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AMDSBA4_41

Alias: AMDSBA4_C40

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Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_41_1
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2..211
DNA (210bp) protein (70aa)
2..211 + ( gc_cont=0.571)
Uncharacterized protein {ECO:0000313|EMBL:ETI86646.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativ
AMDSBA4_41_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(271..1407)
DNA (1137bp) protein (379aa)
glycoside hydrolase family protein
Glycosyl hydrolase, family 18 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AAF0_9CLOT (db=UNIREF evalue=2.5e-28 bit_score=132.1 identity=30.0 coverage=71.76781002638522)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
CHITINASE_18 (db=PatternScan db_id=PS01095 from=180 to=188 evalue=0.0 interpro_id=IPR001579 interpro_description=Glycoside hydrolase, chitinase active site GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA4_41_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1506..2192
DNA (687bp) protein (229aa)
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=D3Q8S2_STANL (db=UNIREF evalue=1.8e-34 bit_score=151.8 identity=41.8 coverage=95.19650655021834)
SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) (db=HMMPanther db_id=PTHR23283:SF47 from=2 to=120 evalue=6.0e-24)
no description (db=HMMSmart db_id=SM00448 from=1 to=111 evalue=1.3e-38 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA4_41_4
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

2189..3529
DNA (1341bp) protein (447aa)
periplasmic sensor signal transduction histidine kinase
seg (db=Seg db_id=seg from=392 to=407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=286 to=305)
AMDSBA4_41_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3504..4859)
DNA (1356bp) protein (452aa)
amino acid permease
amino acid permease
Amino acid permease-associated region n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU7_9FIRM (db=UNIREF evalue=5.2e-150 bit_score=536.6 identity=61.5 coverage=96.90265486725663)
transmembrane_regions (db=TMHMM db_id=tmhmm from=222 to=244)
AMDSBA4_41_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4861..5202)
DNA (342bp) protein (114aa)
Putative sterol carrier protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU6_9FIRM (db=UNIREF evalue=9.3e-32 bit_score=141.7 identity=57.5 coverage=98.24561403508771)
putative sterol carrier protein
Sterol carrier protein, SCP (db=superfamily db_id=SSF55718 from=1 to=103 evalue=1.7e-08 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
Putative sterol carrier protein {ECO:0000313|EMBL:AEJ38458.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" sourc
AMDSBA4_41_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5231..6127)
DNA (897bp) protein (299aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRQ6_9FIRM (db=UNIREF evalue=9.8e-65 bit_score=252.7 identity=47.0 coverage=92.3076923076923)
seg (db=Seg db_id=seg from=74 to=83)
Uncharacterized protein {ECO:0000313|EMBL:AEW03793.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA4_41_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6193..7686)
DNA (1494bp) protein (498aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=SYK_PSYIN (db=UNIREF evalue=4.9e-117 bit_score=427.2 identity=46.9 coverage=93.97590361445783)
seg (db=Seg db_id=seg from=415 to=427)
AMDSBA4_41_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7708..8256)
DNA (549bp) protein (183aa)
greA; GreA/GreB family elongation factor
Transcription elongation factor GreA n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=GREA_ALKOO (db=UNIREF evalue=2.2e-43 bit_score=181.0 identity=58.0 coverage=85.24590163934425)
seg (db=Seg db_id=seg from=36 to=49)
coiled-coil (db=Coil db_id=coil from=38 to=59 evalue=NA)
AMDSBA4_41_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8308..8850)
DNA (543bp) protein (181aa)
helix-turn-helix domain-containing protein
Putative uncharacterized protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T6_NATTJ (db=UNIREF evalue=3.2e-34 bit_score=150.6 identity=40.0 coverage=92.81767955801105)
Helix-turn-helix domain protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I506_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEW03790.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA4_41_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8841..9827)
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU1_9FIRM (db=UNIREF evalue=1.8e-136 bit_score=491.1 identity=71.0 coverage=99.3920972644377)
tRNA-U20-dihydrouridine synthase
tRNA-U20-dihydrouridine synthase
AMDSBA4_41_12
unknown

Not on your lists

comp(9864..10946)
DNA (1083bp) protein (361aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=229 to=251)
transmembrane_regions (db=TMHMM db_id=tmhmm from=151 to=173)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=98)
AMDSBA4_41_13
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(10939..12162)
DNA (1224bp) protein (408aa)
hypothetical protein
seg (db=Seg db_id=seg from=11 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=48)
seg (db=Seg db_id=seg from=338 to=353)
AMDSBA4_41_14
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(12159..13124)
DNA (966bp) protein (322aa)
ATPase
Methanol dehydrogenase regulatory protein n=1 Tax=Desmospora sp. 8437 RepID=F5SBX1_9BACL (db=UNIREF evalue=6.8e-72 bit_score=276.6 identity=45.3 coverage=94.40993788819875)
seg (db=Seg db_id=seg from=34 to=47)
seg (db=Seg db_id=seg from=217 to=237)
AMDSBA4_41_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13166..14458)
DNA (1293bp) protein (431aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU0_9FIRM (db=UNIREF evalue=1.2e-44 bit_score=186.4 identity=33.4 coverage=93.27146171693735)
seg (db=Seg db_id=seg from=211 to=219)
seg (db=Seg db_id=seg from=338 to=350)
AMDSBA4_41_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14543..15319)
DNA (777bp) protein (259aa)
Type III pantothenate kinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWT9_9FIRM (db=UNIREF evalue=8.2e-84 bit_score=315.8 identity=61.3 coverage=97.68339768339769)
pantothenate kinase (EC:2.7.1.33)
pantothenate kinase (EC:2.7.1.33)
AMDSBA4_41_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15579..16229
DNA (651bp) protein (217aa)
ahpC; peroxiredoxin rbh
Peroxiredoxin n=11 Tax=Acetobacter RepID=C7JQZ5_ACEPA (db=UNIREF evalue=2.4e-52 bit_score=211.1 identity=52.6 coverage=92.62672811059907)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=6 to=198 evalue=1.9e-90)
PEROXIREDOXIN-RELATED (db=HMMPanther db_id=PTHR10681:SF10 from=6 to=198 evalue=1.9e-90)
AMDSBA4_41_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16278..17603)
DNA (1326bp) protein (442aa)
hypothetical protein
Pyrrolo-quinoline quinone repeat-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ81_9FIRM (db=UNIREF evalue=1.4e-131 bit_score=475.3 identity=54.0 coverage=98.86877828054298)
seg (db=Seg db_id=seg from=10 to=23)
seg (db=Seg db_id=seg from=132 to=146)
AMDSBA4_41_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17809..19035
DNA (1227bp) protein (409aa)
molybdopterin molybdochelatase
Putative molybdopterin biosynthesis MoeA protein n=1 Tax=uncultured organism HF10_3D09 RepID=Q2Q0E1_9ZZZZ (db=UNIREF evalue=3.1e-45 bit_score=188.3 identity=35.3 coverage=84.10757946210269)
seg (db=Seg db_id=seg from=210 to=220)
MOLYBDOPTERIN BIOSYNTHESIS PROTEIN (db=HMMPanther db_id=PTHR10192 from=1 to=406 evalue=6.6e-143)
AMDSBA4_41_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19137..19871
DNA (735bp) protein (245aa)
phage shock protein A, PspA
Phage shock protein A, PspA n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYT6_ACIFD (db=UNIREF evalue=9.3e-37 bit_score=159.5 identity=36.8 coverage=95.10204081632652)
coiled-coil (db=Coil db_id=coil from=48 to=76 evalue=NA)
coiled-coil (db=Coil db_id=coil from=95 to=151 evalue=NA)
AMDSBA4_41_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20294..21220
DNA (927bp) protein (309aa)
ribD; riboflavin biosynthesis protein RibD
Riboflavin biosynthesis protein RibD n=5 Tax=Synechocystis sp. PCC 6803 RepID=RIBD_SYNY3 (db=UNIREF evalue=1.5e-36 bit_score=159.1 identity=37.0 coverage=91.58576051779936)
seg (db=Seg db_id=seg from=56 to=67)
RIBOFLAVIN-SPECIFIC DEAMINASE (db=HMMPanther db_id=PTHR11079:SF10 from=3 to=297 evalue=1.7e-65 interpro_id=IPR004794 interpro_description=Riboflavin biosynthesis protein RibD GO=Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835), Biological Process: riboflavin biosynthetic process (GO:0009231), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_41_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21245..21844
DNA (600bp) protein (200aa)
ribE; riboflavin synthase subunit alpha
Riboflavin synthase n=11 Tax=Bacillus RepID=RISA_BACAM (db=UNIREF evalue=2.1e-34 bit_score=151.4 identity=42.1 coverage=97.0)
Riboflavin synthase, alpha subunit (db=HMMPIR db_id=PIRSF000498 from=1 to=198 evalue=8.2e-78 interpro_id=IPR001783 interpro_description=Lumazine-binding protein GO=Molecular Function: riboflavin synthase activity (GO:0004746), Biological Process: riboflavin biosynthetic process (GO:0009231))
RIBOFLAVIN SYNTHASE ALPHA CHAIN (db=HMMPanther db_id=PTHR21098 from=1 to=194 evalue=3.3e-70 interpro_id=IPR001783 interpro_description=Lumazine-binding protein GO=Molecular Function: riboflavin synthase activity (GO:0004746), Biological Process: riboflavin biosynthetic process (GO:0009231))
AMDSBA4_41_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21847..23085
DNA (1239bp) protein (413aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase
Riboflavin biosynthesis protein ribBA n=1 Tax=Chlorobium luteolum DSM 273 RepID=RIBBA_PELLD (db=UNIREF evalue=1.2e-126 bit_score=458.8 identity=58.1 coverage=94.91525423728814)
AMDSBA4_41_24
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

23155..23622
DNA (468bp) protein (156aa)
ribH; riboflavin synthase
6,7-dimethyl-8-ribityllumazine synthase 1 n=70 Tax=Pseudomonas RepID=RISB1_PSESM (db=UNIREF evalue=1.5e-32 bit_score=144.8 identity=51.1 coverage=87.82051282051282)
seg (db=Seg db_id=seg from=138 to=150)
lumazine-synth: 6,7-dimethyl-8-ribityl (db=HMMTigr db_id=TIGR00114 from=14 to=150 evalue=1.2e-62 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
AMDSBA4_41_25
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23619..24896)
DNA (1278bp) protein (426aa)
bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor (EC:6.3.4.15)
Possible biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Oribacterium sinus F0268 RepID=C2L0X5_9FIRM (db=UNIREF evalue=2.4e-16 bit_score=92.4 identity=29.0 coverage=56.33802816901409)
seg (db=Seg db_id=seg from=92 to=104)
seg (db=Seg db_id=seg from=163 to=171)
AMDSBA4_41_26
Rhodococcus pyridinivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24889..25248)
DNA (360bp) protein (120aa)
dihydroneopterin aldolase
Uncharacterized protein n=1 Tax=Glycine max RepID=C6T284_SOYBN (db=UNIREF evalue=1.3e-12 bit_score=78.2 identity=39.0 coverage=96.66666666666667)
seg (db=Seg db_id=seg from=55 to=64)
no description (db=HMMSmart db_id=SM00905 from=5 to=117 evalue=1.0e-37 interpro_id=IPR006157 interpro_description=Dihydroneopterin aldolase/epimerase domain GO=Molecular Function: dihydroneopterin aldolase activity (GO:0004150), Biological Process: folic acid-containing compound metabolic process (GO:0006760))
AMDSBA4_41_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25241..26074)
DNA (834bp) protein (278aa)
Dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=Bacillus sp. SG-1 RepID=A6CT71_9BACI (db=UNIREF evalue=3.4e-43 bit_score=181.0 identity=37.1 coverage=90.28776978417267)
DHPS_2 (db=PatternScan db_id=PS00793 from=55 to=68 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine-containing compound metabolic process (GO:0042558))
DHPS_1 (db=PatternScan db_id=PS00792 from=21 to=36 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine-containing compound metabolic process (GO:0042558))
AMDSBA4_41_28
Candidatus Acidianus copahuensis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(26340..27701)
DNA (1362bp) protein (454aa)
Permeases of the major facilitator superfamily rbh
Permeases of the major facilitator superfamily rbh
Major facilitator superfamily MFS_1 n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8M9X1_CALMQ (db=UNIREF evalue=2.4e-123 bit_score=448.0 identity=47.0 coverage=97.57709251101322)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
AMDSBA4_41_29
Thermoplasmatales archaeon A-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(28147..28455)
DNA (309bp) protein (103aa)
hypothetical protein
L-rhamnose mutarotase n=1 Tax=Burkholderia ambifaria MC40-6 RepID=RHAM_BURA4 (db=UNIREF evalue=3.4e-09 bit_score=66.6 identity=34.0 coverage=93.20388349514563)
(db=HMMPfam db_id=PF05336 from=1 to=100 evalue=4.1e-28 interpro_id=IPR008000 interpro_description=Rhamnose mutarotase GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives (GO:0016857), Biological Process: rhamnose metabolic process (GO:0019299))
Uncharacterized protein {ECO:0000313|EMBL:EQB70756.1}; TaxID=667135 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; environmental samples.;" source="Thermoplasmatales archaeon A-pl
AMDSBA4_41_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28488..29114)
DNA (627bp) protein (209aa)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=1 to=204 evalue=2.0e-28)
(db=HMMPfam db_id=PF02589 from=100 to=202 evalue=4.4e-18 interpro_id=IPR003741 interpro_description=Domain of unknown function DUF162)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW05583.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Displaying items 1-30 of 33 in total

View Taxonomy