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AMDSBA3_44

Alias: AMDSBA3_C43

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Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_44_1
unknown

Not on your lists

2..346
DNA (345bp) protein (115aa)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=1 to=111 evalue=5.3e-13)
AMDSBA3_44_2
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

456..2381
DNA (1926bp) protein (642aa)
hypothetical protein
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Lactobacillus brevis subsp. gravesensis ATCC 27305 RepID=C2D0V2_LACBR (db=UNIREF evalue=2.9e-13 bit_score=82.8 identity=36.9 coverage=18.06853582554517)
Alkaline phosphatase-like (db=superfamily db_id=SSF53649 from=3 to=608 evalue=6.6e-45 interpro_id=IPR017850 interpro_description=Alkaline-phosphatase-like, core domain GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
(db=HMMPfam db_id=PF01663 from=5 to=516 evalue=2.1e-40 interpro_id=IPR002591 interpro_description=Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA3_44_3
unknown

Not on your lists

2787..3023
DNA (237bp) protein (79aa)
2787..3023 + ( gc_cont=0.578)
AMDSBA3_44_4
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3511..4224
DNA (714bp) protein (238aa)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=13 to=142 evalue=3.2e-25 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=6 to=142 evalue=1.0e-21 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
(db=HMMPfam db_id=PF00027 from=27 to=115 evalue=1.6e-16 interpro_id=IPR000595 interpro_description=Cyclic nucleotide-binding domain)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=143 to=212 evalue=5.2e-15)
AMDSBA3_44_5
unknown

Not on your lists

4931..5137
DNA (207bp) protein (69aa)
4931..5137 + ( gc_cont=0.512)
AMDSBA3_44_6
unknown

Not on your lists

5211..5429
DNA (219bp) protein (73aa)
5211..5429 + ( gc_cont=0.511)
AMDSBA3_44_7
Thermofilum sp. 1910b, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

5523..5948
DNA (426bp) protein (142aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
(db=HMMPfam db_id=PF01925 from=8 to=123 evalue=3.8e-06 interpro_id=IPR002781 interpro_description=Protein of unknown function DUF81 GO=Cellular Component: integral to membrane (GO:0016021))
hypothetical protein
AMDSBA3_44_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5990..7252
DNA (1263bp) protein (421aa)
major facilitator superfamily protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=232 to=254)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=298 to=315)
AMDSBA3_44_9
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7342..7473
DNA (132bp) protein (44aa)
NADH OXIDASE-RELATED (db=HMMPanther db_id=PTHR22912:SF2 from=6 to=42 evalue=7.3e-10)
DISULFIDE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR22912 from=6 to=42 evalue=7.3e-10)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=41 evalue=1.9e-07)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00359 NADH oxidase [EC:1.6.-.-] Tax=GWB2_Geobacteraceae_52_12_curated
AMDSBA3_44_10
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7498..8688
DNA (1191bp) protein (397aa)
rubredoxin reductase, selenocysteine-containing
CoA-disulfide reductase n=1 Tax=Natronobacterium gregoryi SP2 RepID=G4GAX6_9EURY (db=UNIREF evalue=5.0e-64 bit_score=250.8 identity=36.1 coverage=99.24433249370277)
seg (db=Seg db_id=seg from=333 to=348)
DISULFIDE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR22912 from=2 to=390 evalue=9.7e-121)
AMDSBA3_44_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8755..9339
DNA (585bp) protein (195aa)
hypothetical protein
Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L028_THERP (db=UNIREF evalue=2.1e-07 bit_score=61.6 identity=34.2 coverage=54.871794871794876)
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=5 to=114 evalue=1.6e-13 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=6 to=109 evalue=2.0e-11)
AMDSBA3_44_12
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10261..10935
DNA (675bp) protein (225aa)
seg (db=Seg db_id=seg from=90 to=111)
no description (db=HMMSmart db_id=SM00345 from=12 to=70 evalue=6.2e-17 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF07729 from=95 to=212 evalue=3.0e-16 interpro_id=IPR011711 interpro_description=GntR, C-terminal)
(db=HMMPfam db_id=PF00392 from=13 to=69 evalue=3.9e-16 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA3_44_13
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(11899..13581)
DNA (1683bp) protein (561aa)
Arylsulfatase A and related enzymes
Sulfatase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2Z0_9BACL (db=UNIREF evalue=9.9e-26 bit_score=124.0 identity=25.2 coverage=65.77540106951871)
seg (db=Seg db_id=seg from=475 to=490)
seg (db=Seg db_id=seg from=386 to=397)
AMDSBA3_44_14
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(13597..14919)
DNA (1323bp) protein (441aa)
yaaU; general substrate transporter
Arabinose efflux permease family protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y398_9FIRM (db=UNIREF evalue=1.8e-30 bit_score=139.4 identity=27.8 coverage=89.56916099773242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=248 to=270)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=76)
AMDSBA3_44_15
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15582..16895
DNA (1314bp) protein (438aa)
extracellular solute-binding protein
extracellular solute-binding protein
Extracellular solute-binding protein family 1 n=2 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius RepID=C8WU51_ALIAD (db=UNIREF evalue=2.6e-98 bit_score=364.8 identity=45.9 coverage=93.37899543378995)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_44_16
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16959..17903
DNA (945bp) protein (315aa)
binding-protein-dependent transport system inner membrane protein rbh
binding-protein-dependent transport system inner membrane protein rbh
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius RepID=F8IEJ2_ALIAT (db=UNIREF evalue=2.1e-81 bit_score=308.1 identity=51.6 coverage=89.52380952380953)
seg (db=Seg db_id=seg from=285 to=299)
AMDSBA3_44_17
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17900..18766
DNA (867bp) protein (289aa)
binding-protein-dependent transport system inner membrane protein
Sugar ABC transporter n=3 Tax=Vibrionales RepID=A5KVN6_9GAMM (db=UNIREF evalue=2.3e-34 bit_score=151.8 identity=30.2 coverage=91.00346020761245)
seg (db=Seg db_id=seg from=119 to=129)
seg (db=Seg db_id=seg from=86 to=109)
AMDSBA3_44_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19158..20342
DNA (1185bp) protein (395aa)
rod shape-determining protein RodA
Rod shape-determining protein RodA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z905_9SPHN (db=UNIREF evalue=7.1e-55 bit_score=220.3 identity=38.7 coverage=80.50632911392405)
seg (db=Seg db_id=seg from=311 to=323)
seg (db=Seg db_id=seg from=271 to=297)
AMDSBA3_44_19
unknown

Not on your lists

20403..20549
DNA (147bp) protein (49aa)
seg (db=Seg db_id=seg from=27 to=39)
AMDSBA3_44_20
unknown

Not on your lists

20542..20667
DNA (126bp) protein (42aa)
20542..20667 + ( gc_cont=0.556)
AMDSBA3_44_21
Halorubrum litoreum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20684..21538
DNA (855bp) protein (285aa)
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase 1 n=6 Tax=Agrobacterium RepID=UPPP1_AGRT5 (db=UNIREF evalue=4.6e-11 bit_score=74.3 identity=26.6 coverage=90.87719298245615)
seg (db=Seg db_id=seg from=232 to=246)
seg (db=Seg db_id=seg from=206 to=218)
AMDSBA3_44_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21677..21898)
DNA (222bp) protein (74aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=64)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I2U5_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ40732.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA3_44_23
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22297..23121)
DNA (825bp) protein (275aa)
IclR family transcriptional regulator
Transcriptional regulator, IclR family n=1 Tax=Nocardioides sp. JS614 RepID=A1SP57_NOCSJ (db=UNIREF evalue=7.0e-17 bit_score=93.6 identity=30.2 coverage=89.81818181818181)
no description (db=Gene3D db_id=G3DSA:3.30.450.40 from=74 to=255 evalue=4.3e-41)
GAF domain-like (db=superfamily db_id=SSF55781 from=74 to=252 evalue=1.0e-40)
AMDSBA3_44_24
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23492..24721
DNA (1230bp) protein (410aa)
Zn-dependent dipeptidase microsomal dipeptidase
Peptidase M19 family protein n=1 Tax=Gordonia effusa NBRC 100432 RepID=H0R6C8_9ACTO (db=UNIREF evalue=1.6e-33 bit_score=149.4 identity=31.9 coverage=70.48780487804878)
(db=HMMPfam db_id=PF01244 from=142 to=406 evalue=2.4e-73 interpro_id=IPR008257 interpro_description=Peptidase M19, renal dipeptidase GO=Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235), Molecular Function: dipeptidyl-peptidase activity (GO:0008239), Molecular Function: dipeptidase activity (GO:0016805))
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=52 to=407 evalue=4.3e-68)
AMDSBA3_44_25
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24765..26381
DNA (1617bp) protein (539aa)
family 5 extracellular solute-binding protein
Oligopeptide ABC transporter n=1 Tax=Oenococcus kitaharae DSM 17330 RepID=G9WHI4_9LACT (db=UNIREF evalue=3.9e-19 bit_score=102.1 identity=24.7 coverage=77.92207792207793)
seg (db=Seg db_id=seg from=8 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_44_26
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26378..27322
DNA (945bp) protein (315aa)
binding-protein-dependent transport system inner membrane protein
ABC-type dipeptide/oligopeptide/nickel transport system, permease, DppB n=1 Tax=Acidianus hospitalis W1 RepID=F4B5D9_ACIHW (db=UNIREF evalue=1.0e-32 bit_score=146.4 identity=27.7 coverage=98.4126984126984)
transmembrane_regions (db=TMHMM db_id=tmhmm from=285 to=307)
transmembrane_regions (db=TMHMM db_id=tmhmm from=235 to=257)
AMDSBA3_44_27
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27315..28178
DNA (864bp) protein (288aa)
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pyrobaculum sp. 1860 RepID=G7VCV8_9CREN (db=UNIREF evalue=6.6e-42 bit_score=176.8 identity=39.5 coverage=86.80555555555556)
seg (db=Seg db_id=seg from=135 to=145)
seg (db=Seg db_id=seg from=98 to=119)
AMDSBA3_44_28
unknown

Not on your lists

28204..28350
DNA (147bp) protein (49aa)
28204..28350 + ( gc_cont=0.558)
AMDSBA3_44_29
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

28365..29663
DNA (1299bp) protein (433aa)
seg (db=Seg db_id=seg from=141 to=167)
Amidase signature (AS) enzymes (db=superfamily db_id=SSF75304 from=2 to=428 evalue=1.1e-101 interpro_id=IPR023631 interpro_description=Amidase signature domain)
AMIDASES (db=PatternScan db_id=PS00571 from=141 to=172 evalue=0.0 interpro_id=IPR020556 interpro_description=Amidase, conserved site)
no description (db=Gene3D db_id=G3DSA:3.90.1300.10 from=2 to=416 evalue=9.4e-96 interpro_id=IPR023631 interpro_description=Amidase signature domain)
AMDSBA3_44_30
Deinococcus deserti, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

29685..30893
DNA (1209bp) protein (403aa)
dipeptidase
dipeptidase
Peptidase M19 renal dipeptidase n=1 Tax=halophilic archaeon DL31 RepID=G2MJH3_9ARCH (db=UNIREF evalue=9.8e-84 bit_score=316.2 identity=44.3 coverage=94.29280397022333)
Displaying items 1-30 of 41 in total

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