ggKbase home page

AMDSBA4_10

Alias: AMDSBA4_C9

Search features with annotation key words

Displaying items 1-30 of 91 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_10_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(112..729)
DNA (618bp) protein (206aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TYL7_9FIRM (db=UNIREF evalue=2.2e-31 bit_score=141.4 identity=37.1 coverage=99.02912621359224)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I9U7_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ39019.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA4_10_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(846..1352)
DNA (507bp) protein (169aa)
30S ribosomal protein S30P
SSU ribosomal protein S30P n=2 Tax=Sulfobacillus acidophilus RepID=G8TYL8_9FIRM (db=UNIREF evalue=2.8e-56 bit_score=223.8 identity=67.1 coverage=98.81656804733728)
Ribosome binding protein Y (YfiA homologue) (db=superfamily db_id=SSF69754 from=2 to=114 evalue=2.3e-30 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
no description (db=Gene3D db_id=G3DSA:3.30.160.100 from=1 to=108 evalue=3.6e-29 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
AMDSBA4_10_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1483..1680)
DNA (198bp) protein (66aa)
cspA; cold-shock DNA-binding domain-containing protein
Cold shock-like protein CspLA n=66 Tax=Bacilli RepID=CSPA_LISIN (db=UNIREF evalue=8.9e-19 bit_score=97.8 identity=69.4 coverage=92.42424242424242)
COLD_SHOCK (db=PatternScan db_id=PS00352 from=14 to=32 evalue=0.0 interpro_id=IPR019844 interpro_description=Cold-shock conserved site)
COLD SHOCK DOMAIN CONTAINING PROTEINS (db=HMMPanther db_id=PTHR11544 from=1 to=63 evalue=2.9e-36)
AMDSBA4_10_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1934..3568)
DNA (1635bp) protein (545aa)
diguanylate cyclase
Diguanylate cyclase n=2 Tax=Leptospirillum sp. Group II RepID=A3ERH0_9BACT (db=UNIREF evalue=3.8e-22 bit_score=112.1 identity=36.6 coverage=33.57798165137615)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=119)
AMDSBA4_10_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3636..4103)
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TYM1_9FIRM (db=UNIREF evalue=8.9e-25 bit_score=119.0 identity=36.4 coverage=95.51282051282051)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
seg (db=Seg db_id=seg from=5 to=16)
AMDSBA4_10_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4161..5360)
DNA (1200bp) protein (400aa)
S-adenosylmethionine synthase (EC:2.5.1.6)
S-adenosylmethionine synthase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=METK_AKKM8 (db=UNIREF evalue=6.9e-106 bit_score=389.8 identity=51.9 coverage=95.75)
AMDSBA4_10_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5668..6015)
DNA (348bp) protein (116aa)
sporulation transcriptional regulator SpoIIID
Stage III sporulation protein D n=35 Tax=Bacillus RepID=SP3D_BACSU (db=UNIREF evalue=2.7e-18 bit_score=97.1 identity=55.3 coverage=72.41379310344827)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=38 to=71 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
spore_III_D: sporulation transcriptional (db=HMMTigr db_id=TIGR02844 from=32 to=111 evalue=2.8e-45 interpro_id=IPR014208 interpro_description=Sporulation stage III, transcriptional regulator SpoIIID)
AMDSBA4_10_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6042..6626)
DNA (585bp) protein (195aa)
spoIIQ; peptidase M23
Peptidase, M23 family n=2 Tax=Megasphaera RepID=D3LVP6_9FIRM (db=UNIREF evalue=8.2e-12 bit_score=76.3 identity=30.6 coverage=72.3076923076923)
seg (db=Seg db_id=seg from=32 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA4_10_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6724..7431)
DNA (708bp) protein (236aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ16_9FIRM (db=UNIREF evalue=1.2e-52 bit_score=212.2 identity=47.2 coverage=97.45762711864407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=4 to=25)
AMDSBA4_10_10
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7714..8241)
DNA (528bp) protein (176aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0JVJ5_9BACT (db=UNIREF evalue=4.3e-44 bit_score=183.3 identity=56.2 coverage=89.20454545454545)
GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED (db=HMMPanther db_id=PTHR11106 from=8 to=161 evalue=4.4e-72)
Macro domain-like (db=superfamily db_id=SSF52949 from=1 to=166 evalue=4.6e-68)
AMDSBA4_10_11
unknown

Not on your lists

comp(8267..8608)
DNA (342bp) protein (114aa)
seg (db=Seg db_id=seg from=2 to=16)
AMDSBA4_10_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8866..9291)
DNA (426bp) protein (142aa)
ATP synthase subunit epsilon
ATP synthase epsilon chain, chloroplastic n=1 Tax=Cyanidioschyzon merolae RepID=ATPE_CYAME (db=UNIREF evalue=4.0e-08 bit_score=63.5 identity=30.7 coverage=81.69014084507043)
coiled-coil (db=Coil db_id=coil from=114 to=135 evalue=NA)
seg (db=Seg db_id=seg from=91 to=103)
AMDSBA4_10_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9307..10743)
DNA (1437bp) protein (479aa)
ATP synthase F1 subcomplex subunit beta
ATP synthase F1 subcomplex subunit beta
ATP synthase subunit beta, chloroplastic n=5 Tax=Viridiplantae RepID=ATPB_CHAVU (db=UNIREF evalue=7.3e-179 bit_score=632.5 identity=66.8 coverage=98.12108559498957)
AMDSBA4_10_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10755..11702)
DNA (948bp) protein (316aa)
atpG; ATP synthase F1 subunit gamma
ATP synthase gamma chain n=3 Tax=Bacillus RepID=ATPG_BACP2 (db=UNIREF evalue=6.4e-30 bit_score=137.1 identity=34.9 coverage=58.86075949367089)
seg (db=Seg db_id=seg from=284 to=296)
seg (db=Seg db_id=seg from=198 to=216)
AMDSBA4_10_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11703..13211)
DNA (1509bp) protein (503aa)
atpA; ATP synthase F1 subunit alpha
atpA; ATP synthase F1 subunit alpha
ATP synthase subunit alpha 1 n=4 Tax=Legionella pneumophila RepID=ATPA1_LEGPA (db=UNIREF evalue=2.6e-110 bit_score=404.8 identity=44.6 coverage=93.24055666003976)
AMDSBA4_10_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13201..13770)
DNA (570bp) protein (190aa)
atpH; ATP synthase F1 subunit beta
ATP synthase subunit delta, chloroplastic n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=ATPD_PHATC (db=UNIREF evalue=6.6e-14 bit_score=83.2 identity=26.6 coverage=91.57894736842105)
(db=HMMPfam db_id=PF00213 from=7 to=177 evalue=5.3e-49 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
ATP_synt_delta: ATP synthase F1, delta (db=HMMTigr db_id=TIGR01145 from=7 to=177 evalue=1.4e-41 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
AMDSBA4_10_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13767..14261)
DNA (495bp) protein (165aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=34 to=76 evalue=NA)
(db=HMMPfam db_id=PF00430 from=11 to=140 evalue=1.2e-27 interpro_id=IPR002146 interpro_description=ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO=Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263))
ATP_synt_b: ATP synthase F0, B subunit (db=HMMTigr db_id=TIGR01144 from=14 to=160 evalue=5.5e-26 interpro_id=IPR005864 interpro_description=ATPase, F0 complex, subunit B, bacterial GO=Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263))
AMDSBA4_10_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14304..14531)
DNA (228bp) protein (76aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
seg (db=Seg db_id=seg from=8 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ATPASE_C (db=PatternScan db_id=PS00605 from=38 to=59 evalue=0.0 interpro_id=IPR020537 interpro_description=ATPase, F0 complex, subunit C, DCCD-binding site)
AMDSBA4_10_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14593..15285)
DNA (693bp) protein (231aa)
ATP synthase F0 subcomplex subunit A
ATP synthase subunit a 2 n=1 Tax=Pelobacter propionicus DSM 2379 RepID=ATP62_PELPD (db=UNIREF evalue=8.2e-11 bit_score=73.2 identity=29.8 coverage=80.95238095238095)
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=165 to=187)
AMDSBA4_10_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15282..15662)
DNA (381bp) protein (127aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ26_9FIRM (db=UNIREF evalue=1.4e-33 bit_score=147.9 identity=54.0 coverage=96.8503937007874)
seg (db=Seg db_id=seg from=11 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=116)
AMDSBA4_10_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15659..15892)
DNA (234bp) protein (78aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ27_9FIRM (db=UNIREF evalue=6.4e-16 bit_score=88.6 identity=52.1 coverage=88.46153846153845)
seg (db=Seg db_id=seg from=55 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
AMDSBA4_10_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16318..16938)
DNA (621bp) protein (207aa)
uracil phosphoribosyltransferase
Uracil phosphoribosyltransferase n=10 Tax=Rhizobium/Agrobacterium group RepID=UPP_AGRRK (db=UNIREF evalue=9.5e-51 bit_score=205.7 identity=47.8 coverage=98.06763285024155)
seg (db=Seg db_id=seg from=42 to=53)
upp: uracil phosphoribosyltransferase (db=HMMTigr db_id=TIGR01091 from=1 to=206 evalue=1.6e-98 interpro_id=IPR005765 interpro_description=Uracil phosphoribosyl transferase GO=Molecular Function: uracil phosphoribosyltransferase activity (GO:0004845), Biological Process: uracil salvage (GO:0006223))
AMDSBA4_10_23
Planomicrobium glaciei, Planomicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16978..17535)
DNA (558bp) protein (186aa)
hypothetical protein
UPF0340 protein SMU_87 n=3 Tax=Streptococcus mutans RepID=Y087_STRMU (db=UNIREF evalue=1.7e-27 bit_score=128.3 identity=45.8 coverage=81.18279569892472)
seg (db=Seg db_id=seg from=6 to=16)
seg (db=Seg db_id=seg from=51 to=64)
AMDSBA4_10_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17525..17977)
DNA (453bp) protein (151aa)
rpiB; RpiB/LacA/LacB family sugar-phosphate isomerase
Ribose-5-phosphate isomerase B, putative n=2 Tax=Entamoeba RepID=B0E8R5_ENTDS (db=UNIREF evalue=2.9e-33 bit_score=147.1 identity=46.3 coverage=96.02649006622516)
Sugar-phosphate isomerase, RpiB/LacA/LacB types (db=HMMPIR db_id=PIRSF005384 from=1 to=147 evalue=5.2e-79 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
rpiB_lacA_lacB: sugar-phosphate isomer (db=HMMTigr db_id=TIGR00689 from=3 to=146 evalue=1.8e-68 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA4_10_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17981..18394)
DNA (414bp) protein (138aa)
protein tyrosine phosphatase
Protein tyrosine phosphatase n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ30_9FIRM (db=UNIREF evalue=2.7e-25 bit_score=120.6 identity=47.2 coverage=89.85507246376811)
seg (db=Seg db_id=seg from=26 to=37)
Phosphotyrosine protein phosphatases I (db=superfamily db_id=SSF52788 from=1 to=125 evalue=1.9e-16 interpro_id=IPR023485 interpro_description=Phosphotyrosine protein phosphatase I superfamily)
AMDSBA4_10_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18447..19457)
DNA (1011bp) protein (337aa)
translation factor SUA5
Sua5 family protein n=1 Tax=Thermoproteus uzoniensis 768-20 RepID=F2L4I3_THEU7 (db=UNIREF evalue=9.4e-64 bit_score=249.6 identity=44.1 coverage=94.95548961424333)
seg (db=Seg db_id=seg from=316 to=327)
Translation factor, SUA5 type (db=HMMPIR db_id=PIRSF004930 from=1 to=333 evalue=7.7e-138 interpro_id=IPR010923 interpro_description=Translation factor, SUA5 type)
AMDSBA4_10_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19470..20741)
DNA (1272bp) protein (424aa)
putative tyrosine transporter P-protein
putative tyrosine transporter P-protein
Citrate transporter n=2 Tax=Sulfobacillus acidophilus RepID=F8I9S2_SULAT (db=UNIREF evalue=3.7e-110 bit_score=404.1 identity=53.1 coverage=96.93396226415094)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
AMDSBA4_10_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20748..21050)
DNA (303bp) protein (101aa)
rhodanese-like protein
Rhodanese-like protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ33_9FIRM (db=UNIREF evalue=2.4e-23 bit_score=113.6 identity=54.3 coverage=91.0891089108911)
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=1 to=96 evalue=1.3e-23 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=Gene3D db_id=G3DSA:3.40.250.10 from=2 to=99 evalue=1.9e-17 interpro_id=IPR001763 interpro_description=Rhodanese-like)
AMDSBA4_10_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21053..21889)
DNA (837bp) protein (279aa)
hemK; HemK family modification methylase
Release factor glutamine methyltransferase n=4 Tax=Thermotoga RepID=PRMC_THEMA (db=UNIREF evalue=3.5e-24 bit_score=117.9 identity=30.4 coverage=74.91039426523297)
seg (db=Seg db_id=seg from=147 to=161)
RF_mod_PrmC: protein-(glutamine-N5) methy (db=HMMTigr db_id=TIGR03534 from=25 to=273 evalue=6.6e-79 interpro_id=IPR019874 interpro_description=Protein-(glutamine-N5) methyltransferase, release factor-specific GO=Molecular Function: methyltransferase activity (GO:0008168))
AMDSBA4_10_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21886..23025)
DNA (1140bp) protein (380aa)
prfA; peptide chain release factor RF1
Peptide chain release factor 1 n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=RF1_AKKM8 (db=UNIREF evalue=2.5e-89 bit_score=334.7 identity=48.9 coverage=92.10526315789474)
seg (db=Seg db_id=seg from=139 to=151)
Displaying items 1-30 of 91 in total

View Taxonomy