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AMDSBA4_123

Alias: AMDSBA4_C122

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_123_1
GWF2_OD1_42_19, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(3..581)
DNA (579bp) protein (193aa)
hypothetical protein
RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSK5_9SYNE (db=UNIREF evalue=2.6e-10 bit_score=71.2 identity=29.9 coverage=66.32124352331607)
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=28 to=150 evalue=1.3e-19 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=30 to=144 evalue=7.0e-12)
AMDSBA4_123_2
unknown

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comp(908..1183)
DNA (276bp) protein (92aa)
908..1183 - ( gc_cont=0.572)
AMDSBA4_123_3
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1375..1836)
DNA (462bp) protein (154aa)
hypothetical protein (db=KEGG evalue=3.9e-09 bit_score=66.6 identity=32.8 coverage=77.92207792207793)
Putative uncharacterized protein n=1 Tax=Paenibacillus polymyxa SC2 RepID=E3ELC7_PAEPS (db=UNIREF evalue=5.1e-09 bit_score=66.6 identity=32.8 coverage=77.92207792207793)
seg (db=Seg db_id=seg from=130 to=144)
AMDSBA4_123_4
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1966..2886)
DNA (921bp) protein (307aa)
recA-family ATPase
RepA n=5 Tax=root RepID=D3U0R6_ECOLX (db=UNIREF evalue=1.4e-13 bit_score=82.8 identity=27.0 coverage=62.21498371335505)
seg (db=Seg db_id=seg from=38 to=49)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=11 to=272 evalue=3.0e-19)
AMDSBA4_123_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3278..4234)
DNA (957bp) protein (319aa)
putative replication protein
RepB n=3 Tax=Bacteria RepID=B9TSF8_ENTCL (db=UNIREF evalue=5.3e-32 bit_score=144.1 identity=34.4 coverage=78.99686520376176)
(db=HMMPfam db_id=PF06504 from=4 to=283 evalue=2.3e-53 interpro_id=IPR010522 interpro_description=Replication C)
Replication C family protein {ECO:0000313|EMBL:KDU52737.1}; TaxID=1444224 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escheric
AMDSBA4_123_6
unknown

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comp(4321..4653)
DNA (333bp) protein (111aa)
seg (db=Seg db_id=seg from=36 to=50)
AMDSBA4_123_7
unknown

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comp(5017..5367)
DNA (351bp) protein (117aa)
seg (db=Seg db_id=seg from=94 to=107)
seg (db=Seg db_id=seg from=22 to=36)
coiled-coil (db=Coil db_id=coil from=94 to=115 evalue=NA)
AMDSBA4_123_8
unknown

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comp(5360..5674)
DNA (315bp) protein (105aa)
5360..5674 - ( gc_cont=0.527)
AMDSBA4_123_9
unknown

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comp(5908..6534)
DNA (627bp) protein (209aa)
5908..6534 - ( gc_cont=0.612)
AMDSBA4_123_10
unknown

Not on your lists

comp(6616..7158)
DNA (543bp) protein (181aa)
seg (db=Seg db_id=seg from=56 to=67)
AMDSBA4_123_11
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7329..8057)
DNA (729bp) protein (243aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=46)
Uncharacterized protein {ECO:0000313|EMBL:EOO37270.1}; TaxID=1053246 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus VDM019.
AMDSBA4_123_12
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8272..9129)
DNA (858bp) protein (286aa)
DNA adenine methylase (EC:2.1.1.72)
DNA adenine methylase n=506 Tax=Enterobacteriaceae RepID=DMA_ECO57 (db=UNIREF evalue=1.4e-28 bit_score=132.5 identity=31.8 coverage=91.6083916083916)
seg (db=Seg db_id=seg from=13 to=26)
seg (db=Seg db_id=seg from=34 to=45)
AMDSBA4_123_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10066..10677)
DNA (612bp) protein (204aa)
transposase
Transposase n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I6G2_SULAT (db=UNIREF evalue=9.0e-70 bit_score=268.9 identity=68.3 coverage=97.05882352941177)
(db=HMMPfam db_id=PF07282 from=68 to=137 evalue=3.0e-19 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
Transposase {ECO:0000313|EMBL:AEJ38642.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillus aci
Displaying 13 items

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