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AMDSBA4_84

Alias: AMDSBA4_C83

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_84_1
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..363)
DNA (363bp) protein (121aa)
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
seg (db=Seg db_id=seg from=79 to=88)
seg (db=Seg db_id=seg from=104 to=119)
AMDSBA4_84_2
unknown

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comp(516..689)
DNA (174bp) protein (58aa)
516..689 - ( gc_cont=0.517)
AMDSBA4_84_3

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comp(1000..1212)
DNA (213bp) protein (71aa)
1000..1212 - ( gc_cont=0.549)
Uncharacterized protein {ECO:0000313|EMBL:KKL51482.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
AMDSBA4_84_4
unknown

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comp(1239..1562)
DNA (324bp) protein (108aa)
seg (db=Seg db_id=seg from=92 to=102)
AMDSBA4_84_5
unknown

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comp(1631..2125)
DNA (495bp) protein (165aa)
1631..2125 - ( gc_cont=0.549)
AMDSBA4_84_6
unknown

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comp(2190..2402)
DNA (213bp) protein (71aa)
seg (db=Seg db_id=seg from=47 to=68)
AMDSBA4_84_7
unknown

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comp(2677..2976)
DNA (300bp) protein (100aa)
2677..2976 - ( gc_cont=0.570)
AMDSBA4_84_8
unknown

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comp(2973..3254)
DNA (282bp) protein (94aa)
seg (db=Seg db_id=seg from=58 to=69)
AMDSBA4_84_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3315..3797)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis RepID=C3CU14_BACTU (db=UNIREF evalue=2.3e-15 bit_score=87.8 identity=31.7 coverage=98.13664596273291)
seg (db=Seg db_id=seg from=135 to=145)
Uncharacterized protein {ECO:0000313|EMBL:BAO04725.1}; TaxID=1407017 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum B str. Osaka
hypothetical protein
AMDSBA4_84_10
unknown

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comp(3885..4253)
DNA (369bp) protein (123aa)
3885..4253 - ( gc_cont=0.623)
AMDSBA4_84_11
unknown

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comp(4277..4885)
DNA (609bp) protein (203aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=179 to=201)
AMDSBA4_84_12
unknown

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comp(4869..5072)
DNA (204bp) protein (68aa)
4869..5072 - ( gc_cont=0.554)
AMDSBA4_84_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5118..5306)
DNA (189bp) protein (63aa)
seg (db=Seg db_id=seg from=14 to=28)
(db=HMMPfam db_id=PF02609 from=13 to=57 evalue=1.1e-11 interpro_id=IPR003761 interpro_description=Exonuclease VII, small subunit GO=Biological Process: DNA catabolic process (GO:0006308), Molecular Function: exodeoxyribonuclease VII activity (GO:0008855), Cellular Component: exodeoxyribonuclease VII complex (GO:0009318))
XseB-like (db=superfamily db_id=SSF116842 from=3 to=57 evalue=3.4e-09)
AMDSBA4_84_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5390..6568)
DNA (1179bp) protein (393aa)
xseA; hypothetical protein
Exodeoxyribonuclease 7 large subunit n=1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CZ75_9BACT (db=UNIREF evalue=9.6e-52 bit_score=209.9 identity=37.0 coverage=95.67430025445293)
seg (db=Seg db_id=seg from=216 to=234)
seg (db=Seg db_id=seg from=256 to=268)
AMDSBA4_84_15
unknown

Not on your lists

comp(6571..6795)
DNA (225bp) protein (75aa)
6571..6795 - ( gc_cont=0.644)
AMDSBA4_84_16
unknown

Not on your lists

comp(6788..7078)
DNA (291bp) protein (97aa)
6788..7078 - ( gc_cont=0.553)
AMDSBA4_84_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7059..7310)
DNA (252bp) protein (84aa)
7059..7310 - ( gc_cont=0.607)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW04265.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8U132_SULAD
AMDSBA4_84_18
Arcanobacterium haemolyticum, Arcanobacterium, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7310..7501)
DNA (192bp) protein (64aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=5 to=53 evalue=1.1e-08 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF05930 from=4 to=38 evalue=0.00022 interpro_id=IPR010260 interpro_description=Bacteriophage P4, Orf88)
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:ADH92037.1}; TaxID=644284 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Arcanobacterium.;" source="Arcanobacter
AMDSBA4_84_19
unknown

Not on your lists

comp(7553..7696)
DNA (144bp) protein (48aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=4 to=32)
AMDSBA4_84_20
unknown

Not on your lists

comp(7693..7869)
DNA (177bp) protein (59aa)
seg (db=Seg db_id=seg from=12 to=23)
AMDSBA4_84_21
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(8251..8550)
DNA (300bp) protein (100aa)
8251..8550 - ( gc_cont=0.583)
Gp65 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
Displaying 21 items

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