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AMDSBA5_13

Alias: AMDSBA5_C12

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Displaying items 31-50 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_13_31
unknown

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comp(26316..26675)
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=58 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
AMDSBA5_13_32
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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27465..27758
DNA (294bp) protein (98aa)
ferritin/ribonucleotide reductase-like protein
Putative uncharacterized protein n=1 Tax=Methanosalsum zhilinae DSM 4017 RepID=F7XQI2_METZD (db=UNIREF evalue=1.3e-18 bit_score=97.8 identity=52.9 coverage=85.71428571428571)
Ferritin-like (db=superfamily db_id=SSF47240 from=4 to=94 evalue=1.8e-20 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation-reduction process (GO:0055114))
Ferritin/ribonucleotide reductase-like protein n=2 Tax=Acidithiobacillus caldus RepID=F9ZL45_ACICS
AMDSBA5_13_33
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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28020..31055
DNA (3036bp) protein (1012aa)
amylo-alpha-16-glucosidase
Amylo-alpha-1,6-glucosidase (Fragment) n=1 Tax=Streptomyces sp. SPB78 RepID=D9UFB3_9ACTO (db=UNIREF evalue=2.6e-77 bit_score=296.2 identity=42.5 coverage=37.25296442687747)
coiled-coil (db=Coil db_id=coil from=556 to=577 evalue=NA)
HTH_LACI_1 (db=PatternScan db_id=PS00356 from=10 to=28 evalue=0.0 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA5_13_34
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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31121..32392
DNA (1272bp) protein (424aa)
ABC-type sugar transport system, periplasmic component
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KEI5_9FIRM (db=UNIREF evalue=4.1e-16 bit_score=91.7 identity=24.6 coverage=97.87735849056604)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=21 to=417 evalue=6.5e-86)
(db=HMMPfam db_id=PF01547 from=56 to=332 evalue=4.3e-37 interpro_id=IPR006059 interpro_description=Bacterial extracellular solute-binding, family 1 GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
AMDSBA5_13_35
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

32389..33288
DNA (900bp) protein (300aa)
sugar ABC transporter permease
ABC superfamily ATP binding cassette transporter, membrane protein n=1 Tax=Listeria grayi DSM 20601 RepID=D7UW90_LISGR (db=UNIREF evalue=2.6e-49 bit_score=201.4 identity=36.3 coverage=93.66666666666667)
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=290)
transmembrane_regions (db=TMHMM db_id=tmhmm from=239 to=261)
AMDSBA5_13_36
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

33307..34149
DNA (843bp) protein (281aa)
ABC transporter permease
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT28_9BACL (db=UNIREF evalue=3.3e-62 bit_score=244.2 identity=41.6 coverage=94.66192170818505)
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=266)
transmembrane_regions (db=TMHMM db_id=tmhmm from=200 to=222)
AMDSBA5_13_37
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

34178..36379
DNA (2202bp) protein (734aa)
glycogen debranching protein
Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PRE5_KRIFD (db=UNIREF evalue=2.7e-15 bit_score=89.7 identity=27.5 coverage=30.79019073569482)
Six-hairpin glycosidases (db=superfamily db_id=SSF48208 from=232 to=682 evalue=1.3e-36 interpro_id=IPR008928 interpro_description=Six-hairpin glycosidase-like GO=Molecular Function: catalytic activity (GO:0003824))
Glycogen debranching protein {ECO:0000313|EMBL:AKD58734.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
AMDSBA5_13_38
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

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37199..38620
DNA (1422bp) protein (474aa)
peptidase U62 modulator of DNA gyrase
Peptidase U62, modulator of DNA gyrase n=2 Tax=Staphylothermus RepID=A3DP79_STAMF (db=UNIREF evalue=3.2e-49 bit_score=201.8 identity=31.6 coverage=96.20253164556962)
seg (db=Seg db_id=seg from=220 to=231)
Putative modulator of DNA gyrase, PmbA/TldD (db=superfamily db_id=SSF111283 from=1 to=471 evalue=3.4e-100)
AMDSBA5_13_39
S_OP1_64_32, KB1, Bacteria

Not on your lists

38617..39960
DNA (1344bp) protein (448aa)
pmbA/tldD family protein
Peptidase U62, modulator of DNA gyrase n=2 Tax=Desulfurococcus RepID=B8D4Q1_DESK1 (db=UNIREF evalue=2.0e-16 bit_score=92.8 identity=28.4 coverage=57.14285714285714)
seg (db=Seg db_id=seg from=240 to=251)
Putative modulator of DNA gyrase, PmbA/TldD (db=superfamily db_id=SSF111283 from=20 to=444 evalue=4.5e-58)
AMDSBA5_13_40
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40182..41954
DNA (1773bp) protein (591aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1I7_9FIRM (db=UNIREF evalue=2.0e-117 bit_score=428.7 identity=41.9 coverage=95.43147208121827)
seg (db=Seg db_id=seg from=29 to=54)
seg (db=Seg db_id=seg from=158 to=173)
AMDSBA5_13_41
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42033..42956
DNA (924bp) protein (308aa)
ABC transporter
ABC transporter permease protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPE6_9PROT (db=UNIREF evalue=7.3e-39 bit_score=166.8 identity=35.4 coverage=88.63636363636364)
transmembrane_regions (db=TMHMM db_id=tmhmm from=213 to=235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=166)
AMDSBA5_13_42
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42953..43906
DNA (954bp) protein (318aa)
ABC transporter
Probable D,D-dipeptide transport system permease protein ddpB n=331 Tax=Enterobacteriaceae RepID=DDPB_ECOLI (db=UNIREF evalue=1.4e-45 bit_score=189.1 identity=33.4 coverage=92.76729559748428)
transmembrane_regions (db=TMHMM db_id=tmhmm from=284 to=306)
transmembrane_regions (db=TMHMM db_id=tmhmm from=242 to=264)
AMDSBA5_13_43
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

44007..44549
DNA (543bp) protein (181aa)
aspartate racemase
Aspartate racemase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BUH4_9RHIZ (db=UNIREF evalue=3.9e-16 bit_score=90.5 identity=31.7 coverage=95.58011049723757)
seg (db=Seg db_id=seg from=5 to=17)
no description (db=Gene3D db_id=G3DSA:3.40.50.1860 from=2 to=112 evalue=5.1e-26 interpro_id=IPR001920 interpro_description=Asp/Glu racemase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives (GO:0016855))
AMDSBA5_13_44
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

44817..46211
DNA (1395bp) protein (465aa)
leucyl aminopeptidase (EC:3.4.11.1)
Peptidase B n=1 Tax=Serratia symbiotica str. Tucson RepID=E9CL94_9ENTR (db=UNIREF evalue=3.5e-45 bit_score=188.3 identity=35.0 coverage=77.41935483870968)
seg (db=Seg db_id=seg from=436 to=447)
CYTOSOL_AP (db=PatternScan db_id=PS00631 from=307 to=314 evalue=0.0 interpro_id=IPR000819 interpro_description=Peptidase M17, leucyl aminopeptidase, C-terminal GO=Molecular Function: aminopeptidase activity (GO:0004177), Cellular Component: intracellular (GO:0005622), Biological Process: proteolysis (GO:0006508))
AMDSBA5_13_45
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

46474..47061
DNA (588bp) protein (196aa)
GCN5-like N-acetyltransferase
Acetyltransferase n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NXY5_9VIBR (db=UNIREF evalue=9.1e-19 bit_score=99.4 identity=34.6 coverage=79.59183673469387)
seg (db=Seg db_id=seg from=53 to=67)
seg (db=Seg db_id=seg from=68 to=80)
AMDSBA5_13_46
Bacillus thuringiensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

47349..48458
DNA (1110bp) protein (370aa)
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family n=12 Tax=Bacillus cereus group RepID=B5V874_BACCE (db=UNIREF evalue=2.7e-24 bit_score=118.6 identity=26.0 coverage=93.51351351351352)
coiled-coil (db=Coil db_id=coil from=339 to=360 evalue=NA)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=255 to=358 evalue=8.2e-20)
AMDSBA5_13_47
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

48898..49668
DNA (771bp) protein (257aa)
ABC transporter related protein
Putative ABC transporter ATP-binding protein GSU3001 n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YAE2_9DELT (db=UNIREF evalue=3.6e-15 bit_score=87.8 identity=29.1 coverage=82.10116731517509)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=3 to=247 evalue=3.1e-75)
seg (db=Seg db_id=seg from=173 to=184)
AMDSBA5_13_48
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

49675..51342
DNA (1668bp) protein (556aa)
membrane protein
membrane protein
hypothetical protein VspiD_14710 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017443CF (db=UNIREF evalue=1.2e-23 bit_score=117.1 identity=25.2 coverage=89.74820143884892)
transmembrane_regions (db=TMHMM db_id=tmhmm from=265 to=287)
AMDSBA5_13_49
unknown

Not on your lists

52326..53096
DNA (771bp) protein (257aa)
seg (db=Seg db_id=seg from=134 to=145)
AMDSBA5_13_50
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54035..55366
DNA (1332bp) protein (444aa)
hypothetical protein
Two component regulator three Y domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TU43_9FIRM (db=UNIREF evalue=1.0e-49 bit_score=203.4 identity=32.6 coverage=93.69369369369369)
seg (db=Seg db_id=seg from=133 to=158)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Displaying items 31-50 of 50 in total

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