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AMDSBA5_13_4

Organism: S._thermosulfido._IM5

near complete RP 51 / 55 MC: 14 BSCG 51 / 51 MC: 1 ASCG 0 / 38
Location: comp(3000..3767)

Top 3 Functional Annotations

Value Algorithm Source
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34) iprscan interpro
DB: TMHMM
  • Identity: null
  • Coverage: null
  • Bit_score: null
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=179) iprscan interpro
DB: TMHMM
  • Identity: null
  • Coverage: null
  • Bit_score: null
(db=HMMPfam db_id=PF02706 from=3 to=124 evalue=5.1e-06 interpro_id=IPR003856 interpro_description=Lipopolysaccharide biosynthesis GO=Biological Process: lipopolysaccharide biosynthetic process (GO:0009103), Cellular Component: membrane (GO:0016020)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 5.10e-06

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Taxonomy

Clostridium pasteurianum → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 768
ATGAAGCTATCTCGGCGGATTAAACGTCATATGGGGATCAGTGTCAGTCTTGTCATCTTAACCAGTAGCATGGCCTTTGGTATCGCGCATTTTGTGCTACACAAGTCTTATACGAGTACCGCCACGTTATTAGTCATTCCCTCGCACAATGCTAATTCTTTAATATCAGCCTTACAGCTGACCCAAACCTACGCGGACTTAGCGACGTCTAATCGGGTGTGGAATACGGCCGCTGAGGCCTTAGCGGACCATATATCCGCCGCCTCGCTGGAGTCTCACACCAAAGTCAGCGCGATTACCAATACCGATCTTATCACCATCACAGCGACCGCTCCCAGTGCCGTGCTGGCTTCAGAAGAAGCCACTCAGGTGGCTTTGGCGACAATGAACGCCGCCACTGAGCTGACCGGTTCGTCCGAATTGCAACTTTCCTCACCAGCGGCAATCGCTATGCGACCAACATTTCCCAATATGAAAAAAATTGAACTACTCGCTTTTCTCTTGTCTGCCATGGGGGCGATTTTACTCGCCCTGCTCAGGGAGCACTTTGATACCAGTTTGCAAACCGACGAGGATATTCAACAGTGGCTTCACCTACCGGTTTGGGCGATGATTCCTCGGCTTAAACCGAAGTGGGTCAAAAATCATCCGATTCTCTTACCGCAGGATATGGTATCTCACCAATCCCCCTCAATTTCTTTGAAGGAGGCCCGCACCGATGCCCAAAATTCTCTCTCATCCGCACCCGAACGTCGCCAAAGCCCTTGA
PROTEIN sequence
Length: 256
MKLSRRIKRHMGISVSLVILTSSMAFGIAHFVLHKSYTSTATLLVIPSHNANSLISALQLTQTYADLATSNRVWNTAAEALADHISAASLESHTKVSAITNTDLITITATAPSAVLASEEATQVALATMNAATELTGSSELQLSSPAAIAMRPTFPNMKKIELLAFLLSAMGAILLALLREHFDTSLQTDEDIQQWLHLPVWAMIPRLKPKWVKNHPILLPQDMVSHQSPSISLKEARTDAQNSLSSAPERRQSP*