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AMDSBA4_53

Alias: AMDSBA4_C52

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA4_53_1
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..252
-----------------
DNA (252bp)
protein (84aa)
acyl-CoA synthetase
ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBER (db=HMMPanther db_id=PTHR11968 from=1 to=78 evalue=9.2e-25)
LONG-CHAIN-FATTY-ACID--COA LIGASE (db=HMMPanther db_id=PTHR11968:SF44 from=1 to=78 evalue=9.2e-25)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=1 to=76 evalue=8.3e-20)
AMDSBA4_53_2
unknown

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comp(249..593)
-----------------
DNA (345bp)
protein (115aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
AMDSBA4_53_3
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1252..2208
-----------------
DNA (957bp)
protein (319aa)
molecular chaperone GroES
Putative chlorophyll synthesis pathway protein BchC n=1 Tax=Paenibacillus sp. HGF5 RepID=F3MII5_9BACL (db=UNIREF evalue=1.9e-90 bit_score=338.2 identity=52.7 coverage=98.43260188087774)
seg (db=Seg db_id=seg from=151 to=163)
AMDSBA4_53_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2266..3618
-----------------
DNA (1353bp)
protein (451aa)
broad-specificity cellobiase (EC:3.2.1.21)
broad-specificity cellobiase (EC:3.2.1.21)
Beta-glucosidase A n=1 Tax=uncultured bacterium RepID=C5JB25_9BACT (db=UNIREF evalue=9.8e-101 bit_score=372.9 identity=44.5 coverage=96.89578713968959)
GLYCOSYL_HYDROL_F1_1 (db=PatternScan db_id=PS00572 from=353 to=361 evalue=0.0 interpro_id=IPR018120 interpro_description=Glycoside hydrolase, family 1, active site GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA4_53_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3611..5290)
-----------------
DNA (1680bp)
protein (560aa)
cysteine ABC transporter ATP-binding protein/permease (EC:3.6.3.44) rbh
Macrolide export ATP-binding/permease protein MacB n=16 Tax=Pseudomonas RepID=MACB_PSEAB (db=UNIREF evalue=7.1e-16 bit_score=91.3 identity=30.1 coverage=36.25)
seg (db=Seg db_id=seg from=156 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=126 to=148)
AMDSBA4_53_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5274..7025)
-----------------
DNA (1752bp)
protein (584aa)
cysteine ABC transporter ATP-binding protein/permease (EC:3.6.3.44) rbh
cysteine ABC transporter ATP-binding protein/permease (EC:3.6.3.44) rbh
Fused ATPase and permease components of ABC transport system n=2 Tax=Amycolatopsis mediterranei RepID=G0G081_AMYMD (db=UNIREF evalue=1.4e-94 bit_score=352.8 identity=37.2 coverage=91.95205479452055)
transmembrane_regions (db=TMHMM db_id=tmhmm from=237 to=259)
AMDSBA4_53_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7309..8700
-----------------
DNA (1392bp)
protein (464aa)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-) rbh
Cytochrome d ubiquinol oxidase, subunit I n=9 Tax=Lactobacillus reuteri RepID=C0YWT5_LACRE (db=UNIREF evalue=1.1e-118 bit_score=432.6 identity=47.8 coverage=96.76724137931035)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=91 to=105)
AMDSBA4_53_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8770..9777
-----------------
DNA (1008bp)
protein (336aa)
cytochrome d ubiquinol oxidase, subunit II rbh
cytochrome d ubiquinol oxidase, subunit II rbh
Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Sulfobacillus acidophilus RepID=G8TSC1_9FIRM (db=UNIREF evalue=1.5e-138 bit_score=498.0 identity=71.0 coverage=99.40476190476191)
transmembrane_regions (db=TMHMM db_id=tmhmm from=222 to=244)
AMDSBA4_53_9
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10121..11164)
-----------------
DNA (1044bp)
protein (348aa)
Putative uncharacterized protein n=2 Tax=Bacillus cereus RepID=C2Z8I4_BACCE (db=UNIREF evalue=1.5e-19 bit_score=102.8 identity=26.4 coverage=82.47126436781609)
hypothetical protein
(db=HMMPfam db_id=PF12395 from=228 to=340 evalue=3.3e-21 interpro_id=IPR022123 interpro_description=Protein of unknown function DUF3658)
(db=HMMPfam db_id=PF08874 from=101 to=198 evalue=1.8e-10 interpro_id=IPR014973 interpro_description=Protein of unknown function DUF1835)
AMDSBA4_53_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11781..13163
-----------------
DNA (1383bp)
protein (461aa)
GAF sensor signal transduction histidine kinase rbh
Two component sensor (Fragment) n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H5X0_STRPR (db=UNIREF evalue=3.4e-24 bit_score=118.6 identity=38.0 coverage=37.960954446854664)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
coiled-coil (db=Coil db_id=coil from=69 to=90 evalue=NA)
AMDSBA4_53_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13190..13846
-----------------
DNA (657bp)
protein (219aa)
LuxR family two component transcriptional regulator
LuxR family two component transcriptional regulator
Two component transcriptional regulator, LuxR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TYA3_9FIRM (db=UNIREF evalue=3.1e-84 bit_score=317.0 identity=75.4 coverage=95.8904109589041)
seg (db=Seg db_id=seg from=52 to=63)
AMDSBA4_53_12
unknown

Not on your lists

comp(13847..13960)
-----------------
DNA (114bp)
protein (38aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
AMDSBA4_53_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14243..15841
-----------------
DNA (1599bp)
protein (533aa)
GerA spore germination protein rbh
GerA spore germination protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTF2_9FIRM (db=UNIREF evalue=2.6e-148 bit_score=531.2 identity=54.1 coverage=88.93058161350844)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=318 to=335)
AMDSBA4_53_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15838..16932
-----------------
DNA (1095bp)
protein (365aa)
hypothetical protein rbh
hypothetical protein rbh
Spore germination protein, GerC family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7S5_SULAT (db=UNIREF evalue=3.7e-90 bit_score=337.4 identity=47.3 coverage=96.7123287671233)
AMDSBA4_53_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16989..18044
-----------------
DNA (1056bp)
protein (352aa)
hypothetical protein rbh
Spore germination protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTF0_9FIRM (db=UNIREF evalue=5.0e-52 bit_score=210.7 identity=34.0 coverage=98.86363636363636)
transmembrane_regions (db=TMHMM db_id=tmhmm from=292 to=314)
transmembrane_regions (db=TMHMM db_id=tmhmm from=324 to=343)
AMDSBA4_53_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18041..19507
-----------------
DNA (1467bp)
protein (489aa)
ferredoxin-dependent glutamate synthase rbh
Glutamate synthase, domain 2 with rubredoxin n=3 Tax=Methanobrevibacter smithii RepID=A5UJ54_METS3 (db=UNIREF evalue=2.4e-36 bit_score=159.1 identity=28.1 coverage=79.34560327198365)
seg (db=Seg db_id=seg from=344 to=357)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA4_53_17
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19718..20983)
-----------------
DNA (1266bp)
protein (422aa)
NADH dehydrogenase (EC:1.6.99.3)
NADH dehydrogenase (EC:1.6.99.3)
Sulfide-quinone reductase, putative n=2 Tax=Acidithiobacillus caldus RepID=C6NWI5_9GAMM (db=UNIREF evalue=2.0e-156 bit_score=557.8 identity=61.2 coverage=99.52606635071089)
AMDSBA4_53_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21155..22549
-----------------
DNA (1395bp)
protein (465aa)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-)
Cytochrome bd quinol oxidase subunit 1 apoprotein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG0_9FIRM (db=UNIREF evalue=3.2e-179 bit_score=633.6 identity=65.8 coverage=99.35483870967742)
transmembrane_regions (db=TMHMM db_id=tmhmm from=363 to=385)
seg (db=Seg db_id=seg from=91 to=105)
AMDSBA4_53_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22624..23637
-----------------
DNA (1014bp)
protein (338aa)
cydB; cytochrome d ubiquinol oxidase subunit II rbh
Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Megamonas RepID=H3KAT0_9FIRM (db=UNIREF evalue=1.9e-88 bit_score=331.6 identity=49.3 coverage=98.22485207100591)
transmembrane_regions (db=TMHMM db_id=tmhmm from=228 to=245)
transmembrane_regions (db=TMHMM db_id=tmhmm from=252 to=274)
AMDSBA4_53_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23669..24823)
-----------------
DNA (1155bp)
protein (385aa)
sulfide-quinone oxidoreductase (EC:1.8.5.-) rbh
Sulfide-quinone oxidoreductase n=2 Tax=Sulfobacillus acidophilus RepID=G8TTV1_9FIRM (db=UNIREF evalue=1.1e-129 bit_score=468.8 identity=57.3 coverage=99.22077922077922)
NADH DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR22915 from=1 to=342 evalue=2.0e-29)
no description (db=Gene3D db_id=G3DSA:3.50.50.60 from=2 to=313 evalue=2.4e-29)
AMDSBA4_53_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24937..26118)
-----------------
DNA (1182bp)
protein (394aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Sulfobacillus acidophilus RepID=G8U0W2_9FIRM (db=UNIREF evalue=3.4e-113 bit_score=414.1 identity=47.4 coverage=98.73096446700508)
AMDSBA4_53_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26323..27681
-----------------
DNA (1359bp)
protein (453aa)
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TRW3_9CHLR (db=UNIREF evalue=1.4e-102 bit_score=379.0 identity=44.2 coverage=93.81898454746137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=339 to=361)
AMDSBA4_53_23
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27678..28265
-----------------
DNA (588bp)
protein (196aa)
seg (db=Seg db_id=seg from=68 to=81)
seg (db=Seg db_id=seg from=165 to=182)
AMP_BINDING (db=PatternScan db_id=PS00455 from=148 to=159 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=3 to=178 evalue=6.6e-22)
AMDSBA4_53_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28271..29089
-----------------
DNA (819bp)
protein (273aa)
AMP-dependent synthetase and ligase
Acetyl-CoA synthetase n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VFY2_9PROT (db=UNIREF evalue=1.4e-09 bit_score=69.3 identity=27.5 coverage=70.32967032967034)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=1 to=271 evalue=3.0e-75)
ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBER (db=HMMPanther db_id=PTHR11968 from=1 to=272 evalue=1.7e-63)
AMDSBA4_53_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29086..30243
-----------------
DNA (1158bp)
protein (386aa)
acyltransferase 3
acyltransferase 3
Acyltransferase 3 n=2 Tax=Sulfobacillus acidophilus RepID=G8TSC6_9FIRM (db=UNIREF evalue=7.9e-91 bit_score=339.7 identity=48.0 coverage=94.30051813471503)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=108)
AMDSBA4_53_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30260..30799
-----------------
DNA (540bp)
protein (180aa)
seg (db=Seg db_id=seg from=90 to=103)
coiled-coil (db=Coil db_id=coil from=10 to=31 evalue=NA)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=22 to=175 evalue=6.9e-29 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=16 to=90 evalue=4.6e-18 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto
AMDSBA4_53_27
unknown

Not on your lists

30796..32238
-----------------
DNA (1443bp)
protein (481aa)
seg (db=Seg db_id=seg from=130 to=139)
seg (db=Seg db_id=seg from=44 to=55)
AMDSBA4_53_28
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

32373..34379
-----------------
DNA (2007bp)
protein (669aa)
SMP-30/Gluconolaconase/LRE-like region
seg (db=Seg db_id=seg from=8 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=223 to=239)
AMDSBA4_53_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34435..35049)
-----------------
DNA (615bp)
protein (205aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ43_9FIRM (db=UNIREF evalue=8.6e-12 bit_score=76.3 identity=28.8 coverage=97.5609756097561)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=87)
(db=HMMPfam db_id=PF10099 from=61 to=201 evalue=9.5e-10 interpro_id=IPR018764 interpro_description=Anti-sigma K factor RskA GO=Cellular Component: plasma membrane (GO:0005886), Cellular Component: integral to membrane (GO:0016021))
AMDSBA4_53_30
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(35046..35663)
-----------------
DNA (618bp)
protein (206aa)
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=46 to=78 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=19 to=177 evalue=4.1e-33 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=111 evalue=4.5e-18 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto
(db=HMMPfam db_id=PF04542 from=24 to=93 evalue=2.4e-14 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Displaying items 1-30 of 37 in total

View Taxonomy