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AMDSBA3_74

Alias: AMDSBA3_C73

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_74_1
unknown

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3..188
DNA (186bp) protein (62aa)
3..188 + ( gc_cont=0.484)
AMDSBA3_74_2
unknown

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comp(233..517)
DNA (285bp) protein (95aa)
233..517 - ( gc_cont=0.537)
AMDSBA3_74_3
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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864..2393
DNA (1530bp) protein (510aa)
transposase
Transposase n=4 Tax=Stigmatella aurantiaca DW4/3-1 RepID=E3FNR6_STIAD (db=UNIREF evalue=3.6e-51 bit_score=208.4 identity=38.7 coverage=67.84313725490196)
seg (db=Seg db_id=seg from=181 to=194)
seg (db=Seg db_id=seg from=166 to=177)
AMDSBA3_74_4
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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2722..3690
DNA (969bp) protein (323aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I694_9ACTO (db=UNIREF evalue=9.5e-114 bit_score=415.6 identity=64.0 coverage=96.90402476780186)
AMDSBA3_74_5
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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3683..4729
DNA (1047bp) protein (349aa)
vanB; D-alanine--D-lactate ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=DDL_CHLCH (db=UNIREF evalue=1.6e-61 bit_score=242.3 identity=41.0 coverage=97.99426934097421)
DALA_DALA_LIGASE_2 (db=PatternScan db_id=PS00844 from=284 to=312 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site)
DALA_DALA_LIGASE_1 (db=PatternScan db_id=PS00843 from=100 to=111 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site)
AMDSBA3_74_6
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4726..5370
DNA (645bp) protein (215aa)
peptidase M15D vanX D-ala-D-ala dipeptidase
D-alanyl-D-alanine dipeptidase n=3 Tax=Bacteria RepID=G0FWZ3_AMYMD (db=UNIREF evalue=2.5e-78 bit_score=297.4 identity=68.3 coverage=93.48837209302326)
Hedgehog/DD-peptidase (db=superfamily db_id=SSF55166 from=1 to=202 evalue=4.1e-71 interpro_id=IPR009045 interpro_description=Hedgehog signalling/DD-peptidase zinc-binding domain)
no description (db=Gene3D db_id=G3DSA:3.30.1380.10 from=1 to=202 evalue=2.7e-70 interpro_id=IPR009045 interpro_description=Hedgehog signalling/DD-peptidase zinc-binding domain)
AMDSBA3_74_7
unknown

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5946..6128
DNA (183bp) protein (61aa)
5946..6128 + ( gc_cont=0.536)
AMDSBA3_74_8
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6073..6561)
DNA (489bp) protein (163aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Streptomyces cattleya NRRL 8057 = DSM 46488 RepID=F8K123_STREN (db=UNIREF evalue=2.7e-08 bit_score=64.3 identity=36.8 coverage=52.14723926380368)
(db=HMMPfam db_id=PF11695 from=6 to=144 evalue=1.6e-24 interpro_id=IPR021708 interpro_description=Domain of unknown function DUF3291)
Uncharacterized protein {ECO:0000313|EMBL:BAN49085.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resin
AMDSBA3_74_9
unknown

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7267..7803
DNA (537bp) protein (179aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=12 to=25)
seg (db=Seg db_id=seg from=77 to=88)
AMDSBA3_74_10
unknown

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7856..8068
DNA (213bp) protein (71aa)
7856..8068 + ( gc_cont=0.535)
AMDSBA3_74_11
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7992..8339)
DNA (348bp) protein (116aa)
membrane protein
Integral membrane protein n=52 Tax=Vibrio RepID=A3GW26_VIBCL (db=UNIREF evalue=1.4e-14 bit_score=84.7 identity=37.7 coverage=95.6896551724138)
transmembrane_regions (db=TMHMM db_id=tmhmm from=77 to=99)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
AMDSBA3_74_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8700..9077
DNA (378bp) protein (126aa)
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family n=2 Tax=Sulfobacillus acidophilus RepID=F8I2A5_SULAT (db=UNIREF evalue=2.0e-35 bit_score=154.1 identity=72.8 coverage=80.95238095238095)
no description (db=HMMSmart db_id=SM00418 from=14 to=93 evalue=5.4e-26 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=96 evalue=2.2e-25)
AMDSBA3_74_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9123..10784
DNA (1662bp) protein (554aa)
mercuric reductase (EC:1.16.1.1)
Mercuric reductase n=2 Tax=Alicyclobacillus RepID=B7DTX8_9BACL (db=UNIREF evalue=7.4e-167 bit_score=592.8 identity=58.5 coverage=98.19494584837545)
seg (db=Seg db_id=seg from=96 to=116)
AMDSBA3_74_14
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10992..11780
DNA (789bp) protein (263aa)
extradiol ring-cleavage dioxygenase class III protein subunit B
Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7ZE69_NECH7 (db=UNIREF evalue=3.8e-12 bit_score=77.8 identity=29.0 coverage=88.212927756654)
Extradiol aromatic ring-opening dioxygenase, DODA type (db=HMMPIR db_id=PIRSF006157 from=1 to=262 evalue=1.5e-115 interpro_id=IPR014436 interpro_description=Extradiol aromatic ring-opening dioxygenase, DODA type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen (GO:0016701), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF02900 from=7 to=260 evalue=1.2e-58 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBA3_74_15
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(12376..12807)
DNA (432bp) protein (144aa)
putative transposase
Transposase n=2 Tax=Beggiatoa sp. PS RepID=A7C5N7_9GAMM (db=UNIREF evalue=1.4e-16 bit_score=91.7 identity=41.1 coverage=85.41666666666666)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=141 evalue=1.4e-29 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:1.10.740.10 from=32 to=129 evalue=1.1e-13 interpro_id=IPR014737 interpro_description=Transposase, Tn5-like, C-terminal)
AMDSBA3_74_16
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(13079..13534)
DNA (456bp) protein (152aa)
transposase Tn5
Transposase IS4 family protein n=2 Tax=Singulisphaera acidiphila DSM 18658 RepID=H1N7I8_9PLAN (db=UNIREF evalue=1.0e-17 bit_score=95.5 identity=37.9 coverage=91.44736842105263)
no description (db=Gene3D db_id=G3DSA:3.90.350.10 from=19 to=148 evalue=1.1e-20 interpro_id=IPR014736 interpro_description=Transposase, Tn5-like, core)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=19 to=149 evalue=6.1e-19 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
Displaying 16 items

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