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AMDSBA5_1

Alias: AMDSBA5_C0

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Displaying items 1-30 of 316 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_1_1
unknown

Not on your lists

comp(2..82)
DNA (81bp) protein (27aa)
2..82 - ( gc_cont=0.481)
AMDSBA5_1_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(201..524)
DNA (324bp) protein (108aa)
Sterol-binding domain-containing protein
NONSPECIFIC LIPID-TRANSFER PROTEIN (STEROL CARRIER PROTEIN X) (db=HMMPanther db_id=PTHR19410:SF115 from=62 to=95 evalue=1.4e-07)
Sterol carrier protein, SCP (db=superfamily db_id=SSF55718 from=1 to=106 evalue=1.1e-23 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
(db=HMMPfam db_id=PF02036 from=7 to=106 evalue=1.8e-22 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
AMDSBA5_1_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(573..1712)
DNA (1140bp) protein (380aa)
acyl-CoA dehydrogenase
seg (db=Seg db_id=seg from=82 to=96)
seg (db=Seg db_id=seg from=248 to=259)
ACYL_COA_DH_1 (db=PatternScan db_id=PS00072 from=126 to=138 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_1_4
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1783..3456)
DNA (1674bp) protein (558aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Nitrosococcus RepID=B6C1P2_9GAMM (db=UNIREF evalue=8.5e-54 bit_score=217.2 identity=29.9 coverage=93.9068100358423)
coiled-coil (db=Coil db_id=coil from=192 to=213 evalue=NA)
seg (db=Seg db_id=seg from=200 to=209)
AMDSBA5_1_5
GWC2_SYX_53_9_curated, Bacteria

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comp(3524..4561)
DNA (1038bp) protein (346aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=42)
seg (db=Seg db_id=seg from=146 to=169)
seg (db=Seg db_id=seg from=128 to=143)
AMDSBA5_1_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4579..5169
DNA (591bp) protein (197aa)
SOS-response transcriptional repressor, LexA
LexA repressor n=2 Tax=Sulfobacillus acidophilus RepID=G8U080_9FIRM (db=UNIREF evalue=5.9e-58 bit_score=229.6 identity=59.6 coverage=97.46192893401016)
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=1 to=196 evalue=3.2e-52 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=81 to=194 evalue=2.2e-36 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
AMDSBA5_1_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5134..6351)
DNA (1218bp) protein (406aa)
aluminum resistance family protein
aluminum resistance family protein
Uncharacterized protein YnbB n=5 Tax=Paenibacillus RepID=G0VZ43_PAEPO (db=UNIREF evalue=2.6e-84 bit_score=318.2 identity=45.2 coverage=93.59605911330048)
AMDSBA5_1_8
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6440..7051)
DNA (612bp) protein (204aa)
GTP-binding protein HSR1-like protein
GTP-binding protein HSR1-related protein n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WPT9_BACT2 (db=UNIREF evalue=2.0e-16 bit_score=91.7 identity=28.0 coverage=93.13725490196079)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=192 evalue=1.2e-17)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=203 evalue=5.7e-09)
AMDSBA5_1_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7051..8253)
DNA (1203bp) protein (401aa)
AAA ATPase
Stage V sporulation protein K n=1 Tax=Bacillus pseudofirmus OF4 RepID=D3FRG7_BACPE (db=UNIREF evalue=1.3e-56 bit_score=226.1 identity=44.7 coverage=64.58852867830423)
STAGE V SPORULATION PROTEIN K (db=HMMPanther db_id=PTHR18958:SF15 from=193 to=344 evalue=1.1e-76)
ANKYRIN REPEAT-CONTAINING (db=HMMPanther db_id=PTHR18958 from=193 to=344 evalue=1.1e-76)
AMDSBA5_1_10
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(8250..10262)
DNA (2013bp) protein (671aa)
prolyl oligopeptidase (EC:3.4.21.26)
Prolyl endopeptidase n=7 Tax=Aeromonas RepID=PPCE_AERHY (db=UNIREF evalue=8.3e-80 bit_score=303.9 identity=29.9 coverage=98.95678092399403)
PROLYL ENDOPEPTIDASE (PROLYL OLIGOPEPTIDASE) (db=HMMPanther db_id=PTHR11757:SF2 from=10 to=670 evalue=1.7e-110)
AMDSBA5_1_11
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10322..11530
DNA (1209bp) protein (403aa)
transporter, major facilitator family
Major facilitator superfamily MFS_1 n=1 Tax=Ethanoligenens harbinense YUAN-3 RepID=E6U3M3_ETHHY (db=UNIREF evalue=9.0e-13 bit_score=80.5 identity=24.9 coverage=77.66749379652606)
seg (db=Seg db_id=seg from=102 to=123)
seg (db=Seg db_id=seg from=276 to=291)
AMDSBA5_1_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11601..12545
DNA (945bp) protein (315aa)
cwlJ; cell wall hydrolase SleB
Cell wall hydrolase SleB n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7Q4_PAESJ (db=UNIREF evalue=9.8e-23 bit_score=113.2 identity=43.3 coverage=44.761904761904766)
seg (db=Seg db_id=seg from=182 to=198)
PEPTIDASE-RELATED (db=HMMPanther db_id=PTHR21666 from=197 to=304 evalue=5.6e-25)
AMDSBA5_1_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12542..13489)
DNA (948bp) protein (316aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
tRNA isopentenyltransferase MiaA n=1 Tax=Terriglobus roseus DSM 18391 RepID=I3ZMC1_9BACT (db=UNIREF evalue=1.9e-42 bit_score=178.7 identity=36.6 coverage=94.62025316455697)
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=9 to=294 evalue=3.0e-78 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase GO=Biological Process: tRNA processing (GO:0008033))
TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE (db=HMMPanther db_id=PTHR11088:SF21 from=40 to=292 evalue=4.2e-69)
AMDSBA5_1_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13473..15200)
DNA (1728bp) protein (576aa)
DNA mismatch repair protein MutL
DNA mismatch repair protein MutL
DNA mismatch repair protein mutL n=2 Tax=Sulfobacillus acidophilus RepID=G8U086_9FIRM (db=UNIREF evalue=9.8e-162 bit_score=575.9 identity=52.6 coverage=99.13194444444444)
seg (db=Seg db_id=seg from=517 to=527)
AMDSBA5_1_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15197..17755)
DNA (2559bp) protein (853aa)
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NSZ4_9FIRM (db=UNIREF evalue=5.2e-143 bit_score=514.2 identity=37.4 coverage=98.4759671746776)
seg (db=Seg db_id=seg from=376 to=388)
AMDSBA5_1_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17752..18507)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U088_9FIRM (db=UNIREF evalue=7.1e-40 bit_score=169.9 identity=37.6 coverage=94.04761904761905)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=108 to=245 evalue=3.2e-11)
no description (db=Gene3D db_id=G3DSA:3.30.420.150 from=107 to=245 evalue=4.5e-09)
(db=HMMPfam db_id=PF02541 from=34 to=139 evalue=6.0e-08 interpro_id=IPR003695 interpro_description=Ppx/GppA phosphatase)
AMDSBA5_1_17
Bacillus sp. JCM 19047, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18588..19115
DNA (528bp) protein (176aa)
transcriptional regulator
Probable transcription repressor NiaR n=5 Tax=Thermotoga RepID=NIAR_THEMA (db=UNIREF evalue=1.6e-27 bit_score=128.3 identity=46.2 coverage=86.93181818181817)
(db=HMMPfam db_id=PF02829 from=73 to=171 evalue=3.2e-26 interpro_id=IPR004173 interpro_description=3H domain GO=Molecular Function: binding (GO:0005488))
Putative transcriptional regulator TM1602, C-terminal domain (db=superfamily db_id=SSF75500 from=66 to=173 evalue=1.3e-25 interpro_id=IPR004173 interpro_description=3H domain GO=Molecular Function: binding (GO:0005488))
AMDSBA5_1_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19166..20404
DNA (1239bp) protein (413aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EFN2_9FIRM (db=UNIREF evalue=4.7e-33 bit_score=147.9 identity=34.4 coverage=65.85956416464892)
seg (db=Seg db_id=seg from=381 to=400)
AMDSBA5_1_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20519..21115
DNA (597bp) protein (199aa)
hypothetical protein
SNARE associated Golgi protein-associated protein n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WR05_BACT2 (db=UNIREF evalue=2.4e-43 bit_score=181.0 identity=46.3 coverage=98.99497487437185)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=50 to=63)
AMDSBA5_1_20
unknown

Not on your lists

comp(21054..21653)
DNA (600bp) protein (200aa)
seg (db=Seg db_id=seg from=34 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
AMDSBA5_1_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21663..22739)
DNA (1077bp) protein (359aa)
glycoside hydrolase family protein
glycoside hydrolase family protein
Glycoside hydrolase family 18 n=2 Tax=Sulfobacillus acidophilus RepID=G8U0N8_9FIRM (db=UNIREF evalue=7.6e-104 bit_score=382.9 identity=54.3 coverage=97.21448467966573)
AMDSBA5_1_22
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22801..23019)
DNA (219bp) protein (73aa)
seg (db=Seg db_id=seg from=23 to=37)
coiled-coil (db=Coil db_id=coil from=48 to=69 evalue=NA)
coiled-coil (db=Coil db_id=coil from=9 to=30 evalue=NA)
Uncharacterized protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I3H9_DESAP
AMDSBA5_1_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23162..24628)
DNA (1467bp) protein (489aa)
pepA; leucyl aminopeptidase
Probable cytosol aminopeptidase 2 n=1 Tax=Saccharomonospora marina XMU15 RepID=H5XA68_9PSEU (db=UNIREF evalue=1.4e-63 bit_score=249.6 identity=37.3 coverage=92.84253578732107)
CYTOSOL_AP (db=PatternScan db_id=PS00631 from=337 to=344 evalue=0.0 interpro_id=IPR000819 interpro_description=Peptidase M17, leucyl aminopeptidase, C-terminal GO=Molecular Function: aminopeptidase activity (GO:0004177), Cellular Component: intracellular (GO:0005622), Biological Process: proteolysis (GO:0006508))
LEUCINE AMINOPEPTIDASE-RELATED (db=HMMPanther db_id=PTHR11963 from=18 to=488 evalue=1.6e-143)
AMDSBA5_1_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24640..25608)
DNA (969bp) protein (323aa)
membrane dipeptidase
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NEA0_EUBSP (db=UNIREF evalue=3.3e-34 bit_score=151.4 identity=29.8 coverage=93.18885448916409)
seg (db=Seg db_id=seg from=142 to=153)
(db=HMMPfam db_id=PF01244 from=15 to=311 evalue=8.9e-84 interpro_id=IPR008257 interpro_description=Peptidase M19, renal dipeptidase GO=Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235), Molecular Function: dipeptidyl-peptidase activity (GO:0008239), Molecular Function: dipeptidase activity (GO:0016805))
AMDSBA5_1_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25623..26354)
DNA (732bp) protein (244aa)
metallophosphoesterase
Putative uncharacterized protein n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YJY2_MOBAS (db=UNIREF evalue=3.4e-47 bit_score=194.1 identity=42.0 coverage=95.49180327868852)
seg (db=Seg db_id=seg from=20 to=30)
no description (db=Gene3D db_id=G3DSA:3.60.21.30 from=1 to=242 evalue=3.4e-83)
AMDSBA5_1_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26444..26956)
DNA (513bp) protein (171aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0P4_9FIRM (db=UNIREF evalue=2.1e-27 bit_score=127.9 identity=43.5 coverage=98.83040935672514)
coiled-coil (db=Coil db_id=coil from=131 to=152 evalue=NA)
seg (db=Seg db_id=seg from=129 to=139)
AMDSBA5_1_27
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(27067..27357)
DNA (291bp) protein (97aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding n=2 Tax=Acidithiobacillus caldus RepID=C6NUQ1_9GAMM (db=UNIREF evalue=5.7e-22 bit_score=109.0 identity=60.8 coverage=80.41237113402062)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=9 to=20 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=2 to=83 evalue=1.5e-22)
AMDSBA5_1_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27360..27833)
DNA (474bp) protein (158aa)
Regulatory protein recX
Regulatory protein recX n=2 Tax=Sulfobacillus acidophilus RepID=G8U0P5_9FIRM (db=UNIREF evalue=6.2e-18 bit_score=96.3 identity=40.1 coverage=88.60759493670885)
(db=HMMPfam db_id=PF02631 from=31 to=145 evalue=7.4e-19 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
RecX (db=HAMAP db_id=MF_01114 from=6 to=152 evalue=11.838 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
AMDSBA5_1_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27814..28851)
DNA (1038bp) protein (346aa)
recA; recA protein
recA; recA protein
Protein RecA n=2 Tax=Acholeplasma laidlawii RepID=RECA_ACHLI (db=UNIREF evalue=8.2e-31 bit_score=140.2 identity=32.9 coverage=95.37572254335261)
seg (db=Seg db_id=seg from=137 to=150)
AMDSBA5_1_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28925..30511)
DNA (1587bp) protein (529aa)
deaD; ATP-dependent RNA helicase
deaD; ATP-dependent RNA helicase
DEAD/DEAH box helicase domain protein n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GGY3_METPE (db=UNIREF evalue=5.3e-146 bit_score=523.5 identity=50.6 coverage=98.10964083175804)
seg (db=Seg db_id=seg from=334 to=349)
Displaying items 1-30 of 316 in total

View Taxonomy