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AMDSBA5_13

Alias: AMDSBA5_C12

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Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_13_1
Muricauda ruestringensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47..1369)
DNA (1323bp) protein (441aa)
seg (db=Seg db_id=seg from=53 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=32)
seg (db=Seg db_id=seg from=95 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=103)
AMDSBA5_13_2
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

1695..2417
DNA (723bp) protein (241aa)
Uncharacterized protein n=3 Tax=Microcystis aeruginosa RepID=I4FHX4_MICAE (db=UNIREF evalue=3.4e-23 bit_score=114.4 identity=29.7 coverage=79.25311203319502)
hypothetical protein
Uncharacterized protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
AMDSBA5_13_3
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2414..3049)
DNA (636bp) protein (212aa)
capsular polysaccharide biosynthesis protein (EC:2.7.10.1)
Putative polysaccharide biosynthesis protein, chain length determination n=2 Tax=Carnobacterium RepID=A8U9F4_9LACT (db=UNIREF evalue=1.1e-20 bit_score=105.9 identity=30.7 coverage=96.22641509433963)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=33 to=210 evalue=1.9e-33)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=35 to=210 evalue=3.4e-25)
AMDSBA5_13_4
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3000..3767)
DNA (768bp) protein (256aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=179)
(db=HMMPfam db_id=PF02706 from=3 to=124 evalue=5.1e-06 interpro_id=IPR003856 interpro_description=Lipopolysaccharide biosynthesis GO=Biological Process: lipopolysaccharide biosynthetic process (GO:0009103), Cellular Component: membrane (GO:0016020))
capsular polysaccharide biosynthesis protein
AMDSBA5_13_5
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

4118..4903
DNA (786bp) protein (262aa)
WecB/TagA/CpsF family glycosyl transferase (EC:2.4.1.187)
Glycosyl transferase, WecB/TagA/CpsF family n=3 Tax=Rhodopseudomonas palustris RepID=E6VE05_RHOPX (db=UNIREF evalue=2.8e-23 bit_score=114.8 identity=35.8 coverage=67.17557251908397)
(db=HMMPfam db_id=PF03808 from=54 to=223 evalue=2.9e-53 interpro_id=IPR004629 interpro_description=Glycosyl transferase WecB/TagA/CpsF GO=Biological Process: biosynthetic process (GO:0009058))
wecB_tagA_cpsF: glycosyl transferase, (db=HMMTigr db_id=TIGR00696 from=53 to=231 evalue=1.1e-35 interpro_id=IPR004629 interpro_description=Glycosyl transferase WecB/TagA/CpsF GO=Biological Process: biosynthetic process (GO:0009058))
AMDSBA5_13_6
Aminomonas paucivorans, Aminomonas, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

4907..5851
DNA (945bp) protein (315aa)
NAD-dependent epimerase/dehydratase
UDP-glucose 4-epimerase n=4 Tax=Thermococcus RepID=B7R0J9_9EURY (db=UNIREF evalue=7.2e-58 bit_score=229.9 identity=42.0 coverage=94.6031746031746)
UDP-GLUCOSE 4-EPIMERASE (db=HMMPanther db_id=PTHR10366:SF45 from=5 to=307 evalue=6.4e-106)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=307 evalue=6.4e-106)
AMDSBA5_13_7
BJP_IG2103_Methanoregula_55_19, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5839..6714
DNA (876bp) protein (292aa)
dTDP-4-dehydrorhamnose reductase
QnlA n=1 Tax=Escherichia coli RepID=A5WZ56_ECOLX (db=UNIREF evalue=1.4e-44 bit_score=185.7 identity=37.5 coverage=94.52054794520548)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=289 evalue=5.0e-48)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=1 to=230 evalue=8.7e-31 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
AMDSBA5_13_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

6948..8006
DNA (1059bp) protein (353aa)
UDP-N-acetylglucosamine 4,6-dehydratase (inverting) (EC:4.2.1.115)
UDP-glucose 4-epimerase n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L0I7_9ACTO (db=UNIREF evalue=2.6e-56 bit_score=224.9 identity=41.6 coverage=96.03399433427762)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=11 to=306 evalue=4.7e-94)
CAPSULAR POLYSACCHARIDE BIOSYNTHESIS PROTEIN (db=HMMPanther db_id=PTHR10366:SF23 from=11 to=306 evalue=4.7e-94)
AMDSBA5_13_9
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

8003..9088
DNA (1086bp) protein (362aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WWX1_BACT2 (db=UNIREF evalue=5.6e-46 bit_score=190.7 identity=36.3 coverage=93.37016574585635)
seg (db=Seg db_id=seg from=319 to=335)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=358 evalue=6.7e-87)
AMDSBA5_13_10
unknown

Not on your lists

9085..10482
DNA (1398bp) protein (466aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=199)
transmembrane_regions (db=TMHMM db_id=tmhmm from=242 to=260)
transmembrane_regions (db=TMHMM db_id=tmhmm from=273 to=292)
transmembrane_regions (db=TMHMM db_id=tmhmm from=383 to=400)
AMDSBA5_13_11
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10479..11684
DNA (1206bp) protein (402aa)
Glycosyl transferases group 1 family protein n=3 Tax=Xanthomonas RepID=H1XH15_9XANT (db=UNIREF evalue=3.0e-08 bit_score=65.5 identity=26.8 coverage=43.28358208955223)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=2 to=371 evalue=3.4e-44)
(db=HMMPfam db_id=PF00534 from=181 to=349 evalue=6.1e-27 interpro_id=IPR001296 interpro_description=Glycosyl transferase, family 1 GO=Biological Process: biosynthetic process (GO:0009058))
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=371 evalue=1.4e-26)
AMDSBA5_13_12
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

11686..12567
DNA (882bp) protein (294aa)
seg (db=Seg db_id=seg from=222 to=233)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=217 evalue=2.8e-34)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=7 to=217 evalue=5.4e-20)
(db=HMMPfam db_id=PF00535 from=8 to=158 evalue=7.7e-20 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
AMDSBA5_13_13
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12560..13651
DNA (1092bp) protein (364aa)
group 1 glycosyl transferase
Glycosyl transferase, group 1 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WV46_HALHL (db=UNIREF evalue=2.6e-11 bit_score=75.5 identity=25.5 coverage=92.03296703296702)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=6 to=336 evalue=1.8e-37)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=7 to=338 evalue=1.6e-24)
AMDSBA5_13_14
unknown

Not on your lists

13614..14156
DNA (543bp) protein (181aa)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=14 to=180 evalue=1.4e-11)
AMDSBA5_13_15
R_PER_ii_51_15, PER-ii, Bacteria

Not on your lists

comp(14214..14978)
DNA (765bp) protein (255aa)
seg (db=Seg db_id=seg from=178 to=193)
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR13504 from=22 to=238 evalue=1.7e-48)
gb def: Hypothetical protein MA2133 (db=HMMPanther db_id=PTHR13504:SF10 from=22 to=238 evalue=1.7e-48)
Fic-like (db=superfamily db_id=SSF140931 from=71 to=244 evalue=2.7e-45)
AMDSBA5_13_16
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(15136..16587)
DNA (1452bp) protein (484aa)
heteropolysaccharide repeat-containing protein
Predicted polysaccharide biosynthesis protein n=1 Tax=Methanothermobacter marburgensis str. Marburg RepID=D9PVW9_METTM (db=UNIREF evalue=3.0e-15 bit_score=89.0 identity=22.5 coverage=79.75206611570248)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=237)
transmembrane_regions (db=TMHMM db_id=tmhmm from=247 to=269)
AMDSBA5_13_17
unknown

Not on your lists

comp(17026..17385)
DNA (360bp) protein (120aa)
17026..17385 - ( gc_cont=0.481)
AMDSBA5_13_18
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

17804..18931
DNA (1128bp) protein (376aa)
putative signal transduction histidine kinase
Putative signal transduction histidine kinase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZE74_9PROT (db=UNIREF evalue=1.6e-11 bit_score=76.3 identity=28.2 coverage=62.23404255319149)
seg (db=Seg db_id=seg from=317 to=329)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=223 to=361 evalue=7.8e-16 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
AMDSBA5_13_19
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(18904..19587)
DNA (684bp) protein (228aa)
LuxR family transcriptional regulator
Two-component system response regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RI90_9ACTO (db=UNIREF evalue=1.3e-21 bit_score=109.0 identity=32.7 coverage=91.22807017543859)
seg (db=Seg db_id=seg from=93 to=104)
seg (db=Seg db_id=seg from=9 to=27)
AMDSBA5_13_20
unknown

Not on your lists

19803..19979
DNA (177bp) protein (59aa)
19803..19979 + ( gc_cont=0.446)
AMDSBA5_13_21
unknown

Not on your lists

19963..20142
DNA (180bp) protein (60aa)
seg (db=Seg db_id=seg from=25 to=34)
AMDSBA5_13_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20624..20905)
DNA (282bp) protein (94aa)
20624..20905 - ( gc_cont=0.482)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ40120.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain TPY) RepID=F8I8L8_SULAT
AMDSBA5_13_23
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

comp(20911..21378)
DNA (468bp) protein (156aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 278 RepID=A4Z033_BRASO (db=UNIREF evalue=3.1e-09 bit_score=67.4 identity=36.8 coverage=55.12820512820513)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=75 to=123 evalue=8.5e-14 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
excisionase family DNA binding domain-containing protein Tax=RIFOXYA1_FULL_Alicyclobacillus_53_8_curated
AMDSBA5_13_24
unknown

Not on your lists

21571..21831
DNA (261bp) protein (87aa)
21571..21831 + ( gc_cont=0.429)
AMDSBA5_13_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22163..22660)
DNA (498bp) protein (166aa)
thioesterase superfamily protein
Thioesterase superfamily protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DMV0_9BACL (db=UNIREF evalue=3.4e-51 bit_score=206.8 identity=60.3 coverage=90.36144578313254)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=18 to=165 evalue=5.0e-25)
(db=HMMPfam db_id=PF03061 from=61 to=145 evalue=2.5e-11 interpro_id=IPR006683 interpro_description=Thioesterase superfamily)
AMDSBA5_13_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22891..23469
DNA (579bp) protein (193aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=Q67PY6_SYMTH (db=UNIREF evalue=9.3e-16 bit_score=89.4 identity=32.4 coverage=87.04663212435233)
seg (db=Seg db_id=seg from=90 to=104)
seg (db=Seg db_id=seg from=142 to=155)
AMDSBA5_13_27
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

23637..23960
DNA (324bp) protein (108aa)
seg (db=Seg db_id=seg from=8 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:KJE75494.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium ac
AMDSBA5_13_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24066..25232
DNA (1167bp) protein (389aa)
Major facilitator superfamily MFS_1 n=2 Tax=Sulfobacillus acidophilus RepID=G8TT02_9FIRM (db=UNIREF evalue=1.4e-111 bit_score=408.7 identity=53.9 coverage=98.7146529562982)
major facilitator superfamily protein
major facilitator superfamily protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=355 to=374)
AMDSBA5_13_29
unknown

Not on your lists

25482..25715
DNA (234bp) protein (78aa)
(db=HMMPfam db_id=PF02604 from=11 to=64 evalue=2.5e-10 interpro_id=IPR006442 interpro_description=Bacteriophage P1, prevent-host-death protein)
YefM-like (db=superfamily db_id=SSF143120 from=4 to=69 evalue=8.8e-06)
phd_fam: prevent-host-death family protein (db=HMMTigr db_id=TIGR01552 from=6 to=57 evalue=0.02 interpro_id=IPR006442 interpro_description=Bacteriophage P1, prevent-host-death protein)
AMDSBA5_13_30

Not on your lists

comp(26011..26319)
DNA (309bp) protein (103aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
seg (db=Seg db_id=seg from=68 to=84)
Displaying items 1-30 of 50 in total

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