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AMDSBA3_89

Alias: AMDSBA3_C88

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_89_1
unknown

Not on your lists

3..191
-----------------
DNA (189bp)
protein (63aa)
seg (db=Seg db_id=seg from=38 to=53)
AMDSBA3_89_2
unknown

Not on your lists

209..781
-----------------
DNA (573bp)
protein (191aa)
seg (db=Seg db_id=seg from=165 to=176)
seg (db=Seg db_id=seg from=125 to=147)
AMDSBA3_89_3
unknown

Not on your lists

784..1290
-----------------
DNA (507bp)
protein (169aa)
seg (db=Seg db_id=seg from=102 to=112)
(db=HMMPfam db_id=PF05708 from=27 to=142 evalue=1.8e-06)
AMDSBA3_89_4
unknown

Not on your lists

1315..1641
-----------------
DNA (327bp)
protein (109aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
seg (db=Seg db_id=seg from=86 to=105)
AMDSBA3_89_5
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1654..2091
-----------------
DNA (438bp)
protein (146aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Desulfosporosinus acidiphilus SJ4 RepID=I4D830_9FIRM (db=UNIREF evalue=9.8e-18 bit_score=95.5 identity=39.0 coverage=78.08219178082192)
seg (db=Seg db_id=seg from=27 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
AMDSBA3_89_6
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2081..2554
-----------------
DNA (474bp)
protein (158aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Desulfosporosinus acidiphilus SJ4 RepID=I4D3H7_9FIRM (db=UNIREF evalue=8.9e-49 bit_score=198.7 identity=57.9 coverage=95.56962025316456)
AMDSBA3_89_7
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2682..3467
-----------------
DNA (786bp)
protein (262aa)
Cysteine proteinases (db=superfamily db_id=SSF54001 from=32 to=243 evalue=2.5e-11)
no description (db=Gene3D db_id=G3DSA:3.90.70.10 from=32 to=229 evalue=1.6e-05)
xylellain
Xylellain n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WQ88_9CYAN
AMDSBA3_89_8
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3480..4271
-----------------
DNA (792bp)
protein (264aa)
Uncharacterized protein n=1 Tax=Microcystis sp. T1-4 RepID=I4IA90_9CHRO (db=UNIREF evalue=4.2e-19 bit_score=100.9 identity=38.2 coverage=58.71212121212122)
seg (db=Seg db_id=seg from=125 to=143)
seg (db=Seg db_id=seg from=76 to=90)
seg (db=Seg db_id=seg from=239 to=258)
AMDSBA3_89_9
unknown

Not on your lists

4279..4731
-----------------
DNA (453bp)
protein (151aa)
seg (db=Seg db_id=seg from=137 to=149)
seg (db=Seg db_id=seg from=91 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBA3_89_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5128..5406
-----------------
DNA (279bp)
protein (93aa)
integrase family protein
Integrase family protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TKZ0_9CHLR (db=UNIREF evalue=5.7e-11 bit_score=72.4 identity=41.0 coverage=86.02150537634408)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=2 to=78 evalue=1.1e-16 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF00589 from=6 to=70 evalue=3.5e-14 interpro_id=IPR002104 interpro_description=Integrase, catalytic GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBA3_89_11
Candidatus Hamiltonella defensa, Candidatus Hamiltonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6075..8771
-----------------
DNA (2697bp)
protein (899aa)
restriction endonuclease
restriction endonuclease
Putative restriction endonuclease, N6_Mtase domain protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6L3_HAMD5 (db=UNIREF evalue=1.9e-233 bit_score=814.7 identity=47.7 coverage=96.7741935483871)
seg (db=Seg db_id=seg from=705 to=718)
AMDSBA3_89_12
unknown

Not on your lists

8933..9097
-----------------
DNA (165bp)
protein (55aa)
seg (db=Seg db_id=seg from=15 to=33)
AMDSBA3_89_13
unknown

Not on your lists

9164..9325
-----------------
DNA (162bp)
protein (54aa)
seg (db=Seg db_id=seg from=4 to=16)
Displaying 13 items

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