate carboxylase n=3 Tax=Oscillochloris trichoides RepID=E1IGS1_9CHLR (db=UNIREF evalue=3.5e-221 bit_score=773.1 identity=80.2 coverage=95.21829521829522)
Displaying items 1-30 of 31 in total

View Taxonomy