ggKbase home page

AMDSBA4_18_39

Organism: S._benefaciens_IM4

near complete RP 45 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 0 / 38
Location: comp(38445..38714)

Top 3 Functional Annotations

Value Algorithm Source
nuclease similarity KEGG
DB: KEGG
  • Identity: 52.9
  • Coverage: 85.0
  • Bit_score: 95
  • Evalue 9.50e-18
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=8 to=80 evalue=1.1e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.10e-12
(db=HMMPfam db_id=PF01541 from=10 to=79 evalue=4.2e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 4.20e-12

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Haloarcula argentinensis → Haloarcula → Halobacteriales → Halobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 270
GTGGACACGACGCTAGAAGAGGCCAGATGGCGAGTTTACGTTATTCGTTGTGGAGATGATACCTTTTATACCGGAATTACTACCAATGTTGAGCGGCGATTGCGACAACATCAGCAGGGAACCGGTGCCAAGTATACCAGAGGTCGGCATCCCTTGCAGTTATGGTGGGTTTCGTCACTGATGAATCATCAACAGGCGTTAGTCCAAGAGTGGCAGATAAAGCAGTGGAGCCATGCGGAAAAGGAGGCGCTGCAAAATGGTTCAAGATAA
PROTEIN sequence
Length: 90
VDTTLEEARWRVYVIRCGDDTFYTGITTNVERRLRQHQQGTGAKYTRGRHPLQLWWVSSLMNHQQALVQEWQIKQWSHAEKEALQNGSR*