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AMDSBA4_9

Alias: AMDSBA4_C8

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Displaying items 1-30 of 92 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_9_1
Peregrinibacteria bacterium GW2011_GWC2_54_8, Peregrinibacteria, Bacteria

Not on your lists

comp(1..2157)
DNA (2157bp) protein (719aa)
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=59 to=73)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=176 to=444 evalue=4.9e-34)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=179 to=397 evalue=1.8e-17)
AMDSBA4_9_2
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2185..3054)
DNA (870bp) protein (290aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EHP3_BURCJ (db=UNIREF evalue=2.3e-50 bit_score=204.9 identity=39.6 coverage=94.82758620689656)
hypothetical protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
AMDSBA4_9_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3163..3570)
DNA (408bp) protein (136aa)
flagellar protein FliS
Flagellar protein FliS n=2 Tax=Sulfobacillus acidophilus RepID=G8TT25_9FIRM (db=UNIREF evalue=4.8e-27 bit_score=126.3 identity=46.4 coverage=96.32352941176471)
Flagellar export chaperone FliS (db=superfamily db_id=SSF101116 from=3 to=124 evalue=1.2e-12 interpro_id=IPR003713 interpro_description=Flagellar protein FliS GO=Cellular Component: bacterial-type flagellum (GO:0009288), Biological Process: flagellum assembly (GO:0009296))
(db=HMMPfam db_id=PF02561 from=5 to=111 evalue=2.5e-09 interpro_id=IPR003713 interpro_description=Flagellar protein FliS GO=Cellular Component: bacterial-type flagellum (GO:0009288), Biological Process: flagellum assembly (GO:0009296))
AMDSBA4_9_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3576..5072)
DNA (1497bp) protein (499aa)
Flagellar hook-associated 2 domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT26_9FIRM (db=UNIREF evalue=6.0e-99 bit_score=367.1 identity=42.2 coverage=97.79559118236473)
flagellar hook-associated 2 domain-containing protein rbh
flagellar hook-associated 2 domain-containing protein rbh
seg (db=Seg db_id=seg from=486 to=498)
AMDSBA4_9_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5148..6293)
DNA (1146bp) protein (382aa)
flagellin domain-containing protein
flagellin domain-containing protein
Flagellin domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT27_9FIRM (db=UNIREF evalue=2.7e-107 bit_score=394.4 identity=55.8 coverage=99.47643979057592)
seg (db=Seg db_id=seg from=211 to=220)
AMDSBA4_9_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6750..7559)
DNA (810bp) protein (270aa)
dTDP-4-dehydrorhamnose reductase
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=258 evalue=1.6e-68)
(db=HMMPfam db_id=PF04321 from=1 to=262 evalue=9.4e-66 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
DTDP-DEHYDRORHAMNOSE DEHYDROGENASE (db=HMMPanther db_id=PTHR10491 from=1 to=261 evalue=2.0e-56)
AMDSBA4_9_7
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7701..8030)
DNA (330bp) protein (110aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT35_9FIRM (db=UNIREF evalue=1.9e-21 bit_score=107.5 identity=50.5 coverage=95.45454545454545)
Nitrogenase accessory factor-like (db=superfamily db_id=SSF53146 from=1 to=108 evalue=5.2e-13 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
(db=HMMPfam db_id=PF02579 from=10 to=108 evalue=3.4e-08 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
AMDSBA4_9_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8050..8997)
DNA (948bp) protein (316aa)
beta-lactamase
beta-lactamase
Beta-lactamase domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT36_9FIRM (db=UNIREF evalue=2.7e-89 bit_score=334.3 identity=51.4 coverage=98.41772151898735)
AMDSBA4_9_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9108..9479
DNA (372bp) protein (124aa)
hypothetical protein (db=KEGG evalue=8.4e-10 bit_score=68.6 identity=35.6 coverage=89.51612903225806)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWF3_9FIRM (db=UNIREF evalue=1.1e-09 bit_score=68.6 identity=35.6 coverage=89.51612903225806)
AMDSBA4_9_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9622..11346)
DNA (1725bp) protein (575aa)
ErfK/YbiS/YcfS/YnhG family protein
Putative uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DME1_9BACL (db=UNIREF evalue=1.9e-32 bit_score=146.4 identity=35.2 coverage=40.0)
seg (db=Seg db_id=seg from=562 to=574)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
AMDSBA4_9_11
unknown

Not on your lists

comp(11405..11554)
DNA (150bp) protein (50aa)
11405..11554 - ( gc_cont=0.473)
AMDSBA4_9_12
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11529..12848)
DNA (1320bp) protein (440aa)
PAS/PAC sensor-containing diguanylate cyclase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative n=3 Tax=Acaryochloris RepID=B0C8G1_ACAM1 (db=UNIREF evalue=4.7e-39 bit_score=167.9 identity=36.7 coverage=57.95454545454546)
PYP-like sensor domain (PAS domain) (db=superfamily db_id=SSF55785 from=157 to=260 evalue=6.2e-30)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=270 to=436 evalue=1.3e-42 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
AMDSBA4_9_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13126..14871
DNA (1746bp) protein (582aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=2.9e-177 bit_score=627.5 identity=52.4 coverage=99.65635738831615)
seg (db=Seg db_id=seg from=525 to=539)
seg (db=Seg db_id=seg from=488 to=502)
AMDSBA4_9_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15169..16557)
DNA (1389bp) protein (463aa)
major facilitator superfamily protein
Drug resistance transporter, EmrB/QacA subfamily protein n=1 Tax=Streptomyces bingchenggensis BCW-1 RepID=D7BZB9_STRBB (db=UNIREF evalue=9.3e-22 bit_score=110.5 identity=24.7 coverage=95.8963282937365)
seg (db=Seg db_id=seg from=436 to=448)
transmembrane_regions (db=TMHMM db_id=tmhmm from=292 to=314)
AMDSBA4_9_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16554..17147)
DNA (594bp) protein (198aa)
HTH_TETR_1 (db=PatternScan db_id=PS01081 from=28 to=58 evalue=0.0 interpro_id=IPR023772 interpro_description=DNA-binding HTH domain, TetR-type, conserved site)
Homeodomain-like (db=superfamily db_id=SSF46689 from=5 to=78 evalue=1.8e-18 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
(db=HMMPfam db_id=PF00440 from=16 to=59 evalue=3.3e-16 interpro_id=IPR001647 interpro_description=DNA-binding HTH domain, TetR-type GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.10.60 from=5 to=62 evalue=4.0e-12 interpro_id=IPR012287 interpro_description=Homeodomain-related GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA4_9_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17461..19842)
DNA (2382bp) protein (794aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
ABC transporter-related protein n=2 Tax=Geobacillus RepID=B4BRU9_9BACI (db=UNIREF evalue=2.4e-78 bit_score=299.3 identity=39.8 coverage=58.18639798488665)
transmembrane_regions (db=TMHMM db_id=tmhmm from=643 to=665)
transmembrane_regions (db=TMHMM db_id=tmhmm from=604 to=623)
AMDSBA4_9_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19839..20408)
DNA (570bp) protein (190aa)
thiamin ABC transporter permease
YkoE n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YGN6_EXIS2 (db=UNIREF evalue=2.2e-33 bit_score=147.9 identity=37.9 coverage=95.26315789473684)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=92)
transmembrane_regions (db=TMHMM db_id=tmhmm from=141 to=163)
AMDSBA4_9_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20661..21596)
DNA (936bp) protein (312aa)
family 2 glycosyl transferase rbh
family 2 glycosyl transferase rbh
Glycosyl transferase family 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TSV4_9FIRM (db=UNIREF evalue=6.0e-81 bit_score=306.6 identity=51.3 coverage=96.47435897435898)
seg (db=Seg db_id=seg from=71 to=86)
AMDSBA4_9_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21593..22651)
DNA (1059bp) protein (353aa)
group 1 glycosyl transferase
Glycosyl transferase group 1 n=2 Tax=Sulfobacillus acidophilus RepID=G8TSV5_9FIRM (db=UNIREF evalue=2.3e-68 bit_score=265.0 identity=43.2 coverage=97.16713881019831)
seg (db=Seg db_id=seg from=123 to=132)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=22 to=350 evalue=9.5e-58)
AMDSBA4_9_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22648..23760)
DNA (1113bp) protein (371aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IVQ0_9PORP (db=UNIREF evalue=2.2e-34 bit_score=152.1 identity=28.8 coverage=91.91374663072777)
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=4 to=370 evalue=2.4e-55)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=4 to=370 evalue=2.4e-55)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=5 to=367 evalue=2.6e-55)
AMDSBA4_9_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23757..24959)
DNA (1203bp) protein (401aa)
teichoic-acid-transporting AtPase (EC:3.6.3.40)
O-antigen export system ATP-binding protein RfbB n=2 Tax=Myxococcus xanthus RepID=RFBB_MYXXA (db=UNIREF evalue=1.2e-62 bit_score=246.1 identity=35.5 coverage=99.50124688279301)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=4 to=292 evalue=1.5e-97)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=152 to=166 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA4_9_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24960..25796)
DNA (837bp) protein (279aa)
ABC transporter
ABC transporter
ABC-2 type transporter n=2 Tax=Sulfobacillus acidophilus RepID=G8TU57_9FIRM (db=UNIREF evalue=7.2e-94 bit_score=349.4 identity=63.9 coverage=91.39784946236558)
seg (db=Seg db_id=seg from=63 to=74)
AMDSBA4_9_23
unknown

Not on your lists

comp(25844..26440)
DNA (597bp) protein (199aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=62)
(db=HMMPfam db_id=PF09852 from=14 to=183 evalue=1.6e-05 interpro_id=IPR018650 interpro_description=Sulfolobus virus STSV1, Orf64)
AMDSBA4_9_24
Leptolyngbya sp. PCC 7376, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(26400..27218)
DNA (819bp) protein (273aa)
seg (db=Seg db_id=seg from=161 to=172)
seg (db=Seg db_id=seg from=110 to=122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=221 to=243)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
AMDSBA4_9_25
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27382..28773
DNA (1392bp) protein (464aa)
glycosyl transferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=213 evalue=1.9e-46)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=246 evalue=3.8e-42)
(db=HMMPfam db_id=PF00535 from=7 to=126 evalue=2.2e-30 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
AMDSBA4_9_26
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

28834..30453
DNA (1620bp) protein (540aa)
group 1 glycosyl transferase
Glycosyl transferase, group 1 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZL4_HALHL (db=UNIREF evalue=1.5e-07 bit_score=63.5 identity=22.1 coverage=45.370370370370374)
seg (db=Seg db_id=seg from=334 to=352)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=170 to=529 evalue=2.9e-55)
AMDSBA4_9_27
Ferroplasma sp. Type II, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

30509..31735
DNA (1227bp) protein (409aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=309 to=328)
transmembrane_regions (db=TMHMM db_id=tmhmm from=341 to=363)
transmembrane_regions (db=TMHMM db_id=tmhmm from=373 to=392)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
AMDSBA4_9_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32001..33113
DNA (1113bp) protein (371aa)
RuBisCo, C-terminal domain (db=superfamily db_id=SSF51649 from=106 to=362 evalue=2.8e-56 interpro_id=IPR000685 interpro_description=Ribulose bisphosphate carboxylase, large subunit, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
no description (db=Gene3D db_id=G3DSA:3.20.20.110 from=105 to=362 evalue=8.8e-50 interpro_id=IPR000685 interpro_description=Ribulose bisphosphate carboxylase, large subunit, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
RuBisCO, large subunit, small (N-terminal) domain (db=superfamily db_id=SSF54966 from=1 to=106 evalue=2.1e-14 interpro_id=IPR017443 interpro_description=Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO=Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
belongs to YkrW family of RubisCO (from IV) Nicholas Justice (1/17/13)
AMDSBA4_9_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33172..34356
DNA (1185bp) protein (395aa)
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
Aminotransferase class I and II n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L3K6_9BACI (db=UNIREF evalue=5.9e-110 bit_score=403.3 identity=52.3 coverage=95.9493670886076)
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=60 to=394 evalue=2.3e-139)
AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751:SF33 from=60 to=394 evalue=2.3e-139)
AMDSBA4_9_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34420..34683
DNA (264bp) protein (88aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7Y6_SULAT (db=UNIREF evalue=8.5e-17 bit_score=91.7 identity=50.7 coverage=84.0909090909091)
seg (db=Seg db_id=seg from=4 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=75)
Displaying items 1-30 of 92 in total

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