ggKbase home page

AMDSBA5_1

Alias: AMDSBA5_C0

Search features with annotation key words

Displaying items 31-60 of 316 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_1_31
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30523..31794)
DNA (1272bp) protein (424aa)
cinA; competence-damage inducible protein
Putative competence-damage inducible protein n=31 Tax=Listeria RepID=CINA_LISMC (db=UNIREF evalue=1.3e-46 bit_score=193.0 identity=32.0 coverage=94.5754716981132)
FAD SYNTHETASE-RELATED (FMN ADENYLYLTRANSFERASE) (db=HMMPanther db_id=PTHR23293 from=5 to=85 evalue=2.7e-10)
Competence protein CinA (db=HMMPIR db_id=PIRSF006728 from=4 to=411 evalue=2.3e-99 interpro_id=IPR008135 interpro_description=Competence-induced protein CinA)
AMDSBA5_1_32
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31924..33393)
DNA (1470bp) protein (490aa)
Microtubule-severing ATPase (EC:3.6.4.3) rbh
Microtubule-severing ATPase (EC:3.6.4.3) rbh
AAA-type ATPase (Cell division control protein homolog) n=1 Tax=Halobacterium salinarum R1 RepID=B0RA56_HALS3 (db=UNIREF evalue=4.4e-30 bit_score=138.3 identity=31.4 coverage=62.244897959183675)
seg (db=Seg db_id=seg from=27 to=35)
AMDSBA5_1_33
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33390..33911)
DNA (522bp) protein (174aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0Q0_9FIRM (db=UNIREF evalue=7.5e-41 bit_score=172.6 identity=47.6 coverage=97.12643678160919)
seg (db=Seg db_id=seg from=9 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
AMDSBA5_1_34
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(34052..34558)
DNA (507bp) protein (169aa)
Probable cardiolipin synthase n=8 Tax=Sophophora RepID=CRLS1_DROME (db=UNIREF evalue=5.1e-10 bit_score=70.1 identity=28.1 coverage=94.0828402366864)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=72 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
AMDSBA5_1_35
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34555..35871)
DNA (1317bp) protein (439aa)
ribosomal protein S12 methylthiotransferase rimO
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Dechloromonas aromatica RCB RepID=RIMO_DECAR (db=UNIREF evalue=2.4e-75 bit_score=288.5 identity=36.9 coverage=97.9498861047836)
MTTASE_RADICAL (db=PatternScan db_id=PS01278 from=149 to=169 evalue=0.0 interpro_id=IPR020612 interpro_description=Methylthiotransferase, conserved site GO=Cellular Component: cellular_component (GO:0005575), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
TIGR01125: MiaB-like tRNA modifying enzyme (db=HMMTigr db_id=TIGR01125 from=4 to=434 evalue=1.8e-182 interpro_id=IPR005840 interpro_description=Ribosomal protein S12 methylthiotransferase RimO GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: transferase activity (GO:0016740), Biological Process: peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid (GO:0018339), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
AMDSBA5_1_36
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35932..36792
DNA (861bp) protein (287aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=45 to=282 evalue=1.2e-54 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
(db=HMMPfam db_id=PF01522 from=88 to=209 evalue=2.1e-30 interpro_id=IPR002509 interpro_description=Polysaccharide deacetylase GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
polysaccharide deacetylase
AMDSBA5_1_37
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36776..37945)
DNA (1170bp) protein (390aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMK4_9FIRM (db=UNIREF evalue=2.1e-67 bit_score=261.9 identity=46.8 coverage=78.2051282051282)
seg (db=Seg db_id=seg from=27 to=39)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=34 to=283 evalue=3.9e-80 interpro_id=IPR012338 interpro_description=Beta-lactamase/transpeptidase-like)
AMDSBA5_1_38
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38004..38897)
DNA (894bp) protein (298aa)
seg (db=Seg db_id=seg from=177 to=198)
seg (db=Seg db_id=seg from=160 to=171)
seg (db=Seg db_id=seg from=140 to=155)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=158)
AMDSBA5_1_39
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38985..40277)
DNA (1293bp) protein (431aa)
asnS; asparaginyl-tRNA synthetase rbh
asnS; asparaginyl-tRNA synthetase rbh
Asparagine--tRNA ligase n=7 Tax=Geobacillus RepID=SYN_GEOTN (db=UNIREF evalue=1.3e-155 bit_score=555.1 identity=61.3 coverage=99.07192575406032)
AMDSBA5_1_40
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40283..41461)
DNA (1179bp) protein (393aa)
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase, putative n=3 Tax=Coccidioides posadasii RepID=C5P1Z8_COCP7 (db=UNIREF evalue=4.6e-46 bit_score=191.0 identity=30.4 coverage=92.1119592875318)
seg (db=Seg db_id=seg from=248 to=261)
ACYL_COA_DH_1 (db=PatternScan db_id=PS00072 from=127 to=139 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_1_41
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41738..42361
DNA (624bp) protein (208aa)
peptidase S16 lon domain-containing protein
Peptidase S16 lon domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0Q8_9FIRM (db=UNIREF evalue=2.8e-34 bit_score=151.0 identity=40.3 coverage=92.78846153846155)
seg (db=Seg db_id=seg from=176 to=187)
PUA domain-like (db=superfamily db_id=SSF88697 from=8 to=196 evalue=2.2e-31 interpro_id=IPR015947 interpro_description=PUA-like domain)
AMDSBA5_1_42
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42374..43738)
DNA (1365bp) protein (455aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0Q9_9FIRM (db=UNIREF evalue=2.2e-63 bit_score=248.8 identity=31.9 coverage=96.04395604395604)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I608_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ39850.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA5_1_43
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

43878..45671
DNA (1794bp) protein (598aa)
PGBD-like (db=superfamily db_id=SSF47090 from=181 to=251 evalue=7.3e-18 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:1.10.101.10 from=181 to=251 evalue=2.9e-15 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
(db=HMMPfam db_id=PF01471 from=202 to=251 evalue=3.9e-15 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
PGBD-like (db=superfamily db_id=SSF47090 from=100 to=179 evalue=2.4e-12 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
AMDSBA5_1_44
Bacillus subterraneus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(45691..46464)
DNA (774bp) protein (258aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermincola potens JR RepID=D5XBL5_THEPJ (db=UNIREF evalue=3.7e-52 bit_score=210.7 identity=47.2 coverage=90.69767441860465)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=57)
seg (db=Seg db_id=seg from=94 to=115)
AMDSBA5_1_45
Halobacillus karajensis, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(46465..47187)
DNA (723bp) protein (241aa)
ABC-type cobalt transport system, ATP-binding protein n=1 Tax=Haloferax mediterranei ATCC 33500 RepID=I3R233_HALME (db=UNIREF evalue=1.9e-10 bit_score=72.0 identity=24.9 coverage=87.13692946058092)
seg (db=Seg db_id=seg from=47 to=58)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=4 to=225 evalue=1.4e-60)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=20 to=217 evalue=5.2e-56)
AMDSBA5_1_46
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

47362..47757
DNA (396bp) protein (132aa)
hypothetical protein
(db=HMMPfam db_id=PF10007 from=18 to=119 evalue=3.2e-11 interpro_id=IPR019254 interpro_description=Protein of unknown function DUF2250)
Putative uncharacterized protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KN95_ARCVS
Putative uncharacterized protein {ECO:0000313|EMBL:AEA46196.1}; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus ve
AMDSBA5_1_47
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(47741..48505)
DNA (765bp) protein (255aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FB94_9BURK (db=UNIREF evalue=2.5e-45 bit_score=188.0 identity=40.4 coverage=97.25490196078431)
seg (db=Seg db_id=seg from=81 to=95)
(db=HMMPfam db_id=PF11251 from=17 to=246 evalue=1.2e-84 interpro_id=IPR024423 interpro_description=Protein of unknown function DUF3050)
AMDSBA5_1_48
Acinetobacter sp. ETR1, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48605..49306
DNA (702bp) protein (234aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P3C7_9RHOB (db=UNIREF evalue=9.8e-36 bit_score=156.0 identity=34.5 coverage=96.15384615384616)
(db=HMMPfam db_id=PF09859 from=64 to=232 evalue=2.0e-46 interpro_id=IPR018655 interpro_description=Protein of unknown function DUF2086)
FE2OG_OXY (db=ProfileScan db_id=PS51471 from=119 to=233 evalue=9.84 interpro_id=IPR005123 interpro_description=Oxoglutarate/iron-dependent oxygenase GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_1_49
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

49303..50121
DNA (819bp) protein (273aa)
transcriptional regulator TrmB
Transcriptional regulator, TrmB n=2 Tax=Sulfobacillus acidophilus RepID=G8TWY9_9FIRM (db=UNIREF evalue=4.5e-48 bit_score=197.2 identity=41.7 coverage=83.15018315018315)
(db=HMMPfam db_id=PF01978 from=39 to=107 evalue=1.4e-14 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=27 to=131 evalue=1.4e-08)
AMDSBA5_1_50
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50118..51119)
DNA (1002bp) protein (334aa)
Peptidase A4 family
Putative uncharacterized protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=B7DSM6_9BACL (db=UNIREF evalue=6.3e-36 bit_score=157.1 identity=37.7 coverage=81.1377245508982)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=57 to=257 evalue=5.1e-33 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
(db=HMMPfam db_id=PF01828 from=60 to=232 evalue=6.2e-18 interpro_id=IPR000250 interpro_description=Peptidase G1 GO=Molecular Function: aspartic-type endopeptidase activity (GO:0004190), Biological Process: proteolysis (GO:0006508))
AMDSBA5_1_51
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51230..52243)
DNA (1014bp) protein (338aa)
esterase
Enterochelin esterase and related enzyme n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFL1_9RHOB (db=UNIREF evalue=1.7e-57 bit_score=228.8 identity=39.8 coverage=94.0828402366864)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=30 to=314 evalue=4.3e-26)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=2 to=335 evalue=4.2e-25)
AMDSBA5_1_52
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(52224..52679)
DNA (456bp) protein (152aa)
TPR-like (db=superfamily db_id=SSF48452 from=4 to=142 evalue=3.0e-15)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=8 to=124 evalue=2.1e-13 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=7 to=72 evalue=3.1e-06)
TPR DOMAIN PROTEIN (db=HMMPanther db_id=PTHR23083:SF24 from=7 to=72 evalue=3.1e-06)
AMDSBA5_1_53
unknown

Not on your lists

comp(52712..53092)
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=5.0)
AMDSBA5_1_54
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

53349..54272
DNA (924bp) protein (308aa)
ribokinase
Ribokinase n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YYI2_LISDA (db=UNIREF evalue=1.4e-18 bit_score=99.4 identity=26.5 coverage=94.48051948051948)
seg (db=Seg db_id=seg from=2 to=18)
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=298 evalue=1.4e-66)
AMDSBA5_1_55
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(54269..54925)
DNA (657bp) protein (219aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Actinoplanes missouriensis 431 RepID=I0H5G7_ACTM4 (db=UNIREF evalue=6.8e-31 bit_score=139.8 identity=35.5 coverage=87.21461187214612)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
AMDSBA5_1_56
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

55090..55593
DNA (504bp) protein (168aa)
ArgA; acetyltransferase (EC:2.3.1.1)
GCN5-related N-acetyltransferase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLR7_9FIRM (db=UNIREF evalue=2.2e-21 bit_score=107.8 identity=37.8 coverage=87.5)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=151 evalue=1.1e-26 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=1 to=121 evalue=3.4e-13 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
AMDSBA5_1_57
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55743..55949)
DNA (207bp) protein (69aa)
HMA_1 (db=PatternScan db_id=PS01047 from=8 to=37 evalue=0.0 interpro_id=IPR017969 interpro_description=Heavy-metal-associated, conserved site GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
HMA, heavy metal-associated domain (db=superfamily db_id=SSF55008 from=1 to=68 evalue=4.4e-20 interpro_id=IPR006121 interpro_description=Heavy metal-associated domain, HMA GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
(db=HMMPfam db_id=PF00403 from=8 to=66 evalue=2.7e-17 interpro_id=IPR006121 interpro_description=Heavy metal-associated domain, HMA GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
no description (db=Gene3D db_id=G3DSA:3.30.70.100 from=1 to=67 evalue=1.9e-16)
AMDSBA5_1_58
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(56021..58447)
DNA (2427bp) protein (809aa)
Copper-exporting P-type ATPase A n=170 Tax=Staphylococcus aureus RepID=COPA_STAA1 (db=UNIREF evalue=2.0e-160 bit_score=572.0 identity=40.8 coverage=98.02224969097651)
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=186)
transmembrane_regions (db=TMHMM db_id=tmhmm from=446 to=468)
AMDSBA5_1_59
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

58722..60302
DNA (1581bp) protein (527aa)
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G9V7_CHLAD (db=UNIREF evalue=3.0e-85 bit_score=321.6 identity=36.9 coverage=98.4819734345351)
AMDSBA5_1_60
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(60362..61180)
DNA (819bp) protein (273aa)
murI; glutamate racemase
Glutamate racemase n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=MURI_SYMTH (db=UNIREF evalue=1.1e-57 bit_score=229.2 identity=45.4 coverage=95.97069597069597)
seg (db=Seg db_id=seg from=51 to=61)
seg (db=Seg db_id=seg from=68 to=86)
Displaying items 31-60 of 316 in total

View Taxonomy