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AMDSBA3_45

Alias: AMDSBA3_C44

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_45_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(173..1012)
-----------------
DNA (840bp)
protein (280aa)
D-amino-acid transaminase n=2 Tax=Sulfobacillus acidophilus RepID=G8TXL8_9FIRM (db=UNIREF evalue=1.6e-101 bit_score=374.8 identity=67.8 coverage=98.21428571428571)
D-amino-acid transaminase (EC:2.6.1.21) rbh
D-amino-acid transaminase (EC:2.6.1.21) rbh
AMDSBA3_45_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1188..1388)
-----------------
DNA (201bp)
protein (67aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX65_9FIRM (db=UNIREF evalue=7.4e-21 bit_score=104.8 identity=74.2 coverage=97.01492537313433)
hypothetical protein
seg (db=Seg db_id=seg from=49 to=64)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX65_SULAD
AMDSBA3_45_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1515..3014)
-----------------
DNA (1500bp)
protein (500aa)
EmrB/QacA subfamily drug resistance transporter rbh
Uncharacterized protein n=2 Tax=Magnaporthe oryzae 70-15 RepID=G4MZJ8_MAGO7 (db=UNIREF evalue=2.7e-19 bit_score=102.4 identity=24.7 coverage=94.0)
transmembrane_regions (db=TMHMM db_id=tmhmm from=188 to=207)
transmembrane_regions (db=TMHMM db_id=tmhmm from=219 to=241)
AMDSBA3_45_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3218..4804
-----------------
DNA (1587bp)
protein (529aa)
hypothetical protein
Fibronectin-binding A, N-terminal domain protein n=2 Tax=Megasphaera RepID=D3LVK5_9FIRM (db=UNIREF evalue=5.7e-23 bit_score=114.8 identity=28.7 coverage=49.9054820415879)
seg (db=Seg db_id=seg from=454 to=477)
coiled-coil (db=Coil db_id=coil from=256 to=277 evalue=NA)
AMDSBA3_45_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4808..5389)
-----------------
DNA (582bp)
protein (194aa)
pyrE; orotate phosphoribosyltransferase
Orotate phosphoribosyltransferase n=6 Tax=Thermotoga RepID=PYRE_THEMA (db=UNIREF evalue=1.3e-38 bit_score=165.2 identity=45.8 coverage=90.72164948453609)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=88)
pyrE_Therm: orotate phosphoribosyltransfer (db=HMMTigr db_id=TIGR01367 from=13 to=191 evalue=2.3e-52 interpro_id=IPR006273 interpro_description=Orotate phosphoribosyltransferase, Thermus type GO=Molecular Function: orotate phosphoribosyltransferase activity (GO:0004588), Biological Process: pyrimidine base biosynthetic process (GO:0019856))
AMDSBA3_45_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5373..6077)
-----------------
DNA (705bp)
protein (235aa)
pyrF; orotidine 5'-phosphate decarboxylase
Orotidine 5'-phosphate decarboxylase n=3 Tax=Bacillus RepID=PYRF_BACLD (db=UNIREF evalue=2.9e-27 bit_score=127.9 identity=38.0 coverage=94.8936170212766)
seg (db=Seg db_id=seg from=69 to=83)
seg (db=Seg db_id=seg from=134 to=147)
AMDSBA3_45_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6074..7000)
-----------------
DNA (927bp)
protein (309aa)
dihydroorotate dehydrogenase family protein (EC:1.3.98.1) rbh
Dihydroorotate dehydrogenase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M5U1_9FIRM (db=UNIREF evalue=4.0e-77 bit_score=293.9 identity=49.7 coverage=94.8220064724919)
seg (db=Seg db_id=seg from=297 to=308)
DHODEHASE_2 (db=PatternScan db_id=PS00912 from=239 to=259 evalue=0.0 interpro_id=IPR001295 interpro_description=Dihydroorotate dehydrogenase, conserved site GO=Molecular Function: dihydroorotate dehydrogenase activity (GO:0004152), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_45_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6997..7809)
-----------------
DNA (813bp)
protein (271aa)
pyrDII; hypothetical protein
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=10 Tax=Bacillus RepID=PYRK_BACA2 (db=UNIREF evalue=3.8e-31 bit_score=141.0 identity=37.3 coverage=82.65682656826569)
seg (db=Seg db_id=seg from=16 to=23)
Cytochrome-c3 hydrogenase, gamma subunit (db=HMMPIR db_id=PIRSF006816 from=8 to=270 evalue=6.5e-64 interpro_id=IPR012165 interpro_description=Cytochrome-c3 hydrogenase, gamma subunit GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
AMDSBA3_45_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7766..10996)
-----------------
DNA (3231bp)
protein (1077aa)
carbamoyl-phosphate synthase large subunit (EC:6.3.4.16) rbh
carbamoyl-phosphate synthase large subunit (EC:6.3.4.16) rbh
Carbamoyl-phosphate synthase large chain, N-terminal section n=4 Tax=Methanocaldococcus RepID=CARB1_METJA (db=UNIREF evalue=1.5e-152 bit_score=546.2 identity=57.4 coverage=43.361188486536676)
AMDSBA3_45_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10989..12068)
-----------------
DNA (1080bp)
protein (360aa)
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Methanococcus vannielii SB RepID=CARA_METVS (db=UNIREF evalue=4.4e-59 bit_score=234.2 identity=39.6 coverage=98.05555555555556)
CPSaseIIsmall: carbamoyl-phosphate synt (db=HMMTigr db_id=TIGR01368 from=3 to=353 evalue=4.2e-157 interpro_id=IPR006274 interpro_description=Carbamoyl-phosphate synthase, small subunit GO=Biological Process: glutamine catabolic process (GO:0006543), Biological Process: carbamoyl phosphate biosynthetic process (GO:0070409))
CARBAMOYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11405 from=3 to=349 evalue=1.4e-137)
AMDSBA3_45_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12043..13368)
-----------------
DNA (1326bp)
protein (442aa)
pyrC; dihydroorotase, multifunctional complex type
Dihydroorotase n=10 Tax=Thermotoga RepID=PYRC_THEMA (db=UNIREF evalue=1.9e-35 bit_score=156.0 identity=31.7 coverage=83.0316742081448)
seg (db=Seg db_id=seg from=83 to=94)
seg (db=Seg db_id=seg from=36 to=51)
AMDSBA3_45_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13361..14143)
-----------------
DNA (783bp)
protein (261aa)
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=2 Tax=Acaryochloris RepID=PYRB_ACAM1 (db=UNIREF evalue=1.9e-56 bit_score=224.9 identity=47.2 coverage=95.40229885057471)
CARBAMOYLTRANSFERASE (db=PatternScan db_id=PS00097 from=4 to=11 evalue=0.0 interpro_id=IPR006130 interpro_description=Aspartate/ornithine carbamoyltransferase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: amino acid binding (GO:0016597), Molecular Function: carboxyl- or carbamoyltransferase activity (GO:0016743))
CARBAMOYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11405 from=2 to=258 evalue=4.3e-102)
AMDSBA3_45_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14274..14804)
-----------------
DNA (531bp)
protein (177aa)
bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein pyrR 2 n=7 Tax=Lactobacillus plantarum RepID=PYRR2_LACPL (db=UNIREF evalue=6.5e-40 bit_score=169.5 identity=51.2 coverage=89.83050847457628)
seg (db=Seg db_id=seg from=68 to=79)
no description (db=Gene3D db_id=G3DSA:3.40.50.2020 from=2 to=173 evalue=1.1e-51)
AMDSBA3_45_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15205..16104
-----------------
DNA (900bp)
protein (300aa)
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel n=2 Tax=Sulfobacillus acidophilus RepID=G8TX51_9FIRM (db=UNIREF evalue=3.5e-78 bit_score=297.4 identity=51.4 coverage=93.66666666666667)
seg (db=Seg db_id=seg from=83 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
AMDSBA3_45_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16056..17060)
-----------------
DNA (1005bp)
protein (335aa)
rluD; RluA family pseudouridine synthase rbh
Ribosomal large subunit pseudouridine synthase D n=1 Tax=Nitrosomonas europaea ATCC 19718 RepID=RLUD_NITEU (db=UNIREF evalue=3.2e-48 bit_score=198.0 identity=38.7 coverage=90.14925373134328)
PSI_RLU (db=PatternScan db_id=PS01129 from=135 to=149 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=10 to=301 evalue=2.5e-98 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
AMDSBA3_45_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17425..17910)
-----------------
DNA (486bp)
protein (162aa)
Lipoprotein signal peptidase n=2 Tax=Sulfobacillus acidophilus RepID=G8TX49_9FIRM (db=UNIREF evalue=4.7e-45 bit_score=186.4 identity=59.3 coverage=88.88888888888889)
signal peptidase II (EC:3.4.23.36)
seg (db=Seg db_id=seg from=91 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
AMDSBA3_45_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17907..20636)
-----------------
DNA (2730bp)
protein (910aa)
isoleucyl-tRNA synthetase (EC:6.1.1.5) rbh
isoleucyl-tRNA synthetase (EC:6.1.1.5) rbh
Valine--tRNA ligase n=1 Tax=Nanoarchaeum equitans Kin4-M RepID=SYV_NANEQ (db=UNIREF evalue=1.0e-16 bit_score=94.7 identity=26.7 coverage=23.736263736263734)
ileS: isoleucine--tRNA ligase (db=HMMTigr db_id=TIGR00392 from=13 to=836 evalue=0.0 interpro_id=IPR002301 interpro_description=Isoleucyl-tRNA synthetase GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: isoleucine-tRNA ligase activity (GO:0004822), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428))
AMDSBA3_45_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21397..21885)
-----------------
DNA (489bp)
protein (163aa)
coiled-coil (db=Coil db_id=coil from=86 to=139 evalue=NA)
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
(db=HMMPfam db_id=PF05103 from=3 to=133 evalue=1.1e-44 interpro_id=IPR007793 interpro_description=DivIVA)
DivI1A_domain: DivIVA domain (db=HMMTigr db_id=TIGR03544 from=3 to=36 evalue=4.2e-16 interpro_id=IPR019933 interpro_description=DivIVA domain)
AMDSBA3_45_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21900..22211)
-----------------
DNA (312bp)
protein (104aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX46_9FIRM (db=UNIREF evalue=5.5e-31 bit_score=139.0 identity=68.8 coverage=91.34615384615384)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
AMDSBA3_45_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22212..22664)
-----------------
DNA (453bp)
protein (151aa)
Cell division protein sepF
Cell division protein SepF 2 n=1 Tax=Desulfotomaculum reducens MI-1 PF2_DESRM">RepID=SEPF2_DESRM (db=UNIREF evalue=1.5e-16 bit_score=91.7 identity=33.8 coverage=91.3907284768212)
seg (db=Seg db_id=seg from=13 to=30)
(db=HMMPfam db_id=PF04472 from=63 to=134 evalue=2.1e-23 interpro_id=IPR007561 interpro_description=Cell division protein SepF/SepF-related GO=Biological Process: barrier septum assembly (GO:0000917))
AMDSBA3_45_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22745..23443)
-----------------
DNA (699bp)
protein (233aa)
hypothetical protein
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8D9_9FIRM (db=UNIREF evalue=7.5e-28 bit_score=129.8 identity=36.4 coverage=85.83690987124464)
PLP-binding barrel (db=superfamily db_id=SSF51419 from=1 to=226 evalue=7.8e-62)
no description (db=Gene3D db_id=G3DSA:3.20.20.10 from=2 to=229 evalue=1.6e-56)
AMDSBA3_45_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23425..24213)
-----------------
DNA (789bp)
protein (263aa)
multi-copper polyphenol oxidoreductase, laccase
Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SJJ1_NEMVE (db=UNIREF evalue=7.2e-19 bit_score=100.1 identity=30.1 coverage=96.57794676806084)
CNF1/YfiH-like putative cysteine hydrolases (db=superfamily db_id=SSF64438 from=3 to=260 evalue=8.9e-70 interpro_id=IPR011324 interpro_description=Cytotoxic necrotizing factor-like, catalytic)
no description (db=Gene3D db_id=G3DSA:3.60.140.10 from=11 to=261 evalue=2.6e-66 interpro_id=IPR003730 interpro_description=Multi-copper polyphenol oxidoreductase, laccase)
AMDSBA3_45_23
actinobacterium acAMD-2, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24848..25966)
-----------------
DNA (1119bp)
protein (373aa)
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=1 Tax=Alteromonas sp. S89 RepID=UPI000255B604 (db=UNIREF evalue=3.8e-58 bit_score=231.1 identity=37.8 coverage=97.85522788203752)
hypothetical protein
seg (db=Seg db_id=seg from=116 to=133)
seg (db=Seg db_id=seg from=181 to=200)
AMDSBA3_45_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26517..26777)
-----------------
DNA (261bp)
protein (87aa)
YlmC/YmxH family sporulation protein
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7APY2_9FIRM (db=UNIREF evalue=5.9e-10 bit_score=68.9 identity=40.8 coverage=86.20689655172413)
seg (db=Seg db_id=seg from=17 to=32)
spore_YlmC_YmxH: sporulation protein, (db=HMMTigr db_id=TIGR02888 from=3 to=76 evalue=3.8e-33 interpro_id=IPR014238 interpro_description=Sporulation protein YlmC/YmxH)
AMDSBA3_45_25
unknown

Not on your lists

comp(26830..27282)
-----------------
DNA (453bp)
protein (151aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_45_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27282..28055)
-----------------
DNA (774bp)
protein (258aa)
sporulation sigma factor SigG
sporulation sigma factor SigG
RNA polymerase sigma-G factor n=3 Tax=Clostridium acetobutylicum RepID=RPSG_CLOAB (db=UNIREF evalue=9.3e-104 bit_score=382.1 identity=72.8 coverage=99.2248062015504)
AMDSBA3_45_27
unknown

Not on your lists

28645..28746
-----------------
DNA (102bp)
protein (34aa)
28645..28746 + ( gc_cont=0.510)
Displaying 27 items

View Taxonomy