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AMDSBA4_24

Alias: AMDSBA4_C23

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_24_1
unknown

Not on your lists

comp(1..252)
DNA (252bp) protein (84aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=14 to=27)
seg (db=Seg db_id=seg from=67 to=74)
AMDSBA4_24_2
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(258..779)
DNA (522bp) protein (174aa)
seg (db=Seg db_id=seg from=10 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=66 to=84 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=6 to=164 evalue=2.1e-26 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBA4_24_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(779..1492)
DNA (714bp) protein (238aa)
cytochrome c biogenesis protein transmembrane region
Cytochrome c-type biogenesis protein CcdA n=9 Tax=Bacillus RepID=CCDA_BACSU (db=UNIREF evalue=2.5e-31 bit_score=141.4 identity=36.1 coverage=92.43697478991596)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=56 to=78)
AMDSBA4_24_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1632..2318
DNA (687bp) protein (229aa)
cell division ATP-binding protein FtsE (EC:3.6.3.28)
Cell division ATP-binding protein FtsE n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RHJ9_9RHOO (db=UNIREF evalue=2.1e-38 bit_score=164.9 identity=41.9 coverage=93.44978165938865)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=223 evalue=5.6e-115)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=138 to=152 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA4_24_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2302..3195
DNA (894bp) protein (298aa)
hypothetical protein
hypothetical protein
Cell division ABC transporter, permease protein FtsX n=2 Tax=Sulfobacillus acidophilus RepID=F8I9W2_SULAT (db=UNIREF evalue=4.1e-103 bit_score=380.2 identity=61.0 coverage=98.65771812080537)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
AMDSBA4_24_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3270..4460
DNA (1191bp) protein (397aa)
carboxyl-terminal protease rbh
carboxyl-terminal protease rbh
Carboxyl-terminal protease n=2 Tax=Sulfobacillus acidophilus RepID=G8TYJ8_9FIRM (db=UNIREF evalue=2.3e-125 bit_score=454.5 identity=59.4 coverage=96.4735516372796)
AMDSBA4_24_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4479..6488
DNA (2010bp) protein (670aa)
excinuclease ABC subunit B
excinuclease ABC subunit B
UvrABC system protein B n=4 Tax=Acinetobacter RepID=UVRB_ACIAD (db=UNIREF evalue=1.4e-212 bit_score=745.0 identity=57.6 coverage=97.01492537313433)
AMDSBA4_24_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6481..9324
DNA (2844bp) protein (948aa)
excinuclease ABC subunit A
excinuclease ABC subunit A
Excinuclease ABC subunit A n=4 Tax=Photobacterium RepID=D0Z1S0_LISDA (db=UNIREF evalue=0.0 bit_score=1052.7 identity=56.3 coverage=97.8902953586498)
AMDSBA4_24_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9348..11228
DNA (1881bp) protein (627aa)
excinuclease ABC subunit C rbh
excinuclease ABC subunit C rbh
UvrABC system protein C n=2 Tax=Acidaminococcus RepID=C0WCG7_9FIRM (db=UNIREF evalue=3.9e-140 bit_score=504.2 identity=41.7 coverage=96.01275917065391)
AMDSBA4_24_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11229..11570
DNA (342bp) protein (114aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YM64_LYNSP (db=UNIREF evalue=3.0e-14 bit_score=83.6 identity=43.1 coverage=78.0701754385965)
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=25)
seg (db=Seg db_id=seg from=95 to=105)
AMDSBA4_24_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11549..12370
DNA (822bp) protein (274aa)
seg (db=Seg db_id=seg from=241 to=256)
COF_2 (db=PatternScan db_id=PS01229 from=220 to=242 evalue=0.0 interpro_id=IPR000150 interpro_description=Cof protein GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity (GO:0016787))
HAD-like (db=superfamily db_id=SSF56784 from=6 to=273 evalue=5.2e-56 interpro_id=IPR023214 interpro_description=HAD-like domain)
(db=HMMPfam db_id=PF08282 from=10 to=266 evalue=1.6e-54 interpro_id=IPR013200 interpro_description=HAD superfamily hydrolase-like, type 3)
AMDSBA4_24_12
unknown

Not on your lists

comp(12367..12606)
DNA (240bp) protein (80aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
AMDSBA4_24_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12771..13649
DNA (879bp) protein (293aa)
hypothetical protein
UPF0042 nucleotide-binding protein Daro_0070 n=2 Tax=Dechloromonas aromatica RCB RepID=Y070_DECAR (db=UNIREF evalue=1.9e-44 bit_score=185.3 identity=39.4 coverage=94.19795221843003)
Predicted P-loop kinase, YhbJ type (db=HMMPIR db_id=PIRSF005052 from=1 to=290 evalue=8.9e-132 interpro_id=IPR005337 interpro_description=ATPase, P-loop-containing GO=Molecular Function: ATP binding (GO:0005524))
(db=HMMPfam db_id=PF03668 from=6 to=287 evalue=9.9e-99 interpro_id=IPR005337 interpro_description=ATPase, P-loop-containing GO=Molecular Function: ATP binding (GO:0005524))
AMDSBA4_24_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13651..14961
DNA (1311bp) protein (437aa)
hypothetical protein
hypothetical protein
Uncharacterized protein n=5 Tax=Thermus RepID=H7GJ07_9DEIN (db=UNIREF evalue=9.9e-82 bit_score=309.7 identity=44.0 coverage=89.93135011441647)
seg (db=Seg db_id=seg from=121 to=134)
AMDSBA4_24_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15015..15752
DNA (738bp) protein (246aa)
sporulation regulator WhiA
Putative sporulation transcription regulator WhiA n=11 Tax=Streptococcus agalactiae RepID=WHIA_STRA1 (db=UNIREF evalue=2.9e-14 bit_score=84.7 identity=30.6 coverage=71.13821138211382)
(db=HMMPfam db_id=PF02650 from=65 to=242 evalue=5.3e-46 interpro_id=IPR023054 interpro_description=Sporulation regulator WhiA, C-terminal)
Putative sporulation transcription regulator WhiA {ECO:0000256|SAAS:SAAS00015186}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sul
AMDSBA4_24_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15906..16256
DNA (351bp) protein (117aa)
NADH dehydrogenase subunit A (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TYI8_9FIRM (db=UNIREF evalue=4.4e-45 bit_score=186.0 identity=74.6 coverage=96.58119658119658)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=108)
AMDSBA4_24_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16247..16792
DNA (546bp) protein (182aa)
NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit 6 n=9 Tax=Thermaceae RepID=NQO6_THET8 (db=UNIREF evalue=6.0e-57 bit_score=226.1 identity=68.7 coverage=80.21978021978022)
seg (db=Seg db_id=seg from=122 to=138)
COMPLEX1_20K (db=PatternScan db_id=PS01150 from=122 to=138 evalue=0.0 interpro_id=IPR006138 interpro_description=NADH-ubiquinone oxidoreductase, 20 Kd subunit GO=Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137), Molecular Function: quinone binding (GO:0048038), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_24_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16779..17240
DNA (462bp) protein (154aa)
NADH-quinone oxidoreductase subunit C n=2 Tax=Sulfobacillus acidophilus RepID=G8TYI6_9FIRM (db=UNIREF evalue=1.3e-55 bit_score=221.5 identity=64.7 coverage=98.7012987012987)
NADH dehydrogenase subunit C (EC:1.6.5.3)
NuoC_fam: NADH (or F420H2) dehydrogenase, su (db=HMMTigr db_id=TIGR01961 from=29 to=149 evalue=6.1e-52 interpro_id=IPR010218 interpro_description=NADH dehydrogenase, subunit C GO=Molecular Function: oxidoreductase activity, acting on NADH or NADPH (GO:0016651), Biological Process: oxidation-reduction process (GO:0055114))
Nqo5-like (db=superfamily db_id=SSF143243 from=6 to=149 evalue=6.1e-42)
AMDSBA4_24_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17252..18451
DNA (1200bp) protein (400aa)
nuoD; NADH dehydrogenase I subunit D
nuoD; NADH dehydrogenase I subunit D
NADH-quinone oxidoreductase subunit D n=4 Tax=Campylobacterales RepID=NUOD_SULDN (db=UNIREF evalue=2.1e-86 bit_score=325.1 identity=40.5 coverage=97.0)
AMDSBA4_24_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18448..18915
DNA (468bp) protein (156aa)
NADH dehydrogenase subunit E (EC:1.6.5.3)
NADH dehydrogenase subunit E n=2 Tax=Sulfobacillus acidophilus RepID=G8TYI4_9FIRM (db=UNIREF evalue=3.7e-63 bit_score=246.5 identity=76.9 coverage=98.71794871794873)
nuoE_fam: NADH-quinone oxidoreductase, E sub (db=HMMTigr db_id=TIGR01958 from=8 to=153 evalue=5.1e-51 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF01257 from=10 to=150 evalue=2.3e-47 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_24_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18912..20204
DNA (1293bp) protein (431aa)
NADH dehydrogenase subunit F (EC:1.6.5.3)
NADH dehydrogenase subunit F (EC:1.6.5.3)
NADH dehydrogenase subunit F n=2 Tax=Sulfobacillus acidophilus RepID=G8TYI3_9FIRM (db=UNIREF evalue=3.5e-204 bit_score=716.5 identity=79.2 coverage=98.83990719257541)
NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) (db=HMMPanther db_id=PTHR11780 from=15 to=419 evalue=2.3e-211)
AMDSBA4_24_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20185..22497
DNA (2313bp) protein (771aa)
NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH dehydrogenase subunit G n=2 Tax=Sulfobacillus acidophilus RepID=G8TYI2_9FIRM (db=UNIREF evalue=4.1e-272 bit_score=943.0 identity=59.0 coverage=99.74059662775616)
seg (db=Seg db_id=seg from=282 to=295)
AMDSBA4_24_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22494..23480
DNA (987bp) protein (329aa)
NADH dehydrogenase subunit H (EC:1.6.5.3)
NADH dehydrogenase subunit H (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit H 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TYI1_9FIRM (db=UNIREF evalue=3.4e-151 bit_score=540.0 identity=80.1 coverage=98.78419452887537)
transmembrane_regions (db=TMHMM db_id=tmhmm from=271 to=293)
AMDSBA4_24_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23508..23945
DNA (438bp) protein (146aa)
nuoI; NADH dehydrogenase I subunit I
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=100 to=111 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=55 to=66 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
NuoI: NADH-quinone oxidoreductase, chain I (db=HMMTigr db_id=TIGR01971 from=11 to=138 evalue=1.9e-48 interpro_id=IPR010226 interpro_description=NADH-quinone oxidoreductase, chain I GO=Cellular Component: membrane (GO:0016020), Molecular Function: oxidoreductase activity, acting on NADH or NADPH (GO:0016651), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_24_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23959..24489
DNA (531bp) protein (177aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
NuoJ2 NADH:quinone oxidoreductase subunit 6 (Chain J) n=7 Tax=Sinorhizobium RepID=H0FW37_RHIML (db=UNIREF evalue=1.8e-13 bit_score=81.6 identity=35.0 coverage=88.13559322033898)
seg (db=Seg db_id=seg from=93 to=109)
seg (db=Seg db_id=seg from=76 to=88)
AMDSBA4_24_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24486..24788
DNA (303bp) protein (101aa)
NADH dehydrogenase subunit K (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit K n=2 Tax=Sulfobacillus acidophilus RepID=G8TYH8_9FIRM (db=UNIREF evalue=5.0e-37 bit_score=159.1 identity=74.7 coverage=97.02970297029702)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
seg (db=Seg db_id=seg from=7 to=22)
AMDSBA4_24_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24825..26693
DNA (1869bp) protein (623aa)
NADH dehydrogenase subunit L (EC:1.6.5.3)
NADH dehydrogenase subunit L n=2 Tax=Sulfobacillus acidophilus RepID=G8TYH7_9FIRM (db=UNIREF evalue=3.3e-272 bit_score=943.0 identity=74.6 coverage=99.67897271268058)
transmembrane_regions (db=TMHMM db_id=tmhmm from=412 to=434)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=159)
AMDSBA4_24_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26725..28164
DNA (1440bp) protein (480aa)
NADH dehydrogenase subunit M (EC:1.6.5.3)
NADH dehydrogenase subunit M (EC:1.6.5.3)
NADH dehydrogenase subunit M n=2 Tax=Sulfobacillus acidophilus RepID=G8TYH6_9FIRM (db=UNIREF evalue=1.9e-190 bit_score=671.0 identity=67.4 coverage=98.95833333333334)
seg (db=Seg db_id=seg from=27 to=42)
AMDSBA4_24_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28161..29576
DNA (1416bp) protein (472aa)
nuoN; proton-translocating NADH-quinone oxidoreductase subunit N
NADH-quinone oxidoreductase subunit N 3 n=1 Tax=Micromonospora sp. L5 RepID=E8SBC7_MICSL (db=UNIREF evalue=2.8e-45 bit_score=188.7 identity=31.5 coverage=96.61016949152543)
transmembrane_regions (db=TMHMM db_id=tmhmm from=390 to=412)
transmembrane_regions (db=TMHMM db_id=tmhmm from=432 to=454)
AMDSBA4_24_30
unknown

Not on your lists

29630..29746
DNA (117bp) protein (39aa)
29630..29746 + ( gc_cont=0.573)
Displaying items 1-30 of 43 in total

View Taxonomy