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AMDSBA3_90

Alias: AMDSBA3_C89

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_90_1
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2..232)
DNA (231bp) protein (77aa)
DNA polymerase
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L5B6_9BACI (db=UNIREF evalue=2.3e-26 bit_score=123.2 identity=70.1 coverage=98.7012987012987)
(db=HMMPfam db_id=PF00078 from=8 to=61 evalue=2.2e-06 interpro_id=IPR000477 interpro_description=Reverse transcriptase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
DNA polymerase {ECO:0000313|EMBL:AIQ14159.1}; TaxID=44251 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus (Paenibacillus azotofixans)
AMDSBA3_90_2
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(383..994)
DNA (612bp) protein (204aa)
RNA-directed DNA polymerase
Reverse transcriptase n=1 Tax=Acidithiobacillus sp. GGI-221 RepID=F8XTI3_9GAMM (db=UNIREF evalue=3.4e-24 bit_score=117.5 identity=38.5 coverage=98.0392156862745)
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=19 to=164 evalue=9.2e-09)
(db=HMMPfam db_id=PF00078 from=15 to=88 evalue=5.2e-07 interpro_id=IPR000477 interpro_description=Reverse transcriptase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
AMDSBA3_90_3
unknown

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1401..1715
DNA (315bp) protein (105aa)
1401..1715 + ( gc_cont=0.597)
AMDSBA3_90_4
Paenibacillus stellifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1804..2115)
DNA (312bp) protein (104aa)
1804..2115 - ( gc_cont=0.641)
DNA polymerase
DNA polymerase {ECO:0000313|EMBL:AIQ65239.1}; TaxID=169760 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus stellifer.;"
AMDSBA3_90_5
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2079..2228)
DNA (150bp) protein (50aa)
2079..2228 - ( gc_cont=0.580)
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:EGL83451.1}; TaxID=986075 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="Caldalkal
AMDSBA3_90_6
Arthrospira maxima, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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2787..3074
DNA (288bp) protein (96aa)
DNA polymerase beta domain-containing protein
DNA polymerase beta domain protein region n=1 Tax=Methanosaeta harundinacea 6Ac RepID=G7WQQ6_METH6 (db=UNIREF evalue=1.8e-15 bit_score=87.4 identity=50.0 coverage=92.70833333333334)
seg (db=Seg db_id=seg from=54 to=69)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=1 to=95 evalue=9.3e-19)
AMDSBA3_90_7
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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3071..3421
DNA (351bp) protein (117aa)
hypothetical protein
UPF0331 protein MJ0127 n=2 Tax=Methanocaldococcus RepID=Y127_METJA (db=UNIREF evalue=4.0e-14 bit_score=83.2 identity=37.2 coverage=78.63247863247864)
(db=HMMPfam db_id=PF01934 from=12 to=104 evalue=1.1e-19 interpro_id=IPR008201 interpro_description=Protein of unknown function DUF86)
hypothetical protein SCB01_10295 n=1 Tax=Synechococcus sp. CB0101 RepID=UPI0002001355
AMDSBA3_90_8
Bacillus mycoides, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3611..4414
DNA (804bp) protein (268aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Bacillus cereus RepID=C2Z8I4_BACCE (db=UNIREF evalue=4.2e-14 bit_score=84.3 identity=25.8 coverage=94.77611940298507)
(db=HMMPfam db_id=PF12395 from=151 to=260 evalue=5.5e-18 interpro_id=IPR022123 interpro_description=Protein of unknown function DUF3658)
(db=HMMPfam db_id=PF08874 from=4 to=120 evalue=3.7e-14 interpro_id=IPR014973 interpro_description=Protein of unknown function DUF1835)
AMDSBA3_90_9
unknown

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5368..5625
DNA (258bp) protein (86aa)
5368..5625 + ( gc_cont=0.574)
AMDSBA3_90_10
unknown

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5804..6817
DNA (1014bp) protein (338aa)
seg (db=Seg db_id=seg from=64 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_90_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7974..8204
DNA (231bp) protein (77aa)
integrase catalytic subunit
Transposase n=5 Tax=Bifidobacterium RepID=E0QB23_9BIFI (db=UNIREF evalue=7.7e-14 bit_score=81.6 identity=50.7 coverage=94.8051948051948)
Integrase catalytic region {ECO:0000313|EMBL:AEJ38736.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Su
Integrase catalytic region n=2 Tax=Sulfobacillus acidophilus RepID=F8I7M9_SULAT
AMDSBA3_90_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8182..8646
DNA (465bp) protein (155aa)
integrase catalytic subunit
Putative uncharacterized protein (Fragment) n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GCC8_9ACTN (db=UNIREF evalue=1.0e-09 bit_score=68.9 identity=34.3 coverage=92.90322580645162)
Integrase catalytic region {ECO:0000313|EMBL:AEJ38736.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Su
Integrase catalytic region n=2 Tax=Sulfobacillus acidophilus RepID=F8I7M9_SULAT
AMDSBA3_90_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8643..8882
DNA (240bp) protein (80aa)
integrase catalytic subunit
Integrase catalytic region n=3 Tax=Sulfobacillus acidophilus RepID=G8TYR2_9FIRM (db=UNIREF evalue=3.8e-24 bit_score=115.9 identity=74.3 coverage=91.25)
Uncharacterized protein {ECO:0000313|EMBL:AEW04027.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA3_90_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8943..9197
DNA (255bp) protein (85aa)
IstB domain-containing protein ATP-binding protein
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:AEJ40396.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.
IstB domain protein ATP-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IAS4_SULAT
Displaying 14 items

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