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AMDSBA3_45_15

Organism: S._acidophilus_IM3

near complete RP 45 / 55 MC: 1 BSCG 50 / 51 ASCG 0 / 38
Location: comp(16056..17060)

Top 3 Functional Annotations

Value Algorithm Source
rluD; RluA family pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 51.5
  • Coverage: 326.0
  • Bit_score: 320
  • Evalue 5.20e-85
  • rbh
Ribosomal large subunit pseudouridine synthase D n=1 Tax=Nitrosomonas europaea ATCC 19718 RepID=RLUD_NITEU (db=UNIREF evalue=3.2e-48 bit_score=198.0 identity=38.7 coverage=90.14925373134328) similarity UNIREF
DB: UNIREF
  • Identity: 38.7
  • Coverage: 90.15
  • Bit_score: 198
  • Evalue 3.20e-48
PSI_RLU (db=PatternScan db_id=PS01129 from=135 to=149 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: PatternScan
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 0.0

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Taxonomy

Sulfobacillus acidophilus → Sulfobacillus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1005
ATGGAAAGTCGGAGCATTGAGGTCGATGCGGGTTCTGCTGGTCAGCGGTTAGACCGATTTATGGTGAAGGCTTGGCCGGATCATTCCCGTTCGTTTTGGCAGCGCCAGATTGATGCCGGTCAAGTTTTGGTTAATGGCAAGGCTGGTAAGGCGGGCCATTTGGTGAAAGGTGGCCAAATGGTCACGGTGCGTTGGGAGGCGACCGAACCGCCTCAACTGGACTTGGCGAATGGTCCGTCGCATTGGCCCGACTGGGTCGTGTACCATGATGCCGCGGTGATTGTGGTGAACAAACCGCGTCGGTTGGTTGTCCATCCATCCGCTGGTCATTGGGATGACAGTGTGGTCCAGCAGTTGGGGTTCTGGCTCTCCGATAGGGATGGCGGCATGCGCCCAGGTGTTGTCCATCGCCTGGATCGGGATACCAGTGGTCTTATGGTCATCGCACGCACCCCGAAGGCTCGGGAGATTCTGGCGTCTGCGATTTTCGCGCGGGACGTGGTCCGACAATATGTGGCCGTTGTGCGGGGCATGCTCACTCCTTTAAATGGCGTGATTGACGCTCCAATAGGTCGTGACTGGAACCATCGTTTAAAAATGGCGGTGACCCAGGACGGGCGCCCGGCCCGCACCCACTATCGCACGTTGGCCCACTGGCCCGGATTTAGCCTGGTTCAATGTGGGTTAGAGACCGGTAGGACTCATCAAATTCGCGTGCATTTGGCCTGGTTAGGGCATCCGGTGCTGGGTGACGTGCTTTACGGTGGACGTCACCCGATGTTTACGCAAGGGCAGTTGCTGCACGCAGGACGTCTCGTCTTTTATCATCCCGTGCGCGATGAATTGATGGAGTTTGTCGCCCCGGTTCCCGAGGACTGGCGCGCTTTGACGCATTTAGGCACAGCCAGCGTGCGCGAACCGGAAGTGTATGCAGGCACTGCCGAGCCCTTGACGCATCAGTGGCTGTCGAGCTTAGGTGTTTTTGTGGTGGCATCTAACTCTTGA
PROTEIN sequence
Length: 335
MESRSIEVDAGSAGQRLDRFMVKAWPDHSRSFWQRQIDAGQVLVNGKAGKAGHLVKGGQMVTVRWEATEPPQLDLANGPSHWPDWVVYHDAAVIVVNKPRRLVVHPSAGHWDDSVVQQLGFWLSDRDGGMRPGVVHRLDRDTSGLMVIARTPKAREILASAIFARDVVRQYVAVVRGMLTPLNGVIDAPIGRDWNHRLKMAVTQDGRPARTHYRTLAHWPGFSLVQCGLETGRTHQIRVHLAWLGHPVLGDVLYGGRHPMFTQGQLLHAGRLVFYHPVRDELMEFVAPVPEDWRALTHLGTASVREPEVYAGTAEPLTHQWLSSLGVFVVASNS*