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AMDSBA3_46

Alias: AMDSBA3_C45

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_46_1
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3..743)
-----------------
DNA (741bp)
protein (247aa)
IS605 OrfB family transposase
Transposase, IS605 OrfB family n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z397_9EURY (db=UNIREF evalue=5.1e-59 bit_score=233.4 identity=44.0 coverage=99.59514170040485)
(db=HMMPfam db_id=PF01385 from=65 to=247 evalue=1.1e-33 interpro_id=IPR001959 interpro_description=Transposase, probable, IS891/IS1136/IS1341)
(db=HMMPfam db_id=PF12323 from=1 to=45 evalue=2.1e-17 interpro_id=IPR021027 interpro_description=Transposase, putative, helix-turn-helix domain)
AMDSBA3_46_2
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(923..1684)
-----------------
DNA (762bp)
protein (254aa)
ribulose-5-phosphate 4-epimerase-like epimerase or aldolase
Putative uncharacterized protein n=1 Tax=Meyerozyma guilliermondii ATCC 6260 RepID=A5DKW6_PICGU (db=UNIREF evalue=8.4e-57 bit_score=226.1 identity=48.5 coverage=92.91338582677166)
seg (db=Seg db_id=seg from=199 to=209)
ADDUCIN (db=HMMPanther db_id=PTHR10672 from=11 to=248 evalue=7.9e-120)
AMDSBA3_46_3
unknown

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comp(1813..1947)
-----------------
DNA (135bp)
protein (45aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
AMDSBA3_46_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2033..2524)
-----------------
DNA (492bp)
protein (164aa)
hypothetical protein
GAF domain protein (Fragment) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7A2_9BACT (db=UNIREF evalue=1.6e-08 bit_score=65.1 identity=47.1 coverage=40.853658536585364)
seg (db=Seg db_id=seg from=108 to=126)
seg (db=Seg db_id=seg from=27 to=40)
AMDSBA3_46_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3126..3368)
-----------------
DNA (243bp)
protein (81aa)
4Fe-4S ferredoxin
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=42 to=53 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=2 to=79 evalue=1.9e-22)
4Fe-4S ferredoxins (db=superfamily db_id=SSF54862 from=1 to=75 evalue=4.1e-19)
AMDSBA3_46_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3471..5801)
-----------------
DNA (2331bp)
protein (777aa)
CoA-binding domain-containing protein rbh
CoA-binding domain-containing protein rbh
CoA-binding domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TVM8_9FIRM (db=UNIREF evalue=2.4e-256 bit_score=890.6 identity=60.4 coverage=99.22779922779922)
seg (db=Seg db_id=seg from=728 to=745)
AMDSBA3_46_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5885..7069
-----------------
DNA (1185bp)
protein (395aa)
histone deacetylase rbh
Acetoin utilization protein AcuC n=1 Tax=Brevibacterium mcbrellneri ATCC 49030 RepID=D4YMU0_9MICO (db=UNIREF evalue=1.5e-68 bit_score=265.8 identity=37.5 coverage=95.69620253164557)
seg (db=Seg db_id=seg from=128 to=141)
HISTONE DEACETYLASE (db=HMMPanther db_id=PTHR10625 from=36 to=360 evalue=4.3e-111 interpro_id=IPR000286 interpro_description=Histone deacetylase superfamily)
AMDSBA3_46_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7112..8812
-----------------
DNA (1701bp)
protein (567aa)
type III restriction protein res subunit
type III restriction protein res subunit
Type III restriction protein res subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TSF3_9FIRM (db=UNIREF evalue=8.8e-232 bit_score=808.5 identity=71.2 coverage=98.94179894179894)
AMDSBA3_46_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8809..10581
-----------------
DNA (1773bp)
protein (591aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSF4_9FIRM (db=UNIREF evalue=1.3e-89 bit_score=336.3 identity=34.3 coverage=98.30795262267344)
AMDSBA3_46_10
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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10609..12654
-----------------
DNA (2046bp)
protein (682aa)
protease (EC:3.4.21.83)
protease (EC:3.4.21.83)
Oligopeptidase B (Fragment) n=1 Tax=Edwardsiella tarda ATCC 23685 RepID=D4F5A9_EDWTA (db=UNIREF evalue=6.3e-51 bit_score=208.0 identity=31.7 coverage=60.55718475073314)
OLIGOPEPTIDASE B (LYSYL AND ARGININYL OLIGOPEPTIDASE) (db=HMMPanther db_id=PTHR11757:SF3 from=1 to=681 evalue=1.6e-188)
AMDSBA3_46_11
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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12674..16171
-----------------
DNA (3498bp)
protein (1166aa)
family 2 glycoside hydrolase
Beta-glucuronidase n=2 Tax=Pseudovibrio RepID=B6R9K7_9RHOB (db=UNIREF evalue=4.7e-22 bit_score=112.8 identity=25.4 coverage=32.76157804459691)
seg (db=Seg db_id=seg from=237 to=251)
seg (db=Seg db_id=seg from=975 to=986)
AMDSBA3_46_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16173..16898)
-----------------
DNA (726bp)
protein (242aa)
diguanylate phosphodiesterase
Uncharacterized protein n=2 Tax=Vibrio tubiashii RepID=I1DCQ5_9VIBR (db=UNIREF evalue=6.8e-08 bit_score=63.5 identity=27.2 coverage=78.099173553719)
EAL domain-like (db=superfamily db_id=SSF141868 from=9 to=241 evalue=6.8e-47 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
(db=HMMPfam db_id=PF00563 from=12 to=240 evalue=7.4e-45 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA3_46_13
unknown

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comp(16895..17035)
-----------------
DNA (141bp)
protein (47aa)
16895..17035 - ( gc_cont=0.596)
AMDSBA3_46_14
Geobacillus sp. WCH70, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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17127..17495
-----------------
DNA (369bp)
protein (123aa)
hypothetical protein
Uncharacterized protein n=3 Tax=Geobacillus RepID=C5DAK5_GEOSW
AMDSBA3_46_15
unknown

Not on your lists

17492..17641
-----------------
DNA (150bp)
protein (50aa)
17492..17641 + ( gc_cont=0.533)
AMDSBA3_46_16
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(17727..18776)
-----------------
DNA (1050bp)
protein (350aa)
(db=HMMPfam db_id=PF02810 from=159 to=177 evalue=7.2e-09 interpro_id=IPR004027 interpro_description=SEC-C motif)
Sec-C motif (db=superfamily db_id=SSF103642 from=156 to=177 evalue=2.3e-06)
(db=HMMPfam db_id=PF08897 from=8 to=133 evalue=1.4e-05 interpro_id=IPR014993 interpro_description=Protein of unknown function DUF1841)
AMDSBA3_46_17
Streptomyces sp. SirexAA-E, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19070..19558
-----------------
DNA (489bp)
protein (163aa)
flavin reductase domain-containing protein FMN-binding protein
Putative nitrilotriacetate monooxygenase component B (NtaB) n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z1X2_9GAMM (db=UNIREF evalue=8.1e-13 bit_score=79.3 identity=33.3 coverage=92.02453987730061)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=1 to=156 evalue=1.8e-43 interpro_id=IPR009002 interpro_description=FMN-binding split barrel-related)
no description (db=HMMSmart db_id=SM00903 from=10 to=155 evalue=1.7e-42 interpro_id=IPR002563 interpro_description=Flavin reductase-like, FMN-binding GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: flavin reductase activity (GO:0042602), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_46_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19488..19823)
-----------------
DNA (336bp)
protein (112aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSF8_9FIRM (db=UNIREF evalue=1.3e-30 bit_score=137.9 identity=61.2 coverage=86.60714285714286)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I211_SULAT
AMDSBA3_46_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19853..20836)
-----------------
DNA (984bp)
protein (328aa)
2-nitropropane dioxygenase (EC:1.13.12.16) rbh
2-nitropropane dioxygenase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5C4_9DELT (db=UNIREF evalue=1.3e-22 bit_score=112.8 identity=28.6 coverage=91.46341463414635)
Inosine monophosphate dehydrogenase (IMPDH) (db=superfamily db_id=SSF51412 from=2 to=306 evalue=1.3e-55)
seg (db=Seg db_id=seg from=21 to=32)
AMDSBA3_46_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20833..21228)
-----------------
DNA (396bp)
protein (132aa)
hit; histidine triad (HIT) protein
Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7TAR3_NEMVE (db=UNIREF evalue=1.9e-20 bit_score=104.4 identity=50.0 coverage=73.48484848484848)
(db=HMMPfam db_id=PF01230 from=10 to=101 evalue=3.1e-19 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
HISTIDINE TRIAD (HIT) PROTEIN (db=HMMPanther db_id=PTHR23089 from=18 to=127 evalue=4.2e-14 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
AMDSBA3_46_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21457..21711
-----------------
DNA (255bp)
protein (85aa)
(db=HMMPfam db_id=PF03698 from=5 to=79 evalue=1.1e-18 interpro_id=IPR005370 interpro_description=Uncharacterised protein family UPF0180)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I232_SULAT
hypothetical protein
AMDSBA3_46_22
Bacillus akibai, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21889..22695
-----------------
DNA (807bp)
protein (269aa)
yitD; (2R)-phospho-3-sulfolactate synthase, ComA
Phosphosulfolactate synthase n=1 Tax=Frankia sp. EuI1c RepID=E3IZM0_FRASU (db=UNIREF evalue=1.6e-53 bit_score=215.3 identity=46.8 coverage=92.56505576208178)
seg (db=Seg db_id=seg from=251 to=267)
(2r)-phospho-3-sulfolactate synthase ComA (db=superfamily db_id=SSF102110 from=3 to=251 evalue=4.1e-76 interpro_id=IPR003830 interpro_description=(2R)-phospho-3-sulpholactate synthase, ComA GO=Biological Process: coenzyme M biosynthetic process (GO:0019295))
AMDSBA3_46_23
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22989..23717
-----------------
DNA (729bp)
protein (243aa)
5'-nucleotidase
Putative 5'-nucleotidase alr3139 n=2 Tax=Nostocaceae RepID=Y3139_NOSS1 (db=UNIREF evalue=4.3e-18 bit_score=97.4 identity=36.1 coverage=66.2551440329218)
SurE-like (db=superfamily db_id=SSF64167 from=1 to=223 evalue=3.4e-55 interpro_id=IPR002828 interpro_description=Survival protein SurE-like phosphatase/nucleotidase GO=Molecular Function: hydrolase activity (GO:0016787))
(db=HMMPfam db_id=PF01975 from=1 to=164 evalue=1.3e-51 interpro_id=IPR002828 interpro_description=Survival protein SurE-like phosphatase/nucleotidase GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA3_46_24
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24968..25597
-----------------
DNA (630bp)
protein (210aa)
resolvase-like protein
ISC1913-like resolvase n=2 Tax=Desulfurococcaceae RepID=I3TFS3_9CREN (db=UNIREF evalue=1.2e-27 bit_score=129.0 identity=34.8 coverage=97.61904761904762)
seg (db=Seg db_id=seg from=97 to=108)
Resolvase-like (db=superfamily db_id=SSF53041 from=61 to=189 evalue=3.3e-18 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
AMDSBA3_46_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25765..26229
-----------------
DNA (465bp)
protein (155aa)
seg (db=Seg db_id=seg from=9 to=22)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=2 to=132 evalue=1.1e-27)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I237_SULAT
hypothetical protein
AMDSBA3_46_26
unknown

Not on your lists

comp(26193..26345)
-----------------
DNA (153bp)
protein (51aa)
seg (db=Seg db_id=seg from=16 to=32)
AMDSBA3_46_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26381..26743)
-----------------
DNA (363bp)
protein (121aa)
methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSI4_9FIRM (db=UNIREF evalue=6.8e-49 bit_score=198.7 identity=80.7 coverage=97.52066115702479)
METHYLGLYOXAL_SYNTH (db=PatternScan db_id=PS01335 from=54 to=62 evalue=0.0 interpro_id=IPR018148 interpro_description=Methylglyoxal synthase, active site GO=Molecular Function: methylglyoxal synthase activity (GO:0008929), Biological Process: methylglyoxal biosynthetic process (GO:0019242))
MGSA: methylglyoxal synthase (db=HMMTigr db_id=TIGR00160 from=1 to=120 evalue=2.7e-56 interpro_id=IPR004363 interpro_description=Methylglyoxal synthase GO=Molecular Function: methylglyoxal synthase activity (GO:0008929), Biological Process: methylglyoxal biosynthetic process (GO:0019242))
AMDSBA3_46_28
unknown

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comp(27259..27834)
-----------------
DNA (576bp)
protein (192aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
AMDSBA3_46_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27939..28316
-----------------
DNA (378bp)
protein (126aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TSJ9_9FIRM (db=UNIREF evalue=7.4e-30 bit_score=135.6 identity=51.2 coverage=95.23809523809523)
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8TSJ9_SULAD
Displaying 29 items

View Taxonomy