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This organism can only be binned in the context of its binning project CG2_30_FULL_binning. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

AMDSBA3_70

Alias: AMDSBA3_C69

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_70_1
unknown

Not on your lists

comp(45..302)
DNA (258bp) protein (86aa)
45..302 - ( gc_cont=0.531)
AMDSBA3_70_2
unknown

Not on your lists

360..545
DNA (186bp) protein (62aa)
360..545 + ( gc_cont=0.565)
AMDSBA3_70_3
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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542..748
DNA (207bp) protein (69aa)
542..748 + ( gc_cont=0.556)
Plasmid-related protein {ECO:0000313|EMBL:AEP14259.1}; TaxID=338644 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Plasmid-related protein n=1 Tax=Sulfobacillus thermotolerans RepID=G5CIY2_9FIRM
AMDSBA3_70_4
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

729..1331
DNA (603bp) protein (201aa)
filamentation induced by cAMP protein Fic
Cell filamentation protein fic n=44 Tax=Mycobacterium tuberculosis complex RepID=A2VM25_MYCTU (db=UNIREF evalue=5.7e-08 bit_score=63.5 identity=31.4 coverage=80.09950248756219)
seg (db=Seg db_id=seg from=156 to=168)
Fic-like (db=superfamily db_id=SSF140931 from=2 to=155 evalue=1.1e-19)
AMDSBA3_70_5
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1751..2416)
DNA (666bp) protein (222aa)
1751..2416 - ( gc_cont=0.592)
Uncharacterized protein {ECO:0000313|EMBL:AFM40955.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus
Uncharacterized protein n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D581_DESAJ
AMDSBA3_70_6
Vulcanisaeta distributa, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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2838..4250
DNA (1413bp) protein (471aa)
amino acid permease-associated protein
amino acid permease-associated protein
Amino acid transporter n=1 Tax=Picrophilus torridus DSM 9790 RepID=Q6L0H1_PICTO (db=UNIREF evalue=2.0e-104 bit_score=385.2 identity=43.4 coverage=96.39065817409767)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
AMDSBA3_70_7
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4290..5354
DNA (1065bp) protein (355aa)
Zn-dependent alcohol dehydrogenase
L-threonine 3-dehydrogenase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=TDH_SOLUE (db=UNIREF evalue=3.2e-30 bit_score=138.3 identity=29.1 coverage=88.73239436619718)
seg (db=Seg db_id=seg from=193 to=212)
seg (db=Seg db_id=seg from=167 to=184)
AMDSBA3_70_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5480..6814
DNA (1335bp) protein (445aa)
Adenosylmethionine--8-amino-7-oxononanoate transaminase (EC:2.6.1.62)
Aminotransferase, class III n=1 Tax=Aspergillus clavatus NRRL 1 RepID=A1CNE2_ASPCL (db=UNIREF evalue=4.4e-53 bit_score=214.5 identity=32.6 coverage=94.6067415730337)
seg (db=Seg db_id=seg from=59 to=72)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=246 to=283 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA3_70_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6862..8295
DNA (1434bp) protein (478aa)
Aldehyde Dehydrogenase rbh
Aldehyde Dehydrogenase rbh
Aldehyde Dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=G8TY23_9FIRM (db=UNIREF evalue=1.1e-206 bit_score=724.9 identity=76.9 coverage=98.11715481171548)
AMDSBA3_70_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8317..9762
DNA (1446bp) protein (482aa)
seg (db=Seg db_id=seg from=271 to=281)
seg (db=Seg db_id=seg from=299 to=310)
(db=HMMPfam db_id=PF07905 from=6 to=125 evalue=5.9e-28 interpro_id=IPR012914 interpro_description=Purine catabolism PurC-like)
Homeodomain-like (db=superfamily db_id=SSF46689 from=388 to=449 evalue=3.1e-06 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
AMDSBA3_70_11
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9805..11169)
DNA (1365bp) protein (455aa)
class III aminotransferase
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=2 Tax=Geobacter sulfurreducens RepID=BIOA_GEOSL (db=UNIREF evalue=1.7e-71 bit_score=275.8 identity=35.0 coverage=96.26373626373626)
seg (db=Seg db_id=seg from=215 to=228)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=246 to=283 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA3_70_12
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11498..11896
DNA (399bp) protein (133aa)
transposase
Transposase IS200-family protein n=2 Tax=Methanocaldococcaceae RepID=D3S4E3_METSF (db=UNIREF evalue=1.2e-35 bit_score=154.8 identity=53.2 coverage=93.98496240601504)
Transposase IS200-like (db=superfamily db_id=SSF143422 from=2 to=130 evalue=3.4e-38 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
(db=HMMPfam db_id=PF01797 from=13 to=129 evalue=3.7e-38 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBA3_70_13
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11899..12993
DNA (1095bp) protein (365aa)
Transposase, IS605 OrfB family
Putative transposase n=1 Tax=Lactococcus phage 949 RepID=E0YIX8_9CAUD (db=UNIREF evalue=6.6e-39 bit_score=167.2 identity=33.3 coverage=97.26027397260275)
seg (db=Seg db_id=seg from=219 to=230)
seg (db=Seg db_id=seg from=59 to=69)
AMDSBA3_70_14
Paenibacillus sp. FSL R5-192, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13742..15202
DNA (1461bp) protein (487aa)
RNA-directed DNA polymerase (EC:2.7.7.49)
Prophage LambdaSa1 transcriptase/maturase family protein n=1 Tax=uncultured archaeon GZfos14B8 RepID=Q64E53_9ARCH (db=UNIREF evalue=7.4e-62 bit_score=243.8 identity=37.0 coverage=69.60985626283367)
seg (db=Seg db_id=seg from=381 to=395)
seg (db=Seg db_id=seg from=343 to=352)
Displaying 14 items

View Taxonomy