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AMDSBA4_86

Alias: AMDSBA4_C85

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA4_86_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..299)
-----------------
DNA (297bp)
protein (99aa)
CbbX protein
ATP-binding protein (RuBisCO operon) n=1 Tax=Azospirillum lipoferum 4B RepID=G7ZBW0_AZOL4 (db=UNIREF evalue=1.5e-25 bit_score=120.9 identity=68.5 coverage=88.88888888888889)
CBXXCFQX (db=FPrintScan db_id=PR00820 from=43 to=57 evalue=1.4e-22 interpro_id=IPR000470 interpro_description=CbxX/CfqX, monofunctional GO=Molecular Function: ATP binding (GO:0005524))
CBXXCFQX (db=FPrintScan db_id=PR00820 from=25 to=39 evalue=1.4e-22 interpro_id=IPR000470 interpro_description=CbxX/CfqX, monofunctional GO=Molecular Function: ATP binding (GO:0005524))
AMDSBA4_86_2
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(340..1023)
-----------------
DNA (684bp)
protein (228aa)
rpe; hypothetical protein
Ribulose-phosphate 3-epimerase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECC8_9ACTN (db=UNIREF evalue=1.3e-48 bit_score=198.7 identity=45.6 coverage=96.9298245614035)
seg (db=Seg db_id=seg from=123 to=134)
RIBUL_P_3_EPIMER_1 (db=PatternScan db_id=PS01085 from=34 to=48 evalue=0.0 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA4_86_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1102..2046)
-----------------
DNA (945bp)
protein (315aa)
prkB; phosphoribulokinase rbh
Phosphoribulokinase, chloroplastic n=6 Tax=Magnoliophyta RepID=KPPR_ARATH (db=UNIREF evalue=2.8e-38 bit_score=164.9 identity=32.7 coverage=90.7936507936508)
PHOSPHORIBULOSE KINASE (db=HMMPanther db_id=PTHR10285:SF5 from=15 to=203 evalue=1.8e-74)
URIDINE KINASE RELATED (db=HMMPanther db_id=PTHR10285 from=15 to=203 evalue=1.8e-74)
AMDSBA4_86_4
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2338..2997)
-----------------
DNA (660bp)
protein (220aa)
seg (db=Seg db_id=seg from=97 to=111)
ClpP/crotonase (db=superfamily db_id=SSF52096 from=2 to=177 evalue=5.3e-32)
no description (db=Gene3D db_id=G3DSA:3.90.226.10 from=10 to=179 evalue=4.0e-26)
ENOYL-COA HYDRATASE-RELATED (db=HMMPanther db_id=PTHR11941 from=5 to=219 evalue=1.5e-23)
AMDSBA4_86_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3107..3493)
-----------------
DNA (387bp)
protein (129aa)
seg (db=Seg db_id=seg from=96 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=118)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
AMDSBA4_86_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3683..4141
-----------------
DNA (459bp)
protein (153aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Cytochrome c (db=superfamily db_id=SSF46626 from=61 to=150 evalue=2.1e-18 interpro_id=IPR009056 interpro_description=Cytochrome c domain GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
(db=HMMPfam db_id=PF00034 from=74 to=147 evalue=1.1e-10 interpro_id=IPR003088 interpro_description=Cytochrome c, class I GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
no description (db=Gene3D db_id=G3DSA:1.10.760.10 from=43 to=148 evalue=8.9e-08 interpro_id=IPR009056 interpro_description=Cytochrome c domain GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
AMDSBA4_86_7
unknown

Not on your lists

comp(4144..4428)
-----------------
DNA (285bp)
protein (95aa)
4144..4428 - ( gc_cont=0.512)
AMDSBA4_86_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4808..5020)
-----------------
DNA (213bp)
protein (71aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS63_9FIRM (db=UNIREF evalue=3.0e-12 bit_score=76.3 identity=55.2 coverage=88.73239436619718)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=41)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6T7_SULAT
AMDSBA4_86_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5040..5588)
-----------------
DNA (549bp)
protein (183aa)
cytochrome c oxidase subunit III
Cytochrome c oxidase, subunit III n=2 Tax=Sulfobacillus acidophilus RepID=G8TS62_9FIRM (db=UNIREF evalue=3.2e-50 bit_score=203.8 identity=56.4 coverage=92.89617486338798)
transmembrane_regions (db=TMHMM db_id=tmhmm from=162 to=181)
seg (db=Seg db_id=seg from=169 to=180)
AMDSBA4_86_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5601..6659)
-----------------
DNA (1059bp)
protein (353aa)
CoxA
Cytochrome c oxidase n=1 Tax=Sagittula stellata E-37 RepID=A3K8R0_9RHOB (db=UNIREF evalue=7.3e-51 bit_score=206.8 identity=33.7 coverage=98.30028328611898)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
AMDSBA4_86_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7429..8244)
-----------------
DNA (816bp)
protein (272aa)
cytochrome c oxidase subunit II rbh
cytochrome c oxidase subunit II rbh
Cytochrome c oxidase subunit II n=2 Tax=Sulfobacillus acidophilus RepID=G8TS60_9FIRM (db=UNIREF evalue=2.8e-98 bit_score=364.0 identity=64.8 coverage=96.69117647058823)
seg (db=Seg db_id=seg from=52 to=68)
no_c_heme Nicholas Justice (3/2/13)
AMDSBA4_86_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8295..8924)
-----------------
DNA (630bp)
protein (210aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TYZ7_9FIRM (db=UNIREF evalue=5.0e-55 bit_score=219.9 identity=51.7 coverage=98.09523809523809)
Cupredoxins (db=superfamily db_id=SSF49503 from=29 to=206 evalue=3.9e-10 interpro_id=IPR008972 interpro_description=Cupredoxin)
AMDSBA4_86_13
unknown

Not on your lists

comp(8943..9263)
-----------------
DNA (321bp)
protein (107aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA4_86_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9826..10872)
-----------------
DNA (1047bp)
protein (349aa)
yhdJ; DNA methylase N-4/N-6 domain-containing protein
DNA adenine modification methylase n=2 Tax=Thermoplasma volcanium GSS1 RepID=Q978B5_THEVO (db=UNIREF evalue=4.7e-18 bit_score=97.8 identity=27.7 coverage=71.34670487106017)
N6_MTASE (db=PatternScan db_id=PS00092 from=95 to=101 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=65 to=343 evalue=2.0e-52)
AMDSBA4_86_15
unknown

Not on your lists

11585..12079
-----------------
DNA (495bp)
protein (165aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=26 to=47)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
AMDSBA4_86_16
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12187..12531
-----------------
DNA (345bp)
protein (115aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYT4_EIKCO (db=UNIREF evalue=7.2e-08 bit_score=62.4 identity=30.6 coverage=89.56521739130436)
transmembrane_regions (db=TMHMM db_id=tmhmm from=18 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=91)
AMDSBA4_86_17
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12879..13370
-----------------
DNA (492bp)
protein (164aa)
12879..13370 + ( gc_cont=0.494)
AMDSBA4_86_18
unknown

Not on your lists

13367..13582
-----------------
DNA (216bp)
protein (72aa)
13367..13582 + ( gc_cont=0.560)
AMDSBA4_86_19
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

14171..15166
-----------------
DNA (996bp)
protein (332aa)
hypothetical protein
Methanol dehydrogenase regulator n=2 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6NA67_9ARCH (db=UNIREF evalue=3.3e-69 bit_score=267.7 identity=46.1 coverage=90.66265060240963)
Predicted AAA-type ATPase enzymatic complex assembly chaperone, MoxR type (db=HMMPIR db_id=PIRSF002849 from=12 to=325 evalue=2.6e-165 interpro_id=IPR016366 interpro_description=ATPase chaperone, AAA-type, MoxR, predicted)
(db=HMMPfam db_id=PF07726 from=51 to=181 evalue=1.1e-61 interpro_id=IPR011703 interpro_description=ATPase, AAA-3 GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA4_86_20
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

15163..16266
-----------------
DNA (1104bp)
protein (368aa)
Putative uncharacterized protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=E6TX37_BACCJ (db=UNIREF evalue=4.8e-29 bit_score=134.4 identity=29.6 coverage=83.15217391304348)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
(db=HMMPfam db_id=PF01882 from=195 to=273 evalue=1.2e-18 interpro_id=IPR002881 interpro_description=Domain of unknown function DUF58)
AMDSBA4_86_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16277..18370
-----------------
DNA (2094bp)
protein (698aa)
transglutaminase domain-containing protein rbh
Membrane associated transglutaminase-like enzyme n=8 Tax=Lactobacillus rhamnosus RepID=B5QRI8_LACRH (db=UNIREF evalue=2.3e-32 bit_score=146.4 identity=31.0 coverage=43.12320916905444)
seg (db=Seg db_id=seg from=31 to=57)
seg (db=Seg db_id=seg from=155 to=166)
AMDSBA4_86_22
Bacillaceae bacterium MTCC 8252, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18538..18999
-----------------
DNA (462bp)
protein (154aa)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=4 to=153 evalue=5.7e-30 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=36 to=123 evalue=1.8e-16 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
(db=HMMPfam db_id=PF00583 from=42 to=118 evalue=4.0e-16 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
N-TERMINAL ACETYLTRANSFERASE (db=HMMPanther db_id=PTHR23091 from=34 to=128 evalue=3.5e-05)
Displaying 22 items

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