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AMDSBA4_37

Alias: AMDSBA4_C36

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA4_37_1
unknown

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1..102
-----------------
DNA (102bp)
protein (34aa)
1..102 + ( gc_cont=0.569)
AMDSBA4_37_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(900..1310)
-----------------
DNA (411bp)
protein (137aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=120)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA4_37_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1337..1786)
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=H5RPE3_9NOCA (db=UNIREF evalue=3.8e-09 bit_score=67.0 identity=32.6 coverage=87.33333333333333)
seg (db=Seg db_id=seg from=24 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
AMDSBA4_37_4
Planococcus donghaensis, Planococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1892..2464
-----------------
DNA (573bp)
protein (191aa)
seg (db=Seg db_id=seg from=70 to=84)
(db=HMMPfam db_id=PF11706 from=144 to=183 evalue=8.5e-13 interpro_id=IPR021005 interpro_description=Zinc finger, CGNR)
(db=HMMPfam db_id=PF07336 from=10 to=128 evalue=2.3e-07 interpro_id=IPR010852 interpro_description=Protein of unknown function DUF1470)
Putative uncharacterized protein n=1 Tax=Planococcus donghaensis MPA1U2 RepID=E7RKK2_9BACL
AMDSBA4_37_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2598..3059
-----------------
DNA (462bp)
protein (154aa)
ctsR; transcriptional repressor
Firmicute transcriptional repressor of class III stress genes n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTJ7_9FIRM (db=UNIREF evalue=4.8e-15 bit_score=86.7 identity=34.9 coverage=95.45454545454545)
seg (db=Seg db_id=seg from=60 to=67)
(db=HMMPfam db_id=PF05848 from=1 to=148 evalue=6.1e-47 interpro_id=IPR008463 interpro_description=Firmicute transcriptional repressor of class III stress genes)
AMDSBA4_37_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3064..3633
-----------------
DNA (570bp)
protein (190aa)
UvrB/UvrC protein
UVR domain protein n=1 Tax=Listeria grayi DSM 20601 RepID=D7UVR4_LISGR (db=UNIREF evalue=5.7e-18 bit_score=96.7 identity=32.0 coverage=86.8421052631579)
coiled-coil (db=Coil db_id=coil from=158 to=186 evalue=NA)
(db=HMMPfam db_id=PF02151 from=146 to=177 evalue=1.3e-08 interpro_id=IPR001943 interpro_description=UvrB/UvrC protein GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
AMDSBA4_37_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3623..4666
-----------------
DNA (1044bp)
protein (348aa)
ATP:guanido phosphotransferase
Putative ATP:guanido phosphotransferase CLJU_c41340 n=1 Tax=Clostridium ljungdahlii DSM 13528 RepID=D8GJ68_CLOLD (db=UNIREF evalue=5.0e-68 bit_score=263.8 identity=42.8 coverage=94.54022988505747)
PHOSPHAGEN_KINASE (db=PatternScan db_id=PS00112 from=159 to=165 evalue=0.0 interpro_id=IPR022415 interpro_description=ATP:guanido phosphotransferase active site GO=Molecular Function: kinase activity (GO:0016301), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
ARGININE OR CREATINE KINASE (db=HMMPanther db_id=PTHR11547 from=4 to=272 evalue=7.3e-113 interpro_id=IPR000749 interpro_description=ATP:guanido phosphotransferase GO=Molecular Function: kinase activity (GO:0016301), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
AMDSBA4_37_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4683..7142
-----------------
DNA (2460bp)
protein (820aa)
ATPase AAA-2 domain-containing protein
ATPase AAA-2 domain-containing protein
Chaperone protein ClpB 1 n=8 Tax=Streptomyces RepID=CLPB1_STRAW (db=UNIREF evalue=2.6e-107 bit_score=395.6 identity=38.4 coverage=84.39024390243902)
AMDSBA4_37_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7242..7820
-----------------
DNA (579bp)
protein (193aa)
sms; DNA repair protein RadA
DNA repair protein RadA n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I531_SULAT (db=UNIREF evalue=1.7e-57 bit_score=228.0 identity=64.1 coverage=95.85492227979275)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=19 to=186 evalue=1.7e-33)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=135 to=159 evalue=7.0e-33 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
AMDSBA4_37_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7889..8605
-----------------
DNA (717bp)
protein (239aa)
hypothetical protein (db=KEGG evalue=5.5e-10 bit_score=70.1 identity=29.4 coverage=92.05020920502092)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWW5_9FIRM (db=UNIREF evalue=7.2e-10 bit_score=70.1 identity=29.4 coverage=92.05020920502092)
AMDSBA4_37_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8624..9325
-----------------
DNA (702bp)
protein (234aa)
sms; DNA repair protein RadA
DNA repair protein radA n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D7Z1_9RHOB (db=UNIREF evalue=1.0e-40 bit_score=172.6 identity=45.2 coverage=84.1880341880342)
seg (db=Seg db_id=seg from=207 to=221)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=27 to=198 evalue=3.1e-31 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
AMDSBA4_37_12
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9339..10367
-----------------
DNA (1029bp)
protein (343aa)
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F6V9_SACEN (db=UNIREF evalue=1.7e-07 bit_score=62.8 identity=45.1 coverage=19.24198250728863)
seg (db=Seg db_id=seg from=120 to=132)
(db=HMMPfam db_id=PF02457 from=22 to=137 evalue=4.3e-28 interpro_id=IPR003390 interpro_description=DNA integrity scanning protein, DisA, N-terminal)
AMDSBA4_37_13
Clostridium haemolyticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10360..10776)
-----------------
DNA (417bp)
protein (139aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1R1P4_CLOBU (db=UNIREF evalue=4.0e-29 bit_score=133.3 identity=48.9 coverage=92.80575539568345)
seg (db=Seg db_id=seg from=103 to=114)
AMDSBA4_37_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11027..12145
-----------------
DNA (1119bp)
protein (373aa)
PilT protein domain-containing protein
PilT protein domain-containing protein
Uncharacterized PIN and TRAM-domain containing protein YacL n=21 Tax=Bacillus RepID=YACL_BACSU (db=UNIREF evalue=2.2e-90 bit_score=338.2 identity=52.4 coverage=95.97855227882037)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBA4_37_15
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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13427..13720
-----------------
DNA (294bp)
protein (98aa)
phosphoenolpyruvate-dependent sugar phosphotransferase systemEIIB, probable galactitol specific
PTS system, Lactose/Cellobiose specific IIB subunit (db=superfamily db_id=SSF52794 from=2 to=95 evalue=1.5e-19)
(db=HMMPfam db_id=PF02302 from=7 to=85 evalue=6.3e-15 interpro_id=IPR003501 interpro_description=Phosphotransferase system, EIIB component, type 2/3 GO=Molecular Function: protein-N(PI)-phosphohistidine-sugar phosphotransferase activity (GO:0008982), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401))
PTS_EIIB_TYPE_2 (db=ProfileScan db_id=PS51099 from=5 to=97 evalue=15.558 interpro_id=IPR013011 interpro_description=Phosphotransferase system, EIIB component, type 2 GO=Molecular Function: sugar:hydrogen symporter activity (GO:0005351), Molecular Function: protein-N(PI)-phosphohistidine-sugar phosphotransferase activity (GO:0008982), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401))
AMDSBA4_37_16
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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13736..15100
-----------------
DNA (1365bp)
protein (455aa)
PTS system IIC component, Gat family protein
PTS system IIC component, Gat family protein
PTS system, galactitol-specific IIC component n=104 Tax=Enterobacteriaceae RepID=B3YEA2_SALET (db=UNIREF evalue=1.1e-99 bit_score=369.4 identity=42.3 coverage=93.4065934065934)
AMDSBA4_37_17
Thermoanaerobacter siderophilus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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15093..15578
-----------------
DNA (486bp)
protein (162aa)
PtsN; PTS system mannitol/fructose-specific transporter subunit IIA domain-containing protein
PTS family fructose/mannitol porter component IIA n=15 Tax=Enterococcus faecalis RepID=C2H0N8_ENTFL (db=UNIREF evalue=7.3e-14 bit_score=82.8 identity=32.1 coverage=80.24691358024691)
seg (db=Seg db_id=seg from=105 to=119)
Phoshotransferase/anion transport protein (db=superfamily db_id=SSF55804 from=1 to=157 evalue=9.1e-30 interpro_id=IPR016152 interpro_description=Phosphotransferase/anion transporter GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
AMDSBA4_37_18
Vibrio sp. JCM 19052, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15985..17586)
-----------------
DNA (1602bp)
protein (534aa)
ptsI; phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=2 Tax=Gordonia polyisoprenivorans RepID=H0RHD4_9ACTO (db=UNIREF evalue=1.3e-54 bit_score=219.9 identity=32.2 coverage=87.64044943820225)
seg (db=Seg db_id=seg from=339 to=350)
seg (db=Seg db_id=seg from=32 to=48)
AMDSBA4_37_19
Sebaldella termitidis, Sebaldella, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(17651..17917)
-----------------
DNA (267bp)
protein (89aa)
phosphotransferase system, phosphocarrier protein HPr
Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB17_9FIRM (db=UNIREF evalue=2.9e-12 bit_score=76.6 identity=43.7 coverage=96.62921348314607)
PTS_HPR_HIS (db=PatternScan db_id=PS00369 from=13 to=20 evalue=0.0 interpro_id=IPR001020 interpro_description=Phosphotransferase system, HPr histidine phosphorylation site GO=Molecular Function: sugar:hydrogen symporter activity (GO:0005351), Biological Process: transport (GO:0006810), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401))
PTS_HPR_SER (db=PatternScan db_id=PS00589 from=39 to=54 evalue=0.0 interpro_id=IPR002114 interpro_description=Phosphotransferase system, HPr serine phosphorylation site GO=Molecular Function: sugar:hydrogen symporter activity (GO:0005351), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401))
AMDSBA4_37_20
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(17921..18859)
-----------------
DNA (939bp)
protein (313aa)
transcriptional regulator
Transcriptional regulator n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4L6_9ACTO (db=UNIREF evalue=4.1e-37 bit_score=161.0 identity=35.7 coverage=96.48562300319489)
(db=HMMPfam db_id=PF04198 from=61 to=306 evalue=1.2e-64 interpro_id=IPR007324 interpro_description=Sugar-binding domain, putative GO=Molecular Function: carbohydrate binding (GO:0030246))
(db=HMMPfam db_id=PF04545 from=12 to=43 evalue=1.9e-06 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBA4_37_21
Bacillus halodurans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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19100..20101
-----------------
DNA (1002bp)
protein (334aa)
acetoin dehydrogenase subunit alpha
Catalytic activity: Pyruvate + Lipoamide <=> S-Acetyldihydrolipoamide + CO2 n=4 Tax=Aspergillus RepID=A2QWB4_ASPNC (db=UNIREF evalue=4.8e-52 bit_score=210.7 identity=38.1 coverage=94.01197604790418)
seg (db=Seg db_id=seg from=7 to=16)
seg (db=Seg db_id=seg from=296 to=310)
AMDSBA4_37_22
Bacillus subterraneus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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20094..21089
-----------------
DNA (996bp)
protein (332aa)
pyruvate dehydrogenase
pyruvate dehydrogenase
2-oxoacid dehydrogenase E1 component beta subunit n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QVV5_9EURY (db=UNIREF evalue=4.6e-71 bit_score=273.9 identity=44.2 coverage=95.18072289156626)
seg (db=Seg db_id=seg from=261 to=276)
AMDSBA4_37_23
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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21086..22303
-----------------
DNA (1218bp)
protein (406aa)
pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex n=7 Tax=Sinorhizobium RepID=ODP2_RHIME (db=UNIREF evalue=7.6e-44 bit_score=183.7 identity=32.2 coverage=98.76847290640394)
seg (db=Seg db_id=seg from=127 to=148)
DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED (db=HMMPanther db_id=PTHR23151 from=4 to=379 evalue=4.7e-84)
AMDSBA4_37_24
Thermoanaerobacter siderophilus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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22334..22690
-----------------
DNA (357bp)
protein (119aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Bacillus sp. 1NLA3E RepID=H1HXK4_9BACI (db=UNIREF evalue=1.0e-12 bit_score=78.6 identity=38.1 coverage=75.63025210084034)
Uncharacterized protein n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9KRM3_9THEO
Displaying 24 items

View Taxonomy