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AMDSBA4_53_30

Organism: S._benefaciens_IM4

near complete RP 45 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 0 / 38
Location: comp(35046..35663)

Top 3 Functional Annotations

Value Algorithm Source
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=46 to=78 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 0.0
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=19 to=177 evalue=4.1e-33 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 4.10e-33
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=111 evalue=4.5e-18 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 4.50e-18

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Taxonomy

Meiothermus silvanus → Meiothermus → Thermales → Deinococci → Deinococcus-Thermus → Bacteria

Sequences

DNA sequence
Length: 618
ATGGACTATCCCTCCGATAACGAATTGATGATAGGTATTGCCGAACATCATGCCCAATCCTTTGAAATTCTTTATGCGCGTTATGCACCGCGCCTTTTAGGATTTATCCAGCACATTCTTCCTGATCGTCATGAATCCGAAGACGTACTGCAAACCGTATTTCTCTACGTATGGCAACATCCCAGAGTTTATCGGCCGCAATCCGGAACGGTGGCAGCTTTTTTGTTTCAGGTAGCAAAAAGTCGAACCATTGATTTTCTAAGAAAAAATCGACGACGGTGGGAGGTCACCGCCTCCGAGGCAACTATCGATGATGAAAACCTCAGGGCACCAAGTGAAGAAGCCTTAGTCGACAGCAGGATTCAAGTCGAGCAATCATTAGACATCTTGAGTCGTGAAGAGCGACTGGCCATTGAACTCATGTTGTGGTACGGATTTACCCAAAATGACGTTGCCAAGATCACAAAACGTCCTTTAGGCACCGTAAAAAGCTGGGTTCGCCGAGGGCTCATCAAGCTTAGAAGGCACTATGGTACGGAGTGCGATACCGATGTGGCAATATCACGGCTCCACCACCATAAAGAAGACCAAACCTTGATCAAGGAGGGCCGGGAATGA
PROTEIN sequence
Length: 206
MDYPSDNELMIGIAEHHAQSFEILYARYAPRLLGFIQHILPDRHESEDVLQTVFLYVWQHPRVYRPQSGTVAAFLFQVAKSRTIDFLRKNRRRWEVTASEATIDDENLRAPSEEALVDSRIQVEQSLDILSREERLAIELMLWYGFTQNDVAKITKRPLGTVKSWVRRGLIKLRRHYGTECDTDVAISRLHHHKEDQTLIKEGRE*