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AMDSBA5_30

Alias: AMDSBA5_C29

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_30_1
Proteus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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479..787
-----------------
DNA (309bp)
protein (103aa)
479..787 + ( gc_cont=0.440)
AMDSBA5_30_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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874..2253
-----------------
DNA (1380bp)
protein (460aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.-)
Benzamide amidohydrolase n=1 Tax=uncultured bacterium RepID=E2RWF5_9BACT (db=UNIREF evalue=5.6e-43 bit_score=181.0 identity=29.7 coverage=92.3913043478261)
Amidase signature (AS) enzymes (db=superfamily db_id=SSF75304 from=1 to=458 evalue=1.3e-124 interpro_id=IPR023631 interpro_description=Amidase signature domain)
seg (db=Seg db_id=seg from=146 to=167)
AMDSBA5_30_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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2295..3218
-----------------
DNA (924bp)
protein (308aa)
chitin deacetylase (EC:3.5.1.41)
Polysaccharide deacetylase n=2 Tax=Legionella longbeachae RepID=D1RFI7_LEGLO (db=UNIREF evalue=1.9e-55 bit_score=221.9 identity=40.5 coverage=92.85714285714286)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=6 to=305 evalue=5.6e-70 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
(db=HMMPfam db_id=PF01522 from=76 to=171 evalue=1.9e-12 interpro_id=IPR002509 interpro_description=Polysaccharide deacetylase GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
AMDSBA5_30_4
unknown

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comp(3793..4425)
-----------------
DNA (633bp)
protein (211aa)
3793..4425 - ( gc_cont=0.513)
AMDSBA5_30_5
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4365..4799)
-----------------
DNA (435bp)
protein (145aa)
4365..4799 - ( gc_cont=0.552)
AMDSBA5_30_6
unknown

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comp(4799..5257)
-----------------
DNA (459bp)
protein (153aa)
4799..5257 - ( gc_cont=0.519)
AMDSBA5_30_7
unknown

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comp(5440..5748)
-----------------
DNA (309bp)
protein (103aa)
5440..5748 - ( gc_cont=0.508)
AMDSBA5_30_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6438..6776
-----------------
DNA (339bp)
protein (113aa)
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TYP7_9FIRM (db=UNIREF evalue=5.4e-56 bit_score=222.2 identity=94.6 coverage=97.34513274336283)
Dimeric alpha+beta barrel (db=superfamily db_id=SSF54909 from=11 to=112 evalue=3.5e-17 interpro_id=IPR011008 interpro_description=Dimeric alpha-beta barrel)
(db=HMMPfam db_id=PF03992 from=32 to=82 evalue=4.7e-06 interpro_id=IPR007138 interpro_description=Antibiotic biosynthesis monooxygenase)
AMDSBA5_30_9
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6930..8447
-----------------
DNA (1518bp)
protein (506aa)
SMC domain protein
seg (db=Seg db_id=seg from=405 to=419)
seg (db=Seg db_id=seg from=3 to=14)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=280 evalue=3.7e-11)
AMDSBA5_30_10
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8676..10691
-----------------
DNA (2016bp)
protein (672aa)
N-6 DNA methylase rbh
N-6 DNA methylase rbh
N-6 DNA methylase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRQ6_METLZ (db=UNIREF evalue=2.9e-109 bit_score=401.7 identity=41.5 coverage=82.73809523809523)
AMDSBA5_30_11
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10695..12047
-----------------
DNA (1353bp)
protein (451aa)
restriction endonuclease S subunit
Restriction modification system DNA specificity domain n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G8R8_GEOUR (db=UNIREF evalue=1.0e-33 bit_score=150.2 identity=30.5 coverage=65.85365853658537)
coiled-coil (db=Coil db_id=coil from=178 to=206 evalue=NA)
DNA methylase specificity domain (db=superfamily db_id=SSF116734 from=217 to=442 evalue=5.0e-49)
AMDSBA5_30_12
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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12044..12769
-----------------
DNA (726bp)
protein (242aa)
hypothetical protein
Transporter n=2 Tax=Corynebacterium jeikeium RepID=C8RU03_CORJE (db=UNIREF evalue=1.4e-29 bit_score=135.6 identity=37.7 coverage=78.51239669421489)
seg (db=Seg db_id=seg from=156 to=163)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLU4_THISH
AMDSBA5_30_13
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13001..15970
-----------------
DNA (2970bp)
protein (990aa)
hypothetical protein
hypothetical protein
Type I site-specific restriction-modification system, R subunit (Helicase) n=1 Tax=Nitrosococcus watsonii C-113 RepID=D8K8R7_NITWC (db=UNIREF evalue=1.2e-103 bit_score=383.6 identity=28.4 coverage=97.97979797979798)
AMDSBA5_30_14
Caldatribacterium californiense, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

16978..17697
-----------------
DNA (720bp)
protein (240aa)
CRISPR-associated protein, Cas6 family
CRISPR-associated protein, Cas6 family n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YTK7_9THEM (db=UNIREF evalue=1.0e-08 bit_score=66.2 identity=24.2 coverage=93.75)
seg (db=Seg db_id=seg from=197 to=208)
cas_cas6: CRISPR-associated endoribonuclease (db=HMMTigr db_id=TIGR01877 from=36 to=225 evalue=2.9e-19 interpro_id=IPR010156 interpro_description=CRISPR-associated protein, Cas6)
AMDSBA5_30_15
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17690..19816
-----------------
DNA (2127bp)
protein (709aa)
Csm1 family CRISPR-associated protein
CRISPR-associated protein, Csm1 family n=3 Tax=Arthrospira RepID=B5W7F8_SPIMA (db=UNIREF evalue=4.3e-10 bit_score=72.4 identity=28.4 coverage=22.425952045133993)
seg (db=Seg db_id=seg from=678 to=692)
seg (db=Seg db_id=seg from=429 to=438)
AMDSBA5_30_16
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19816..20253
-----------------
DNA (438bp)
protein (146aa)
CRISPR-associated protein
CRISPR-associated protein TM1810 domain protein n=1 Tax=Desulfotomaculum carboxydivorans CO-1-SRB RepID=F6B7U1_DESCC (db=UNIREF evalue=3.2e-16 bit_score=90.5 identity=40.7 coverage=82.87671232876713)
(db=HMMPfam db_id=PF03750 from=31 to=127 evalue=1.0e-06 interpro_id=IPR010149 interpro_description=CRISPR-associated protein, TM1810 C-terminal)
AMDSBA5_30_17
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20237..20938
-----------------
DNA (702bp)
protein (234aa)
CRISPR-associated RAMP Csm3 family protein
CRISPR-associated protein, Csm3 family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J504_DESRM (db=UNIREF evalue=4.5e-49 bit_score=200.3 identity=49.3 coverage=85.04273504273505)
seg (db=Seg db_id=seg from=207 to=215)
cas_TM1809: CRISPR-associated RAMP protein (db=HMMTigr db_id=TIGR02582 from=18 to=219 evalue=1.0e-62 interpro_id=IPR013412 interpro_description=CRISPR-associated RAMP Csm3)
AMDSBA5_30_18
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20935..21861
-----------------
DNA (927bp)
protein (309aa)
hypothetical protein (db=KEGG evalue=3.4e-12 bit_score=77.8 identity=24.0 coverage=87.05501618122977)
Putative uncharacterized protein n=1 Tax=Treponema succinifaciens DSM 2489 RepID=F2NWD6_TRES6 (db=UNIREF evalue=4.5e-12 bit_score=77.8 identity=24.0 coverage=87.05501618122977)
CRISPR-associated RAMP protein, Csm4 family n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NNA0_MARHT
AMDSBA5_30_19
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21858..23171
-----------------
DNA (1314bp)
protein (438aa)
hypothetical protein (db=KEGG evalue=3.9e-38 bit_score=164.5 identity=29.5 coverage=97.94520547945206)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum carboxydivorans CO-1-SRB RepID=F6B7U4_DESCC (db=UNIREF evalue=5.2e-38 bit_score=164.5 identity=29.5 coverage=97.94520547945206)
(db=HMMPfam db_id=PF09670 from=89 to=400 evalue=2.1e-18)
AMDSBA5_30_20
unknown

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comp(24801..24989)
-----------------
DNA (189bp)
protein (63aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=17 evalue=5.0)
AMDSBA5_30_21
unknown

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comp(24943..25266)
-----------------
DNA (324bp)
protein (108aa)
24943..25266 - ( gc_cont=0.432)
AMDSBA5_30_22
unknown

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25982..26191
-----------------
DNA (210bp)
protein (70aa)
25982..26191 + ( gc_cont=0.600)
AMDSBA5_30_23
unknown

Not on your lists

comp(26283..26474)
-----------------
DNA (192bp)
protein (64aa)
26283..26474 - ( gc_cont=0.490)
Displaying 23 items

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