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AMDSBA3_92

Alias: AMDSBA3_C91

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_92_1
unknown

Not on your lists

214..309
-----------------
DNA (96bp)
protein (32aa)
214..309 + ( gc_cont=0.583)
AMDSBA3_92_2
unknown

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comp(318..614)
-----------------
DNA (297bp)
protein (99aa)
318..614 - ( gc_cont=0.566)
AMDSBA3_92_3
unknown

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comp(744..1448)
-----------------
DNA (705bp)
protein (235aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=15 to=29)
AMDSBA3_92_4
unknown

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1658..1960
-----------------
DNA (303bp)
protein (101aa)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=30 to=89 evalue=9.2e-06)
AMDSBA3_92_5
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2683..3132
-----------------
DNA (450bp)
protein (150aa)
methyl-accepting chemotaxis sensory transducer
Putative methyl-accepting chemotaxis AlkN n=2 Tax=Alcanivorax RepID=ALKN_ALCBS (db=UNIREF evalue=6.3e-12 bit_score=76.3 identity=29.7 coverage=98.66666666666667)
seg (db=Seg db_id=seg from=92 to=99)
seg (db=Seg db_id=seg from=39 to=50)
AMDSBA3_92_6
Pseudomonas sp. Chol1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3125..3499
-----------------
DNA (375bp)
protein (125aa)
seg (db=Seg db_id=seg from=41 to=61)
seg (db=Seg db_id=seg from=73 to=94)
(db=HMMPfam db_id=PF00015 from=2 to=103 evalue=3.5e-08 interpro_id=IPR004089 interpro_description=Chemotaxis methyl-accepting receptor, signalling GO=Molecular Function: signal transducer activity (GO:0004871), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020))
Chemotaxis transducer n=1 Tax=Pseudomonas sp. Chol1 RepID=K5Y551_9PSED
AMDSBA3_92_7
unknown

Not on your lists

3539..3895
-----------------
DNA (357bp)
protein (119aa)
3539..3895 + ( gc_cont=0.569)
AMDSBA3_92_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3929..4789
-----------------
DNA (861bp)
protein (287aa)
seg (db=Seg db_id=seg from=272 to=286)
seg (db=Seg db_id=seg from=206 to=210)
(db=HMMPfam db_id=PF00015 from=219 to=280 evalue=1.1e-10 interpro_id=IPR004089 interpro_description=Chemotaxis methyl-accepting receptor, signalling GO=Molecular Function: signal transducer activity (GO:0004871), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020))
CHEMTRNSDUCR (db=FPrintScan db_id=PR00260 from=178 to=207 evalue=3.1e-06 interpro_id=IPR004090 interpro_description=Chemotaxis methyl-accepting receptor GO=Molecular Function: signal transducer activity (GO:0004871), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020))
AMDSBA3_92_9
unknown

Not on your lists

4779..5156
-----------------
DNA (378bp)
protein (126aa)
coiled-coil (db=Coil db_id=coil from=24 to=45 evalue=NA)
AMDSBA3_92_10
unknown

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5153..5326
-----------------
DNA (174bp)
protein (58aa)
seg (db=Seg db_id=seg from=8 to=19)
AMDSBA3_92_11
unknown

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5265..5717
-----------------
DNA (453bp)
protein (151aa)
5265..5717 + ( gc_cont=0.598)
AMDSBA3_92_12
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(5886..6215)
-----------------
DNA (330bp)
protein (110aa)
DNA polymerase beta domain-containing protein
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=5 to=105 evalue=6.7e-14)
(db=HMMPfam db_id=PF01909 from=21 to=104 evalue=3.8e-08 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
DNA polymerase beta domain protein region n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LZW0_ACIFD
AMDSBA3_92_13
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6496..6873)
-----------------
DNA (378bp)
protein (126aa)
PilT protein domain-containing protein
PilT protein domain-containing protein n=2 Tax=Streptomyces filamentosus RepID=D6ATN7_STRFL (db=UNIREF evalue=1.1e-14 bit_score=85.1 identity=37.5 coverage=93.65079365079364)
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=124 evalue=2.5e-16)
(db=HMMPfam db_id=PF01850 from=3 to=118 evalue=2.6e-06 interpro_id=IPR002716 interpro_description=PilT protein, N-terminal)
AMDSBA3_92_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6873..7115)
-----------------
DNA (243bp)
protein (81aa)
prevent-host-death family protein
Prevent-host-death protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V913_9RHOB (db=UNIREF evalue=1.1e-07 bit_score=61.2 identity=36.7 coverage=95.06172839506173)
(db=HMMPfam db_id=PF02604 from=1 to=41 evalue=1.4e-13 interpro_id=IPR006442 interpro_description=Bacteriophage P1, prevent-host-death protein)
YefM-like (db=superfamily db_id=SSF143120 from=1 to=41 evalue=1.3e-09)
Displaying 14 items

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