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AMDSBA4_53_30 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=46 to=78 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 msv:Mesil_0893
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=19 to=177 evalue=4.1e-33 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 4.10e-33 msv:Mesil_0893
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=111 evalue=4.5e-18 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto iprscan interpro
DB: superfamily
null null null 4.50e-18 msv:Mesil_0893
(db=HMMPfam db_id=PF04542 from=24 to=93 evalue=2.4e-14 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 2.40e-14 msv:Mesil_0893
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=8 to=95 evalue=1.1e-12) iprscan interpro
DB: Gene3D
null null null 1.10e-12 msv:Mesil_0893
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=112 to=179 evalue=2.2e-10 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 2.20e-10 msv:Mesil_0893
(db=HMMPfam db_id=PF08281 from=122 to=173 evalue=4.6e-08 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 4.60e-08 msv:Mesil_0893
ECF subfamily RNA polymerase sigma-24 subunit KEGG
DB: KEGG
33.9 180.0 103 8.10e-20 msv:Mesil_0893
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADH62805.1}; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermu UNIPROT
DB: UniProtKB
33.9 180.0 103 4.00e-19 D7BC09_MEISD
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BC09_MEISD similarity UNIREF
DB: UNIREF90
33.9 null 102 1.20e-19 msv:Mesil_0893