ggKbase home page

AMDSBA4_1

Alias: AMDSBA4_C0

Search features with annotation key words

Displaying items 1-30 of 180 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_1_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47..1159
DNA (1113bp) protein (371aa)
shikimate/quinate 5-dehydrogenase
shikimate/quinate 5-dehydrogenase
Shikimate/quinate 5-dehydrogenase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRQ5_9FIRM (db=UNIREF evalue=9.0e-68 bit_score=263.1 identity=48.4 coverage=72.77628032345014)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=127 to=266 evalue=1.1e-14)
AMDSBA4_1_2
unknown

Not on your lists

comp(1165..2124)
DNA (960bp) protein (320aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=23 evalue=7.0)
AMDSBA4_1_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2324..3646)
DNA (1323bp) protein (441aa)
glutamine synthetase, type I (EC:6.3.1.2) rbh
glutamine synthetase, type I (EC:6.3.1.2) rbh
Glutamine synthetase n=2 Tax=Methanocella paludicola SANAE RepID=D1Z1I0_METPS (db=UNIREF evalue=1.6e-159 bit_score=568.2 identity=60.4 coverage=99.54648526077098)
GLNA_ATP (db=PatternScan db_id=PS00181 from=230 to=245 evalue=0.0 interpro_id=IPR008146 interpro_description=Glutamine synthetase, catalytic domain GO=Molecular Function: glutamate-ammonia ligase activity (GO:0004356), Biological Process: nitrogen compound metabolic process (GO:0006807))
AMDSBA4_1_4
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

3770..4246
DNA (477bp) protein (159aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Geobacillus sp. WCH70 RepID=C5D2C3_GEOSW (db=UNIREF evalue=2.2e-10 bit_score=71.2 identity=28.5 coverage=89.30817610062893)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
seg (db=Seg db_id=seg from=147 to=157)
AMDSBA4_1_5
Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5198..5305
DNA (108bp) protein (36aa)
5198..5305 + ( gc_cont=0.537)
AMDSBA4_1_6
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5343..6590
DNA (1248bp) protein (416aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.1 2.3.1.35)
Glutamate N-acetyltransferase/amino-acid acetyltransferase n=2 Tax=Peptoniphilus RepID=D1VRP9_9FIRM (db=UNIREF evalue=4.7e-81 bit_score=307.4 identity=41.9 coverage=94.95192307692307)
ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ (db=HMMPanther db_id=PTHR23100 from=33 to=415 evalue=1.9e-150 interpro_id=IPR002813 interpro_description=Arginine biosynthesis protein ArgJ GO=Molecular Function: glutamate N-acetyltransferase activity (GO:0004358), Biological Process: arginine biosynthetic process (GO:0006526))
AMDSBA4_1_7
Paenibacillus larvae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6594..7349
DNA (756bp) protein (252aa)
argB; acetylglutamate kinase ArgB (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CJ56_ROBBH (db=UNIREF evalue=2.3e-22 bit_score=111.7 identity=33.9 coverage=95.63492063492063)
argB: acetylglutamate kinase (db=HMMTigr db_id=TIGR00761 from=2 to=235 evalue=3.7e-62 interpro_id=IPR004662 interpro_description=Acetylglutamate kinase GO=Molecular Function: acetylglutamate kinase activity (GO:0003991), Cellular Component: cytoplasm (GO:0005737), Biological Process: arginine biosynthetic process (GO:0006526))
no description (db=Gene3D db_id=G3DSA:3.40.1160.10 from=2 to=249 evalue=1.4e-51 interpro_id=IPR001048 interpro_description=Aspartate/glutamate/uridylate kinase GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652))
AMDSBA4_1_8
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7351..8523
DNA (1173bp) protein (391aa)
argD; acetylornithine aminotransferase
Acetylornithine/succinyldiaminopimelate aminotransferase n=535 Tax=Enterobacteriaceae RepID=ARGD_ECO57 (db=UNIREF evalue=1.2e-59 bit_score=236.1 identity=35.6 coverage=94.37340153452686)
seg (db=Seg db_id=seg from=186 to=194)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=210 to=248 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA4_1_9
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8550..9764
DNA (1215bp) protein (405aa)
argininosuccinate synthase (EC:6.3.4.5)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=2 Tax=Brachyspira RepID=ASSY_BRAHW (db=UNIREF evalue=4.0e-109 bit_score=400.6 identity=51.0 coverage=96.54320987654322)
AMDSBA4_1_10
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9769..11175
DNA (1407bp) protein (469aa)
argH; argininosuccinate lyase (EC:4.3.2.1)
argH; argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Agrobacterium vitis S4 RepID=ARLY_AGRVS (db=UNIREF evalue=1.1e-115 bit_score=422.5 identity=48.3 coverage=94.88272921108742)
AMDSBA4_1_11
unknown

Not on your lists

comp(11452..11616)
DNA (165bp) protein (55aa)
11452..11616 - ( gc_cont=0.612)
AMDSBA4_1_12
unknown

Not on your lists

11821..12072
DNA (252bp) protein (84aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=5.0)
AMDSBA4_1_13
unknown

Not on your lists

12109..12390
DNA (282bp) protein (94aa)
12109..12390 + ( gc_cont=0.489)
AMDSBA4_1_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12623..12853)
DNA (231bp) protein (77aa)
small acid-soluble spore protein alpha/beta type
Small acid-soluble spore protein alpha/beta type n=2 Tax=Sulfobacillus acidophilus RepID=G8U197_9FIRM (db=UNIREF evalue=1.1e-20 bit_score=104.4 identity=70.8 coverage=89.6103896103896)
SASP_1 (db=PatternScan db_id=PS00304 from=20 to=29 evalue=0.0 interpro_id=IPR018126 interpro_description=Small acid-soluble spore protein, alpha/beta-type, conserved site GO=Molecular Function: double-stranded DNA binding (GO:0003690), Biological Process: DNA topological change (GO:0006265))
(db=HMMPfam db_id=PF00269 from=16 to=70 evalue=7.2e-17 interpro_id=IPR001448 interpro_description=Small acid-soluble spore protein, alpha/beta-type GO=Molecular Function: double-stranded DNA binding (GO:0003690), Biological Process: DNA topological change (GO:0006265))
AMDSBA4_1_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13065..13256
DNA (192bp) protein (64aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U196_9FIRM (db=UNIREF evalue=9.9e-15 bit_score=84.3 identity=64.5 coverage=95.3125)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6M3_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ39905.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA4_1_16
Acidianus hospitalis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

13264..13662
DNA (399bp) protein (133aa)
Nudix (db=superfamily db_id=SSF55811 from=2 to=122 evalue=6.4e-26 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=13 to=107 evalue=7.8e-21 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
MUTT/NUDIX HYDROLASE (db=HMMPanther db_id=PTHR22769 from=14 to=113 evalue=4.4e-15)
(db=HMMPfam db_id=PF00293 from=10 to=116 evalue=4.8e-15 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA4_1_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13659..14426
DNA (768bp) protein (256aa)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=48 to=243 evalue=1.2e-24 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR-like (db=superfamily db_id=SSF48452 from=64 to=242 evalue=7.2e-20)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=47 to=234 evalue=3.1e-10)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=6.0)
AMDSBA4_1_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

14416..15678
DNA (1263bp) protein (421aa)
HSR1-like GTP-binding protein
Small GTP-binding protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMU1_9FIRM (db=UNIREF evalue=2.0e-71 bit_score=275.4 identity=43.2 coverage=86.46080760095012)
seg (db=Seg db_id=seg from=149 to=158)
seg (db=Seg db_id=seg from=33 to=44)
AMDSBA4_1_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15773..17158
DNA (1386bp) protein (462aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB
tRNA-i(6)A37 thiotransferase enzyme MiaB
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=4 Tax=Bacillaceae RepID=MIAB_ANOFW (db=UNIREF evalue=3.3e-128 bit_score=464.2 identity=53.6 coverage=94.37229437229438)
AMDSBA4_1_20
unknown

Not on your lists

17193..17495
DNA (303bp) protein (101aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
AMDSBA4_1_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17530..18690)
DNA (1161bp) protein (387aa)
glycoside hydrolase family protein rbh
glycoside hydrolase family protein rbh
Putative glycosyl hydrolase n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y5E3_9FIRM (db=UNIREF evalue=1.0e-21 bit_score=110.2 identity=23.9 coverage=77.00258397932816)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=70 to=367 evalue=1.6e-39 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
AMDSBA4_1_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18823..19320
DNA (498bp) protein (166aa)
hypothetical protein (db=KEGG evalue=1.5e-09 bit_score=68.2 identity=26.8 coverage=90.96385542168674)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0V8_9FIRM (db=UNIREF evalue=1.9e-09 bit_score=68.2 identity=26.8 coverage=90.96385542168674)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
AMDSBA4_1_23
unknown

Not on your lists

comp(19891..20058)
DNA (168bp) protein (56aa)
19891..20058 - ( gc_cont=0.601)
AMDSBA4_1_24
unknown

Not on your lists

20156..20515
DNA (360bp) protein (120aa)
coiled-coil (db=Coil db_id=coil from=95 to=116 evalue=NA)
AMDSBA4_1_25
BJP_S1_SUB10_Methanoculleus_61_9, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20581..20838
DNA (258bp) protein (86aa)
HNH endonuclease domain protein
HNH endonuclease n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLF4_SPILD (db=UNIREF evalue=8.9e-11 bit_score=71.6 identity=41.7 coverage=96.51162790697676)
Tax=BJP_S1_SUB10_Methanoculleus_61_9
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IEP0_ANADE
AMDSBA4_1_26
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21292..23136
DNA (1845bp) protein (615aa)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=204 to=600 evalue=1.1e-34)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=439 to=612 evalue=2.0e-16)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=193 to=409 evalue=7.4e-09)
oligopeptide-binding protein OppA
AMDSBA4_1_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23332..24048
DNA (717bp) protein (239aa)
30S ribosomal protein S2 rbh
30S ribosomal protein S2 rbh
30S ribosomal protein S2, chloroplastic n=9 Tax=Cupressaceae RepID=RR2_CRYJA (db=UNIREF evalue=1.6e-46 bit_score=191.8 identity=42.2 coverage=92.88702928870293)
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=158 to=182 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA4_1_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24110..24736
DNA (627bp) protein (209aa)
translation elongation factor Ts (EF-Ts) rbh
Elongation factor Ts n=1 Tax=Methylobacillus flagellatus KT RepID=EFTS_METFK (db=UNIREF evalue=1.2e-16 bit_score=92.4 identity=33.2 coverage=81.3397129186603)
seg (db=Seg db_id=seg from=45 to=51)
coiled-coil (db=Coil db_id=coil from=18 to=39 evalue=NA)
AMDSBA4_1_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24809..25540
DNA (732bp) protein (244aa)
Uridylate kinase n=2 Tax=Synechococcus RepID=PYRH_SYNJA (db=UNIREF evalue=1.9e-82 bit_score=311.2 identity=65.2 coverage=94.67213114754098)
seg (db=Seg db_id=seg from=42 to=56)
pyrH_bact: UMP kinase (db=HMMTigr db_id=TIGR02075 from=7 to=238 evalue=2.0e-143 interpro_id=IPR015963 interpro_description=Uridylate kinase, bacteria GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: UMP kinase activity (GO:0033862))
AMDSBA4_1_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25533..26090
DNA (558bp) protein (186aa)
ribosome recycling factor
Ribosome-recycling factor n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L0Z6_9BACT (db=UNIREF evalue=9.2e-45 bit_score=185.7 identity=48.1 coverage=96.7741935483871)
coiled-coil (db=Coil db_id=coil from=114 to=139 evalue=NA)
coiled-coil (db=Coil db_id=coil from=160 to=181 evalue=NA)
Displaying items 1-30 of 180 in total

View Taxonomy