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AMDSBA4_42

Alias: AMDSBA4_C41

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA4_42_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..225
-----------------
DNA (225bp)
protein (75aa)
Copper-translocating P-type ATPase n=1 Tax=Halalkalicoccus jeotgali B3 RepID=D8J3X7_HALJB (db=UNIREF evalue=6.6e-10 bit_score=68.6 identity=56.6 coverage=69.33333333333334)
seg (db=Seg db_id=seg from=32 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
COPPER-TRANSPORTING ATPASE P-TYPE (COPA) (db=HMMPanther db_id=PTHR11939:SF39 from=1 to=58 evalue=8.0e-23)
AMDSBA4_42_2
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

210..371
-----------------
DNA (162bp)
protein (54aa)
(db=HMMPfam db_id=PF04945 from=8 to=50 evalue=8.3e-15 interpro_id=IPR007029 interpro_description=YHS)
no description (db=HMMSmart db_id=SM00746 from=6 to=44 evalue=4.4e-07 interpro_id=IPR011017 interpro_description=TRASH)
Ferritin-like (db=superfamily db_id=SSF47240 from=8 to=47 evalue=1.7e-06 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation-reduction process (GO:0055114))
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family n=1 Tax=Saccharomonospora glauca K62 RepID=I1CXV4_9PSEU
AMDSBA4_42_3
unknown

Not on your lists

comp(1166..1294)
-----------------
DNA (129bp)
protein (43aa)
1166..1294 - ( gc_cont=0.527)
AMDSBA4_42_4
Thermus scotoductus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(1391..1936)
-----------------
DNA (546bp)
protein (182aa)
OsmC family protein
OsmC-like protein n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IK41_ANADE (db=UNIREF evalue=9.0e-37 bit_score=159.1 identity=44.4 coverage=96.7032967032967)
seg (db=Seg db_id=seg from=81 to=95)
OsmC-like (db=superfamily db_id=SSF82784 from=25 to=181 evalue=3.1e-25 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
AMDSBA4_42_5
unknown

Not on your lists

2526..2888
-----------------
DNA (363bp)
protein (121aa)
Cupredoxins (db=superfamily db_id=SSF49503 from=13 to=120 evalue=4.6e-06 interpro_id=IPR008972 interpro_description=Cupredoxin)
AMDSBA4_42_6
unknown

Not on your lists

3342..3755
-----------------
DNA (414bp)
protein (138aa)
TT1751-like (db=superfamily db_id=SSF103247 from=5 to=127 evalue=6.3e-16 interpro_id=IPR005180 interpro_description=Domain of unknown function DUF302)
(db=HMMPfam db_id=PF03625 from=36 to=97 evalue=2.3e-07 interpro_id=IPR005180 interpro_description=Domain of unknown function DUF302)
AMDSBA4_42_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4544..4828)
-----------------
DNA (285bp)
protein (95aa)
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein n=5 Tax=Sulfobacillus acidophilus RepID=G8TUF1_9FIRM (db=UNIREF evalue=5.0e-23 bit_score=112.5 identity=79.2 coverage=71.57894736842105)
coiled-coil (db=Coil db_id=coil from=53 to=74 evalue=NA)
(db=HMMPfam db_id=PF01527 from=11 to=67 evalue=6.4e-07 interpro_id=IPR002514 interpro_description=Transposase IS3/IS911family GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBA4_42_8
unknown

Not on your lists

comp(5176..6096)
-----------------
DNA (921bp)
protein (307aa)
5176..6096 - ( gc_cont=0.510)
AMDSBA4_42_9
unknown

Not on your lists

comp(6170..6859)
-----------------
DNA (690bp)
protein (230aa)
DNase I-like (db=superfamily db_id=SSF56219 from=1 to=229 evalue=2.1e-09 interpro_id=IPR005135 interpro_description=Endonuclease/exonuclease/phosphatase)
AMDSBA4_42_10
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7469..9478)
-----------------
DNA (2010bp)
protein (670aa)
bacterio-opsin activator HTH domain-containing protein
Transcriptional regulator, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRD5_PAESJ (db=UNIREF evalue=5.3e-26 bit_score=125.2 identity=24.3 coverage=67.61194029850746)
seg (db=Seg db_id=seg from=77 to=87)
seg (db=Seg db_id=seg from=648 to=656)
AMDSBA4_42_11
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9702..10430)
-----------------
DNA (729bp)
protein (243aa)
phosphopantetheinyl transferase
Phosphopantethiene--protein transferase domain protein n=2 Tax=Phaeobacter gallaeciensis RepID=A9ELX5_9RHOB (db=UNIREF evalue=1.4e-13 bit_score=82.4 identity=28.4 coverage=83.1275720164609)
seg (db=Seg db_id=seg from=140 to=151)
PHOSPHOPANTETHEINE TRANSFERASE (db=HMMPanther db_id=PTHR12215 from=51 to=241 evalue=1.4e-35)
AMDSBA4_42_12
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10418..11026)
-----------------
DNA (609bp)
protein (203aa)
phosphatidylserine synthase
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Candidatus Midichloria mitochondrii IricVA RepID=F7XVT7_MIDMI (db=UNIREF evalue=2.1e-10 bit_score=71.6 identity=30.5 coverage=91.13300492610837)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=106)
AMDSBA4_42_13
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11032..11877)
-----------------
DNA (846bp)
protein (282aa)
phosphatidate cytidylyltransferase
Phosphatidate cytidylyltransferase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHB1_DESMR (db=UNIREF evalue=7.0e-20 bit_score=103.6 identity=31.9 coverage=87.58865248226951)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=142)
transmembrane_regions (db=TMHMM db_id=tmhmm from=147 to=169)
AMDSBA4_42_14
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11855..12715)
-----------------
DNA (861bp)
protein (287aa)
psd; phosphatidylserine decarboxylase
Putative uncharacterized protein n=1 Tax=Polysphondylium pallidum RepID=D3BT90_POLPA (db=UNIREF evalue=3.3e-33 bit_score=147.9 identity=36.1 coverage=86.7595818815331)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
seg (db=Seg db_id=seg from=190 to=201)
AMDSBA4_42_15
unknown

Not on your lists

comp(12727..13128)
-----------------
DNA (402bp)
protein (134aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=20)
AMDSBA4_42_16
unknown

Not on your lists

comp(13104..13781)
-----------------
DNA (678bp)
protein (226aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=200 to=222)
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=75 to=97)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=54)
AMDSBA4_42_17
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13778..15373)
-----------------
DNA (1596bp)
protein (532aa)
dioxygenase
dioxygenase
Polyketide biosynthesis protein BaeE n=9 Tax=Bacillus RepID=BAEE_BACA2 (db=UNIREF evalue=4.4e-92 bit_score=344.4 identity=40.0 coverage=84.21052631578947)
Inosine monophosphate dehydrogenase (IMPDH) (db=superfamily db_id=SSF51412 from=75 to=357 evalue=1.6e-12)
AMDSBA4_42_18
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15370..19737)
-----------------
DNA (4368bp)
protein (1456aa)
putative beta-ketoacyl synthase
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase, FabA/FabZ n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21MX8_SACD2 (db=UNIREF evalue=1.2e-229 bit_score=802.7 identity=35.0 coverage=93.95604395604396)
seg (db=Seg db_id=seg from=332 to=348)
POLYKETIDE SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11712 from=2 to=366 evalue=9.2e-90 interpro_id=IPR000794 interpro_description=Beta-ketoacyl synthase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058))
AMDSBA4_42_19
unknown

Not on your lists

19783..19893
-----------------
DNA (111bp)
protein (37aa)
19783..19893 + ( gc_cont=0.532)
Displaying 19 items

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