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AMDSBA4_35

Alias: AMDSBA4_C34

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_35_1
Geobacillus sp. JF8, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3..893
DNA (891bp) protein (297aa)
betaine-aldehyde dehydrogenase
Putative uncharacterized protein n=1 Tax=Aureococcus anophagefferens RepID=F0YMG8_AURAN (db=UNIREF evalue=2.5e-44 bit_score=184.9 identity=36.3 coverage=94.94949494949495)
seg (db=Seg db_id=seg from=160 to=171)
ALDEHYDE_DEHYDR_GLU (db=PatternScan db_id=PS00687 from=60 to=67 evalue=0.0 interpro_id=IPR016160 interpro_description=Aldehyde dehydrogenase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_35_2
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

932..1639
DNA (708bp) protein (236aa)
seg (db=Seg db_id=seg from=6 to=24)
seg (db=Seg db_id=seg from=45 to=55)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=225 evalue=6.4e-32 interpro_id=IPR023214 interpro_description=HAD-like domain)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=103 to=205 evalue=3.7e-16 interpro_id=IPR023214 interpro_description=HAD-like domain)
AMDSBA4_35_3
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1670..2809)
DNA (1140bp) protein (380aa)
diguanylate cyclase
Response regulator n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XDE2_9BURK (db=UNIREF evalue=8.8e-18 bit_score=97.1 identity=32.9 coverage=56.84210526315789)
seg (db=Seg db_id=seg from=140 to=152)
EAL domain-like (db=superfamily db_id=SSF141868 from=7 to=222 evalue=1.0e-41 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA4_35_4
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(3040..5394)
DNA (2355bp) protein (785aa)
ggdef domain
Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F9B1_9RHIZ (db=UNIREF evalue=1.7e-15 bit_score=90.5 identity=30.4 coverage=32.9936305732484)
seg (db=Seg db_id=seg from=189 to=202)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBA4_35_5
unknown

Not on your lists

comp(5860..5979)
DNA (120bp) protein (40aa)
5860..5979 - ( gc_cont=0.525)
AMDSBA4_35_6
RLO_PLX_64_10, Bacteria

Not on your lists

comp(6773..7540)
DNA (768bp) protein (256aa)
ADH_SHORT (db=PatternScan db_id=PS00061 from=142 to=170 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=4 to=246 evalue=1.7e-79)
3-OXOACYL-(ACYL CARRIER PROTEIN) REDUCTASE-RELATED (db=HMMPanther db_id=PTHR19410:SF85 from=2 to=245 evalue=1.5e-77)
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=2 to=245 evalue=1.5e-77)
AMDSBA4_35_7
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7567..8559)
DNA (993bp) protein (331aa)
alcohol dehydrogenase
seg (db=Seg db_id=seg from=136 to=150)
GroES-like (db=superfamily db_id=SSF50129 from=1 to=168 evalue=1.8e-39 interpro_id=IPR011032 interpro_description=GroES-like)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=11 to=306 evalue=8.1e-38 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_35_8
Pseudothermotoga thermarum, Pseudothermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(8623..9273)
DNA (651bp) protein (217aa)
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14)
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase n=1 Tax=Lactobacillus brevis subsp. gravesensis ATCC 27305 RepID=C2D171_LACBR (db=UNIREF evalue=2.2e-26 bit_score=124.8 identity=36.6 coverage=86.63594470046083)
seg (db=Seg db_id=seg from=176 to=189)
Aldolase (db=superfamily db_id=SSF51569 from=1 to=208 evalue=8.0e-49)
AMDSBA4_35_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9266..10726)
DNA (1461bp) protein (487aa)
xylulokinase
Carbohydrate kinase FGGY n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q581_CATAD (db=UNIREF evalue=1.5e-22 bit_score=113.2 identity=27.6 coverage=81.51950718685832)
seg (db=Seg db_id=seg from=102 to=117)
XYLULOSE KINASE (db=HMMPanther db_id=PTHR10196 from=46 to=476 evalue=3.5e-55 interpro_id=IPR000577 interpro_description=Carbohydrate kinase, FGGY GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBA4_35_10
Candidatus Acidianus copahuensis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(10859..11854)
DNA (996bp) protein (332aa)
mannonate dehydratase (EC:4.2.1.8) rbh
Mannonate dehydratase n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFT1_9EURY (db=UNIREF evalue=1.6e-68 bit_score=265.4 identity=45.2 coverage=84.03614457831326)
Mannonate dehydratase UxuA (db=HMMPIR db_id=PIRSF016049 from=1 to=329 evalue=7.4e-106 interpro_id=IPR004628 interpro_description=Mannonate dehydratase GO=Biological Process: glucuronate catabolic process (GO:0006064), Molecular Function: mannonate dehydratase activity (GO:0008927))
no description (db=Gene3D db_id=G3DSA:3.20.20.150 from=12 to=326 evalue=2.3e-80 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
AMDSBA4_35_11
Pestalotiopsis fici, Pestalotiopsis, Xylariales, Xylariomycetidae, Ascomycota, Fungi

Not on your lists

comp(11914..12654)
DNA (741bp) protein (247aa)
glucose 1-dehydrogenase
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WB72_9CAUL (db=UNIREF evalue=3.7e-09 bit_score=67.8 identity=27.9 coverage=96.35627530364373)
seg (db=Seg db_id=seg from=97 to=110)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=241 evalue=5.8e-44)
AMDSBA4_35_12
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12760..13677)
DNA (918bp) protein (306aa)
seg (db=Seg db_id=seg from=168 to=183)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=7 to=251 evalue=4.9e-27)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=13 to=185 evalue=4.3e-19)
no description (db=HMMSmart db_id=SM00849 from=17 to=218 evalue=6.5e-16 interpro_id=IPR001279 interpro_description=Beta-lactamase-like GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA4_35_13
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14362..17481)
DNA (3120bp) protein (1040aa)
alpha-mannosidase
alpha-mannosidase
Alpha-mannosidase n=1 Tax=Acidilobus saccharovorans 345-15 RepID=D9PYY5_ACIS3 (db=UNIREF evalue=3.5e-117 bit_score=428.7 identity=31.2 coverage=76.63461538461539)
AMDSBA4_35_14
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17830..19206)
DNA (1377bp) protein (459aa)
extracellular solute-binding protein
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSZ8_9FIRM (db=UNIREF evalue=1.2e-21 bit_score=110.2 identity=32.7 coverage=53.37690631808278)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=47 to=456 evalue=6.4e-72)
no description (db=Gene3D db_id=G3DSA:3.40.190.10 from=62 to=253 evalue=2.4e-29)
AMDSBA4_35_15
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19190..20011)
DNA (822bp) protein (274aa)
ugpE; binding-protein-dependent transport system inner membrane protein
Sugar binding-protein dependent transporter system permease n=4 Tax=Gardnerella vaginalis RepID=I4LXR6_GARVA (db=UNIREF evalue=1.3e-42 bit_score=179.1 identity=34.6 coverage=96.35036496350365)
transmembrane_regions (db=TMHMM db_id=tmhmm from=235 to=257)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
AMDSBA4_35_16
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

comp(20008..20928)
DNA (921bp) protein (307aa)
binding-protein-dependent transport system inner membrane protein
Conserved Archaeal transport protein n=1 Tax=Sulfolobus acidocaldarius DSM 639 RepID=Q4J9L9_SULAC (db=UNIREF evalue=6.2e-30 bit_score=137.1 identity=28.8 coverage=89.90228013029315)
seg (db=Seg db_id=seg from=146 to=156)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=264)
AMDSBA4_35_17
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21911..23080)
DNA (1170bp) protein (390aa)
transcriptional regulator/sugar kinase
Putative sugar binding signalling protein n=1 Tax=Mycoplasma mobile 163K RepID=Q6KI87_MYCMO (db=UNIREF evalue=7.2e-07 bit_score=60.8 identity=25.4 coverage=47.43589743589743)
ROK FAMILY (db=HMMPanther db_id=PTHR18964 from=148 to=376 evalue=9.1e-44)
GLUCOSE KINASE (db=HMMPanther db_id=PTHR18964:SF37 from=148 to=376 evalue=9.1e-44)
AMDSBA4_35_18
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

24250..24840
DNA (591bp) protein (197aa)
transcriptional regulator, TetR family
TetR family transcriptional regulator n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JUU6_9NOCA (db=UNIREF evalue=8.0e-15 bit_score=86.3 identity=31.3 coverage=88.83248730964468)
HTH_TETR_1 (db=PatternScan db_id=PS01081 from=23 to=54 evalue=0.0 interpro_id=IPR023772 interpro_description=DNA-binding HTH domain, TetR-type, conserved site)
Tetracyclin repressor-like, C-terminal domain (db=superfamily db_id=SSF48498 from=80 to=191 evalue=2.0e-18 interpro_id=IPR011075 interpro_description=Tetracycline transcriptional regulator, TetR-related, C-terminal)
AMDSBA4_35_19
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24892..26262
DNA (1371bp) protein (457aa)
aminotransferase class III
Acetylornithine transaminase n=1 Tax=halophilic archaeon DL31 RepID=G2MNN2_9ARCH (db=UNIREF evalue=4.5e-61 bit_score=241.1 identity=32.2 coverage=94.74835886214443)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=259 to=296 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMINOTRANSFERASE (db=HMMPanther db_id=PTHR11986:SF24 from=26 to=454 evalue=3.8e-146)
AMDSBA4_35_20
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26358..27797
DNA (1440bp) protein (480aa)
amino acid permease
amino acid permease
Amino acid permease n=2 Tax=Streptomyces RepID=B5HYZ7_9ACTO (db=UNIREF evalue=1.2e-104 bit_score=386.0 identity=46.7 coverage=94.79166666666666)
transmembrane_regions (db=TMHMM db_id=tmhmm from=238 to=260)
AMDSBA4_35_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27972..28400
DNA (429bp) protein (143aa)
pyruvate dehydrogenase (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7R013_9EURY (db=UNIREF evalue=4.1e-45 bit_score=186.4 identity=65.0 coverage=95.1048951048951)
PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR) (db=HMMPanther db_id=PTHR11516 from=2 to=143 evalue=6.3e-33)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=2 to=143 evalue=6.7e-30)
Displaying 21 items

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